Wall clock time and date at job start Tue Mar 31 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38755 * 120.05875 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94331 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05339 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11660 * 359.95606 * 6 5 4 8 8 C 1.38166 * 120.05257 * 0.04139 * 7 6 5 9 9 C 1.50705 * 120.02903 * 180.25141 * 8 7 6 10 10 H 1.08998 * 110.88871 * 177.29740 * 9 8 7 11 11 C 1.55157 * 111.00422 * 301.18507 * 9 8 7 12 12 C 1.54325 * 102.94062 * 153.57245 * 11 9 8 13 13 N 1.47024 * 107.27390 * 337.80415 * 12 11 9 14 14 C 1.34773 * 125.65250 * 178.92263 * 13 12 11 15 15 O 1.21274 * 120.00388 * 180.02562 * 14 13 12 16 16 C 1.50707 * 119.99870 * 0.02562 * 14 13 12 17 17 C 1.50689 * 109.47210 * 180.02562 * 16 14 13 18 18 H 1.08007 * 120.00067 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99924 * 180.02562 * 17 16 14 20 20 N 1.31512 * 120.00335 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47245 * 89.99601 * 21 19 17 23 23 H 1.48498 * 109.47040 * 210.00247 * 21 19 17 24 24 H 1.48504 * 109.46968 * 329.99832 * 21 19 17 25 25 C 1.47427 * 108.69971 * 358.94294 * 13 12 11 26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 28 28 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 29 29 H 1.07995 * 120.02466 * 0.02562 * 4 3 2 30 30 H 1.07992 * 119.97061 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.94328 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.97363 * 180.02562 * 7 6 5 33 33 H 1.09004 * 110.71519 * 271.93250 * 11 9 8 34 34 H 1.09000 * 110.71918 * 35.03142 * 11 9 8 35 35 H 1.09004 * 109.88496 * 97.21968 * 12 11 9 36 36 H 1.09001 * 109.88278 * 218.23142 * 12 11 9 37 37 H 1.09004 * 109.47091 * 300.00936 * 16 14 13 38 38 H 1.09001 * 109.46830 * 59.99804 * 16 14 13 39 39 H 0.96998 * 120.00579 * 179.97438 * 20 19 17 40 40 H 1.08998 * 110.36356 * 265.28923 * 25 13 12 41 41 H 1.09000 * 110.36589 * 142.96615 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0007 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0221 0.0066 10 1 3.6133 -0.8586 0.0542 11 6 5.1909 -0.0377 -1.2285 12 6 6.3531 -0.9265 -0.7377 13 7 6.3574 -0.8677 0.7314 14 6 7.2096 -1.5265 1.5414 15 8 7.1201 -1.4034 2.7446 16 6 8.2737 -2.4162 0.9521 17 6 9.0861 -3.0309 2.0624 18 1 8.8548 -2.8008 3.0920 19 6 10.1247 -3.8872 1.7640 20 7 10.4068 -4.1671 0.5103 21 14 11.1314 -4.6498 3.1404 22 1 10.5155 -5.9377 3.5491 23 1 12.5169 -4.8925 2.6644 24 1 11.1621 -3.7251 4.3021 25 6 5.2747 0.0309 1.1716 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2128 2.3203 -0.0005 30 1 1.3340 4.5113 -0.0019 31 1 3.7922 4.6380 -0.0016 32 1 5.1344 2.5752 -0.0007 33 1 4.6834 -0.4994 -2.0755 34 1 5.5475 0.9584 -1.4905 35 1 6.1987 -1.9540 -1.0671 36 1 7.2983 -0.5501 -1.1288 37 1 7.8034 -3.2060 0.3661 38 1 8.9256 -1.8255 0.3084 39 1 11.1377 -4.7691 0.3003 40 1 5.6592 1.0381 1.3315 41 1 4.8134 -0.3492 2.0832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:45 Heat of formation + Delta-G solvation = -51.924007 kcal Electronic energy + Delta-G solvation = -22500.497089 eV Core-core repulsion = 19152.401013 eV Total energy + Delta-G solvation = -3348.096076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62534 -39.15691 -37.68141 -36.59925 -32.93663 -32.73872 -30.32883 -29.95726 -29.17233 -27.97094 -27.26907 -24.33994 -22.89266 -22.28799 -22.10765 -20.11658 -18.60674 -18.23981 -16.76040 -16.41369 -15.96997 -15.94525 -15.72673 -15.15193 -14.71401 -14.58518 -14.17986 -13.78478 -13.59720 -13.35341 -13.03647 -12.97930 -12.37443 -12.30322 -12.21017 -11.90462 -11.68130 -11.55274 -11.36653 -11.22175 -11.09525 -10.81651 -10.70108 -10.60848 -10.47216 -9.91072 -9.20812 -9.01028 -8.60296 -8.39382 -8.31330 -7.97940 -6.01651 -4.00912 1.11206 1.25533 3.06342 3.37975 3.42786 3.49816 3.53634 3.71421 3.75577 4.49028 4.52589 4.58154 4.72406 4.83585 4.84670 4.89175 4.97011 5.03765 5.20391 5.22053 5.28995 5.36470 5.44921 5.52263 5.56094 5.84046 5.86109 5.93497 6.07911 6.10851 6.14499 6.21114 6.29697 6.32986 6.48531 6.59180 6.95226 7.18521 7.26555 7.39087 8.00704 8.10979 8.46405 9.09855 9.27242 9.63869 11.10793 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030654 B = 0.003129 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.197038 B = 8945.983065 C = 9122.764307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.131 3.869 4 C -0.209 4.209 5 C -0.087 4.087 6 C -0.155 4.155 7 C -0.076 4.076 8 C -0.096 4.096 9 C -0.058 4.058 10 H 0.098 0.902 11 C -0.121 4.121 12 C 0.106 3.894 13 N -0.634 5.634 14 C 0.530 3.470 15 O -0.545 6.545 16 C 0.012 3.988 17 C -0.508 4.508 18 H 0.075 0.925 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.115 3.885 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 14.167 -7.189 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.086 3.914 4 C -0.227 4.227 5 C -0.105 4.105 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.097 4.097 9 C -0.077 4.077 10 H 0.116 0.884 11 C -0.159 4.159 12 C -0.017 4.017 13 N -0.372 5.372 14 C 0.323 3.677 15 O -0.421 6.421 16 C -0.027 4.027 17 C -0.547 4.547 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.008 4.008 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.941 13.863 -6.567 25.159 hybrid contribution 0.200 -0.224 0.498 0.581 sum -19.741 13.639 -6.070 24.750 Atomic orbital electron populations 1.23052 0.78540 1.04005 1.01140 1.86104 1.21159 1.26721 1.88557 1.18838 0.91739 0.84272 0.96585 1.21190 0.99864 0.92374 1.09302 1.20908 0.94718 0.96844 0.97997 1.21047 0.93866 0.98402 1.03969 1.20942 1.00294 0.90980 0.97207 1.19031 0.90109 0.95280 1.05269 1.21177 0.95202 0.95637 0.95695 0.88382 1.22754 0.95368 1.00524 0.97257 1.21905 0.98466 1.00183 0.81167 1.48836 1.33593 1.48114 1.06627 1.21817 0.80997 0.78621 0.86295 1.90538 1.71986 1.64190 1.15359 1.19211 0.91500 0.93886 0.98134 1.21198 1.13724 1.26106 0.93622 0.90715 1.25001 0.97306 0.96515 0.95765 1.69959 1.30474 1.36485 1.17191 0.86433 0.78977 0.79547 0.82162 1.20619 1.21278 1.19660 1.22132 0.87391 0.94334 0.96923 0.88199 0.92737 0.92772 0.85617 0.85999 0.85880 0.85077 0.90161 0.90627 0.91322 0.91308 0.93517 0.93518 0.92942 0.92164 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.47 9.32 -19.42 -0.18 -3.65 16 3 C 0.13 1.48 6.66 -39.21 -0.26 1.22 16 4 C -0.21 -1.95 9.04 -39.43 -0.36 -2.31 16 5 C -0.09 -0.75 10.04 -39.60 -0.40 -1.15 16 6 C -0.15 -1.43 10.04 -39.56 -0.40 -1.83 16 7 C -0.08 -0.81 8.29 -39.61 -0.33 -1.14 16 8 C -0.10 -1.14 5.01 -104.47 -0.52 -1.66 16 9 C -0.06 -0.76 3.21 -89.62 -0.29 -1.05 16 10 H 0.10 1.37 7.11 -51.93 -0.37 1.00 16 11 C -0.12 -1.43 6.37 -24.90 -0.16 -1.59 16 12 C 0.11 1.61 6.49 -3.06 -0.02 1.59 16 13 N -0.63 -12.10 3.33 -170.51 -0.57 -12.67 16 14 C 0.53 12.94 7.84 -10.98 -0.09 12.85 16 15 O -0.54 -15.08 15.71 5.56 0.09 -14.99 16 16 C 0.01 0.31 4.65 -29.04 -0.14 0.18 16 17 C -0.51 -15.19 8.92 -34.45 -0.31 -15.50 16 18 H 0.07 2.33 6.75 -52.48 -0.35 1.98 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 21 Si 0.90 22.55 29.54 -169.99 -5.02 17.52 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.12 1.87 6.31 -2.53 -0.02 1.85 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.31 7.01 -52.49 -0.37 0.94 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.80 7.11 -51.93 -0.37 0.43 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.06 0.92 6.72 -51.93 -0.35 0.58 16 41 H 0.07 1.29 8.04 -51.93 -0.42 0.88 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -34.61 338.29 -8.10 -42.71 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.87 Total: -2.07 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.38 Total: -5.85 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.17 Total: -38.78 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.09 Total: -18.64 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.61 -8.10 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.212 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds