Wall clock time and date at job start Tue Mar 31 2020 06:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38755 * 120.05875 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94331 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05339 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11660 * 359.95606 * 6 5 4 8 8 C 1.38166 * 120.05257 * 0.04139 * 7 6 5 9 9 C 1.50705 * 120.02903 * 180.25141 * 8 7 6 10 10 H 1.08998 * 110.88871 * 177.29740 * 9 8 7 11 11 C 1.55157 * 111.00422 * 301.18507 * 9 8 7 12 12 C 1.54325 * 102.94062 * 153.57245 * 11 9 8 13 13 N 1.47024 * 107.27390 * 337.80415 * 12 11 9 14 14 C 1.34773 * 125.65250 * 178.92263 * 13 12 11 15 15 O 1.21274 * 120.00388 * 180.02562 * 14 13 12 16 16 C 1.50707 * 119.99870 * 0.02562 * 14 13 12 17 17 C 1.50689 * 109.47210 * 180.02562 * 16 14 13 18 18 H 1.08007 * 120.00067 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99924 * 180.02562 * 17 16 14 20 20 N 1.31512 * 120.00335 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47245 * 89.99601 * 21 19 17 23 23 H 1.48498 * 109.47040 * 210.00247 * 21 19 17 24 24 H 1.48504 * 109.46968 * 329.99832 * 21 19 17 25 25 C 1.47427 * 108.69971 * 358.94294 * 13 12 11 26 26 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 28 28 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 29 29 H 1.07995 * 120.02466 * 0.02562 * 4 3 2 30 30 H 1.07992 * 119.97061 * 179.97438 * 5 4 3 31 31 H 1.08000 * 119.94328 * 180.02562 * 6 5 4 32 32 H 1.08001 * 119.97363 * 180.02562 * 7 6 5 33 33 H 1.09004 * 110.71519 * 271.93250 * 11 9 8 34 34 H 1.09000 * 110.71918 * 35.03142 * 11 9 8 35 35 H 1.09004 * 109.88496 * 97.21968 * 12 11 9 36 36 H 1.09001 * 109.88278 * 218.23142 * 12 11 9 37 37 H 1.09004 * 109.47091 * 300.00936 * 16 14 13 38 38 H 1.09001 * 109.46830 * 59.99804 * 16 14 13 39 39 H 0.96998 * 120.00579 * 179.97438 * 20 19 17 40 40 H 1.08998 * 110.36356 * 265.28923 * 25 13 12 41 41 H 1.09000 * 110.36589 * 142.96615 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 4.0560 2.5171 -0.0007 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0221 0.0066 10 1 3.6133 -0.8586 0.0542 11 6 5.1909 -0.0377 -1.2285 12 6 6.3531 -0.9265 -0.7377 13 7 6.3574 -0.8677 0.7314 14 6 7.2096 -1.5265 1.5414 15 8 7.1201 -1.4034 2.7446 16 6 8.2737 -2.4162 0.9521 17 6 9.0861 -3.0309 2.0624 18 1 8.8548 -2.8008 3.0920 19 6 10.1247 -3.8872 1.7640 20 7 10.4068 -4.1671 0.5103 21 14 11.1314 -4.6498 3.1404 22 1 10.5155 -5.9377 3.5491 23 1 12.5169 -4.8925 2.6644 24 1 11.1621 -3.7251 4.3021 25 6 5.2747 0.0309 1.1716 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2128 2.3203 -0.0005 30 1 1.3340 4.5113 -0.0019 31 1 3.7922 4.6380 -0.0016 32 1 5.1344 2.5752 -0.0007 33 1 4.6834 -0.4994 -2.0755 34 1 5.5475 0.9584 -1.4905 35 1 6.1987 -1.9540 -1.0671 36 1 7.2983 -0.5501 -1.1288 37 1 7.8034 -3.2060 0.3661 38 1 8.9256 -1.8255 0.3084 39 1 11.1377 -4.7691 0.3003 40 1 5.6592 1.0381 1.3315 41 1 4.8134 -0.3492 2.0832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189610.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:44 Heat of formation + Delta-G solvation = -73.240237 kcal Electronic energy + Delta-G solvation = -22501.421430 eV Core-core repulsion = 19152.401013 eV Total energy + Delta-G solvation = -3349.020417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51858 -40.61125 -38.76065 -37.86450 -35.13775 -33.98341 -31.36626 -31.02912 -30.84543 -29.23115 -27.99602 -26.09912 -24.30281 -23.50922 -22.90344 -21.12371 -20.22120 -19.03053 -18.57405 -17.78811 -17.53152 -16.83816 -16.72634 -16.60833 -16.20441 -15.84010 -15.33501 -15.22073 -14.63005 -14.43448 -14.29840 -14.15245 -13.79492 -13.71573 -13.56332 -13.14935 -12.90918 -12.80402 -12.59802 -12.54364 -12.47270 -12.31946 -12.03843 -11.95577 -11.60964 -11.54946 -11.43864 -10.63971 -10.59428 -9.75656 -9.60569 -9.05603 -8.26636 -6.34702 0.36348 0.52014 1.38982 1.40443 1.53136 1.80955 2.11985 2.42040 2.43795 2.78731 3.07952 3.56381 3.66395 3.69254 3.97414 4.13407 4.20244 4.27484 4.30561 4.35660 4.37540 4.41561 4.50522 4.59113 4.68317 4.72282 4.75857 4.85059 4.90190 5.01125 5.05775 5.10536 5.20394 5.25409 5.41291 5.46869 5.56918 5.64641 5.72409 5.89693 6.03502 6.49077 6.58401 6.79062 7.30606 7.41069 8.85664 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030654 B = 0.003129 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.197038 B = 8945.983065 C = 9122.764307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.085 4.085 8 C -0.118 4.118 9 C -0.043 4.043 10 H 0.086 0.914 11 C -0.106 4.106 12 C 0.097 3.903 13 N -0.628 5.628 14 C 0.528 3.472 15 O -0.588 6.588 16 C 0.020 3.980 17 C -0.541 4.541 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.923 5.923 21 Si 0.966 3.034 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.275 1.275 25 C 0.113 3.887 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.348 15.505 -8.137 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.071 3.929 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.062 4.062 10 H 0.104 0.896 11 C -0.143 4.143 12 C -0.026 4.026 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.469 6.469 16 C -0.019 4.019 17 C -0.580 4.580 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.010 4.010 26 H 0.129 0.871 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.140 15.220 -7.576 27.128 hybrid contribution 0.459 -0.583 0.734 1.044 sum -20.681 14.636 -6.842 26.244 Atomic orbital electron populations 1.23305 0.76647 1.05246 1.02274 1.86067 1.23269 1.27103 1.88660 1.19037 0.91792 0.85055 0.96984 1.21488 1.01020 0.91924 1.08483 1.21305 0.94812 0.97708 0.96335 1.21345 0.94337 0.98765 1.03224 1.21057 1.00637 0.91130 0.97459 1.18964 0.90517 0.94815 1.07569 1.20960 0.94395 0.96387 0.94443 0.89561 1.22737 0.93539 1.00877 0.97181 1.22217 1.00498 1.01252 0.78595 1.48701 1.32633 1.46743 1.08196 1.21331 0.81615 0.79087 0.85977 1.90500 1.73410 1.65932 1.17010 1.18990 0.91889 0.93921 0.97103 1.21377 1.15380 1.27709 0.93498 0.92857 1.25803 0.98009 0.96507 0.98407 1.70027 1.30899 1.36601 1.18723 0.85432 0.77958 0.78654 0.78903 1.19583 1.19526 1.19958 1.22317 0.87245 0.93777 0.97613 0.87080 0.91860 0.91263 0.83439 0.83178 0.83831 0.84870 0.87938 0.88759 0.91413 0.90728 0.94326 0.94112 0.92259 0.91019 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.19 9.32 -92.40 -0.86 -8.05 16 3 C 0.12 2.48 6.66 22.51 0.15 2.63 16 4 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 5 C -0.08 -1.19 10.04 22.26 0.22 -0.97 16 6 C -0.16 -2.51 10.04 22.28 0.22 -2.29 16 7 C -0.08 -1.66 8.29 22.25 0.18 -1.48 16 8 C -0.12 -2.66 5.01 -19.77 -0.10 -2.76 16 9 C -0.04 -1.10 3.21 -10.15 -0.03 -1.13 16 10 H 0.09 2.42 7.11 -2.39 -0.02 2.41 16 11 C -0.11 -2.34 6.37 31.78 0.20 -2.13 16 12 C 0.10 2.90 6.49 86.73 0.56 3.47 16 13 N -0.63 -24.56 3.33 -811.77 -2.70 -27.26 16 14 C 0.53 26.85 7.84 87.66 0.69 27.54 16 15 O -0.59 -34.13 15.71 -3.01 -0.05 -34.18 16 16 C 0.02 1.11 4.65 29.10 0.14 1.25 16 17 C -0.54 -33.43 8.92 25.60 0.23 -33.20 16 18 H 0.05 3.47 6.75 -2.91 -0.02 3.45 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.92 -55.17 13.29 21.45 0.28 -54.88 16 21 Si 0.97 46.48 29.54 68.60 2.03 48.51 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 25 C 0.11 3.73 6.31 86.86 0.55 4.28 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 28 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 29 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 30 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.13 2.45 7.01 -2.91 -0.02 2.43 16 33 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.09 1.77 7.11 -2.39 -0.02 1.76 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.04 2.25 8.14 -2.39 -0.02 2.24 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.07 2.21 6.72 -2.39 -0.02 2.20 16 41 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 Total: -1.00 -76.41 338.29 4.52 -71.89 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.02 Total: 9.47 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 4.79 Total: -5.51 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.42 Total: -82.14 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.91 Total: -42.23 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -76.41 4.52 -71.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189610.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.346 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds