Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 117.00275 * 2 1 4 4 C 1.38728 * 120.05663 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94551 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05415 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94317 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47022 * 339.99832 * 7 6 5 9 9 N 1.46505 * 109.46976 * 219.99975 * 7 6 5 10 10 C 1.34771 * 119.99973 * 155.00146 * 9 7 6 11 11 O 1.21281 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00042 * 180.02562 * 10 9 7 13 13 C 1.50695 * 109.47342 * 179.97438 * 12 10 9 14 14 H 1.08006 * 120.00171 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00208 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00229 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47340 * 89.99591 * 17 15 13 19 19 H 1.48495 * 109.47222 * 210.00106 * 17 15 13 20 20 H 1.48504 * 109.46948 * 329.99903 * 17 15 13 21 21 C 1.52996 * 109.47193 * 100.00315 * 7 6 5 22 22 C 1.53000 * 117.49997 * 185.00008 * 21 7 6 23 23 C 1.53002 * 60.02940 * 252.49592 * 22 21 7 24 24 C 1.38262 * 120.10981 * 0.27067 * 6 5 4 25 25 C 1.38148 * 120.05643 * 359.45706 * 24 6 5 26 26 H 1.08995 * 109.47286 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47230 * 300.00476 * 1 2 3 28 28 H 1.09004 * 109.46930 * 60.00003 * 1 2 3 29 29 H 1.08004 * 120.03025 * 359.95810 * 4 3 2 30 30 H 1.07996 * 119.97718 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99871 * 334.99945 * 9 7 6 32 32 H 1.08999 * 109.46747 * 299.99734 * 12 10 9 33 33 H 1.09001 * 109.47279 * 59.99612 * 12 10 9 34 34 H 0.96996 * 120.00382 * 180.02562 * 16 15 13 35 35 H 1.09008 * 115.56055 * 330.68521 * 21 7 6 36 36 H 1.09002 * 117.49833 * 359.97438 * 22 21 7 37 37 H 1.09002 * 117.49953 * 144.99738 * 22 21 7 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 40 40 H 1.08000 * 119.97341 * 179.70041 * 24 6 5 41 41 H 1.08006 * 120.02769 * 180.27231 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 -0.0017 8 1 5.0116 4.9040 0.3495 9 7 3.2654 5.9346 0.8858 10 6 3.9099 6.9781 1.4444 11 8 5.0867 7.1585 1.2128 12 6 3.1687 7.9201 2.3578 13 6 4.1097 8.9912 2.8456 14 1 5.1416 8.9898 2.5265 15 6 3.6536 9.9732 3.6993 16 7 2.3970 9.9753 4.0874 17 14 4.8199 11.3014 4.3034 18 1 4.7897 12.4513 3.3643 19 1 4.3983 11.7536 5.6535 20 1 6.1990 10.7549 4.3727 21 6 3.9940 5.5857 -1.4226 22 6 4.7500 6.8951 -1.6565 23 6 3.2201 6.8828 -1.6705 24 6 1.9212 3.6048 0.0051 25 6 1.2915 2.3751 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 4.0209 0.3799 0.0016 30 1 5.1345 2.5750 0.0008 31 1 2.3243 5.7901 1.0713 32 1 2.3444 8.3806 1.8132 33 1 2.7762 7.3659 3.2104 34 1 2.0760 10.6663 4.6877 35 1 4.0075 4.8467 -2.2239 36 1 5.2415 7.3527 -0.7979 37 1 5.2611 7.0176 -2.6114 38 1 2.7054 7.3323 -0.8213 39 1 2.7248 6.9969 -2.6347 40 1 1.3343 4.5114 0.0096 41 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -25.383947 kcal Electronic energy + Delta-G solvation = -22580.807568 eV Core-core repulsion = 19233.862355 eV Total energy + Delta-G solvation = -3346.945213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47048 -39.42967 -37.63952 -36.36775 -33.47854 -32.91424 -31.18858 -30.83457 -28.87827 -27.70088 -25.89238 -23.53777 -22.75020 -21.99851 -21.66613 -20.12442 -19.34081 -18.34352 -16.59636 -16.49810 -16.24315 -15.94692 -15.73887 -15.23500 -14.90892 -14.47220 -14.20187 -13.90199 -13.68838 -13.47834 -13.08073 -12.77539 -12.54134 -12.21395 -12.06924 -11.78639 -11.63132 -11.29024 -11.18762 -11.02677 -10.91606 -10.75439 -10.57571 -10.03921 -9.94300 -9.70591 -9.26708 -9.11165 -8.68642 -8.44511 -8.38198 -8.18463 -6.05272 -4.04577 1.23195 1.28764 3.06986 3.35328 3.40671 3.47379 3.58247 3.70306 3.85077 4.25007 4.50262 4.62752 4.67767 4.74656 4.87201 4.88989 5.14991 5.19720 5.26828 5.31374 5.33372 5.35725 5.41828 5.52684 5.68952 5.76896 5.96683 6.01688 6.12580 6.18182 6.25598 6.31801 6.47874 6.57160 6.62825 6.77466 7.08410 7.19763 7.21444 7.32732 7.96553 8.05901 8.43809 9.06280 9.23734 9.60587 11.07149 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.003574 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.131570 B = 7832.576804 C = 8475.871813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.150 4.150 5 C -0.070 4.070 6 C -0.114 4.114 7 C 0.218 3.782 8 H 0.094 0.906 9 N -0.741 5.741 10 C 0.517 3.483 11 O -0.539 6.539 12 C 0.005 3.995 13 C -0.506 4.506 14 H 0.075 0.925 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.167 4.167 22 C -0.181 4.181 23 C -0.174 4.174 24 C -0.068 4.068 25 C -0.204 4.204 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.394 0.606 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.261 0.739 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -17.840 -10.789 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.169 4.169 5 C -0.088 4.088 6 C -0.115 4.115 7 C 0.113 3.887 8 H 0.112 0.888 9 N -0.396 5.396 10 C 0.308 3.692 11 O -0.416 6.416 12 C -0.034 4.034 13 C -0.544 4.544 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.186 4.186 22 C -0.218 4.218 23 C -0.211 4.211 24 C -0.086 4.086 25 C -0.223 4.223 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.229 0.771 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.102 0.898 40 H 0.144 0.856 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.901 -17.780 -10.820 21.176 hybrid contribution -0.390 0.732 0.359 0.904 sum -4.291 -17.048 -10.461 20.457 Atomic orbital electron populations 1.23041 0.78467 1.03792 1.01469 1.86051 1.21341 1.27116 1.88885 1.19038 0.92391 0.84068 0.96951 1.20378 0.91315 0.98515 1.06643 1.20850 1.00045 0.90727 0.97176 1.19880 0.93734 0.94749 1.03128 1.19099 0.96518 0.84834 0.88287 0.88794 1.46501 1.13884 1.29356 1.49810 1.21978 0.87953 0.80043 0.79259 1.90466 1.16909 1.72905 1.61277 1.19238 0.96867 0.93457 0.93874 1.21153 0.97211 1.08846 1.27228 0.90643 1.25004 0.95287 0.98104 0.96226 1.69956 1.14519 1.34687 1.34942 0.86444 0.81260 0.81660 0.77817 1.20639 1.21320 1.19664 1.22701 1.07400 0.91273 0.97229 1.23347 0.94536 0.99969 1.03948 1.22935 0.95230 1.00486 1.02490 1.20766 0.94015 0.97117 0.96749 1.21201 0.99984 0.92231 1.08902 0.88381 0.92545 0.92676 0.85227 0.85054 0.77090 0.93590 0.93571 0.92942 0.88033 0.85835 0.89892 0.88191 0.89770 0.85556 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.39 10.50 -19.44 -0.20 -3.59 16 3 C 0.12 1.37 6.69 -39.22 -0.26 1.11 16 4 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 5 C -0.07 -0.80 9.66 -39.60 -0.38 -1.19 16 6 C -0.11 -1.44 4.91 -104.60 -0.51 -1.96 16 7 C 0.22 3.23 2.61 -69.08 -0.18 3.05 16 8 H 0.09 1.56 7.43 -51.93 -0.39 1.17 16 9 N -0.74 -12.38 3.69 -54.93 -0.20 -12.58 16 10 C 0.52 11.26 6.50 -10.99 -0.07 11.19 16 11 O -0.54 -13.20 12.44 5.56 0.07 -13.13 16 12 C 0.00 0.12 5.46 -29.04 -0.16 -0.04 16 13 C -0.51 -14.49 8.92 -34.44 -0.31 -14.80 16 14 H 0.08 2.25 6.75 -52.48 -0.35 1.89 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 17 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.17 -2.36 5.72 -90.59 -0.52 -2.87 16 22 C -0.18 -2.90 9.84 -26.73 -0.26 -3.16 16 23 C -0.17 -2.59 9.68 -26.69 -0.26 -2.85 16 24 C -0.07 -0.79 9.05 -39.61 -0.36 -1.15 16 25 C -0.20 -2.20 9.04 -39.43 -0.36 -2.55 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.13 1.32 8.03 -52.49 -0.42 0.90 16 31 H 0.39 5.79 6.85 -40.82 -0.28 5.51 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.10 1.28 8.07 -51.92 -0.42 0.87 16 36 H 0.12 2.44 5.26 -51.93 -0.27 2.16 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.10 1.66 6.40 -51.93 -0.33 1.33 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.13 1.35 6.89 -52.49 -0.36 0.99 16 41 H 0.13 1.09 6.30 -52.48 -0.33 0.76 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -32.15 338.53 -8.28 -40.42 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.63 Total: 6.95 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.13 Total: -14.67 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.53 Total: -38.17 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.13 Total: -16.72 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.15 -8.28 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.040 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds