Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35904 * 117.00275 * 2 1 4 4 C 1.38728 * 120.05663 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94551 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05415 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94317 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47022 * 339.99832 * 7 6 5 9 9 N 1.46505 * 109.46976 * 219.99975 * 7 6 5 10 10 C 1.34771 * 119.99973 * 155.00146 * 9 7 6 11 11 O 1.21281 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00042 * 180.02562 * 10 9 7 13 13 C 1.50695 * 109.47342 * 179.97438 * 12 10 9 14 14 H 1.08006 * 120.00171 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00208 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00229 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47340 * 89.99591 * 17 15 13 19 19 H 1.48495 * 109.47222 * 210.00106 * 17 15 13 20 20 H 1.48504 * 109.46948 * 329.99903 * 17 15 13 21 21 C 1.52996 * 109.47193 * 100.00315 * 7 6 5 22 22 C 1.53000 * 117.49997 * 185.00008 * 21 7 6 23 23 C 1.53002 * 60.02940 * 252.49592 * 22 21 7 24 24 C 1.38262 * 120.10981 * 0.27067 * 6 5 4 25 25 C 1.38148 * 120.05643 * 359.45706 * 24 6 5 26 26 H 1.08995 * 109.47286 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47230 * 300.00476 * 1 2 3 28 28 H 1.09004 * 109.46930 * 60.00003 * 1 2 3 29 29 H 1.08004 * 120.03025 * 359.95810 * 4 3 2 30 30 H 1.07996 * 119.97718 * 179.97438 * 5 4 3 31 31 H 0.97007 * 119.99871 * 334.99945 * 9 7 6 32 32 H 1.08999 * 109.46747 * 299.99734 * 12 10 9 33 33 H 1.09001 * 109.47279 * 59.99612 * 12 10 9 34 34 H 0.96996 * 120.00382 * 180.02562 * 16 15 13 35 35 H 1.09008 * 115.56055 * 330.68521 * 21 7 6 36 36 H 1.09002 * 117.49833 * 359.97438 * 22 21 7 37 37 H 1.09002 * 117.49953 * 144.99738 * 22 21 7 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 40 40 H 1.08000 * 119.97341 * 179.70041 * 24 6 5 41 41 H 1.08006 * 120.02769 * 180.27231 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 -0.0017 8 1 5.0116 4.9040 0.3495 9 7 3.2654 5.9346 0.8858 10 6 3.9099 6.9781 1.4444 11 8 5.0867 7.1585 1.2128 12 6 3.1687 7.9201 2.3578 13 6 4.1097 8.9912 2.8456 14 1 5.1416 8.9898 2.5265 15 6 3.6536 9.9732 3.6993 16 7 2.3970 9.9753 4.0874 17 14 4.8199 11.3014 4.3034 18 1 4.7897 12.4513 3.3643 19 1 4.3983 11.7536 5.6535 20 1 6.1990 10.7549 4.3727 21 6 3.9940 5.5857 -1.4226 22 6 4.7500 6.8951 -1.6565 23 6 3.2201 6.8828 -1.6705 24 6 1.9212 3.6048 0.0051 25 6 1.2915 2.3751 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 4.0209 0.3799 0.0016 30 1 5.1345 2.5750 0.0008 31 1 2.3243 5.7901 1.0713 32 1 2.3444 8.3806 1.8132 33 1 2.7762 7.3659 3.2104 34 1 2.0760 10.6663 4.6877 35 1 4.0075 4.8467 -2.2239 36 1 5.2415 7.3527 -0.7979 37 1 5.2611 7.0176 -2.6114 38 1 2.7054 7.3323 -0.8213 39 1 2.7248 6.9969 -2.6347 40 1 1.3343 4.5114 0.0096 41 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -44.259744 kcal Electronic energy + Delta-G solvation = -22581.626084 eV Core-core repulsion = 19233.862355 eV Total energy + Delta-G solvation = -3347.763729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51158 -40.66101 -38.79138 -37.59060 -35.07667 -34.87519 -32.08573 -32.03482 -30.68100 -28.49381 -27.03077 -25.45854 -23.72346 -23.17141 -22.65444 -21.55180 -20.75038 -19.15090 -18.51659 -17.93871 -17.39211 -17.15310 -16.69376 -16.59414 -16.42192 -15.80289 -15.50700 -15.00167 -14.79303 -14.68211 -14.35038 -14.10796 -14.04266 -13.58860 -13.15659 -13.03438 -12.85593 -12.72100 -12.62313 -12.60625 -12.29540 -12.02244 -11.91579 -11.73599 -11.43976 -11.23736 -10.90694 -10.61739 -10.44075 -9.97744 -9.89547 -9.08700 -8.24440 -6.31042 0.36758 0.39342 1.40199 1.40688 1.53324 1.92510 2.30637 2.39232 2.48580 2.76642 3.00960 3.11217 3.58431 3.83430 3.94892 4.00890 4.11493 4.23568 4.30950 4.35045 4.41920 4.42268 4.51229 4.57362 4.66568 4.76936 4.83248 4.83622 5.01882 5.07337 5.10049 5.24181 5.26055 5.28413 5.37626 5.44456 5.52293 5.70751 5.77267 5.79630 6.07076 6.44810 6.72012 6.85872 7.35510 7.56194 8.87762 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.003574 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.131570 B = 7832.576804 C = 8475.871813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.157 4.157 5 C -0.072 4.072 6 C -0.127 4.127 7 C 0.220 3.780 8 H 0.075 0.925 9 N -0.720 5.720 10 C 0.523 3.477 11 O -0.570 6.570 12 C 0.008 3.992 13 C -0.532 4.532 14 H 0.056 0.944 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.149 4.149 22 C -0.199 4.199 23 C -0.171 4.171 24 C -0.072 4.072 25 C -0.204 4.204 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.406 0.594 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -19.063 -11.637 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.176 4.176 5 C -0.090 4.090 6 C -0.128 4.128 7 C 0.116 3.884 8 H 0.093 0.907 9 N -0.374 5.374 10 C 0.313 3.687 11 O -0.449 6.449 12 C -0.031 4.031 13 C -0.570 4.570 14 H 0.074 0.926 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.168 4.168 22 C -0.236 4.236 23 C -0.208 4.208 24 C -0.091 4.091 25 C -0.223 4.223 26 H 0.137 0.863 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.243 0.757 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.838 -19.039 -11.681 22.854 hybrid contribution -0.189 1.004 0.612 1.191 sum -5.027 -18.035 -11.069 21.750 Atomic orbital electron populations 1.23337 0.76533 1.05547 1.02247 1.86043 1.23392 1.26739 1.88627 1.19237 0.92686 0.84663 0.96293 1.20580 0.91749 0.98804 1.06435 1.20974 1.00650 0.90574 0.96813 1.19672 0.94247 0.93533 1.05376 1.19132 0.95553 0.85642 0.88087 0.90714 1.46185 1.14307 1.27989 1.48879 1.21306 0.87280 0.80845 0.79293 1.90464 1.18038 1.73936 1.62422 1.19061 0.96318 0.93535 0.94207 1.21359 0.97023 1.10536 1.28098 0.92553 1.25770 0.96904 1.00057 0.96150 1.70029 1.15768 1.35483 1.35231 0.85490 0.78973 0.78997 0.77854 1.19731 1.19990 1.19899 1.22734 1.05704 0.91100 0.97269 1.23248 0.95290 1.01627 1.03420 1.22943 0.94328 1.00597 1.02963 1.20878 0.93618 0.97945 0.96643 1.21410 1.01164 0.91558 1.08149 0.86321 0.91960 0.91621 0.83897 0.84084 0.75712 0.94207 0.94469 0.92474 0.85502 0.89796 0.87844 0.90354 0.87192 0.84860 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.30 10.50 -92.47 -0.97 -7.27 16 3 C 0.12 2.40 6.69 22.50 0.15 2.55 16 4 C -0.16 -3.23 9.99 22.36 0.22 -3.01 16 5 C -0.07 -1.56 9.66 22.26 0.22 -1.34 16 6 C -0.13 -3.06 4.91 -19.85 -0.10 -3.15 16 7 C 0.22 6.45 2.61 44.24 0.12 6.56 16 8 H 0.07 2.52 7.43 -2.39 -0.02 2.50 16 9 N -0.72 -24.25 3.69 -446.11 -1.65 -25.89 16 10 C 0.52 23.53 6.50 87.66 0.57 24.10 16 11 O -0.57 -29.06 12.44 -3.03 -0.04 -29.09 16 12 C 0.01 0.43 5.46 29.10 0.16 0.59 16 13 C -0.53 -31.35 8.92 25.60 0.23 -31.12 16 14 H 0.06 3.48 6.75 -2.91 -0.02 3.46 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 17 Si 0.96 45.62 29.54 68.60 2.03 47.64 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 21 C -0.15 -4.03 5.72 -10.77 -0.06 -4.09 16 22 C -0.20 -6.34 9.84 30.60 0.30 -6.04 16 23 C -0.17 -4.93 9.68 30.62 0.30 -4.63 16 24 C -0.07 -1.55 9.05 22.25 0.20 -1.35 16 25 C -0.20 -3.90 9.04 22.37 0.20 -3.70 16 26 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 28 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 29 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.14 2.69 8.03 -2.91 -0.02 2.66 16 31 H 0.41 11.81 6.85 -92.70 -0.64 11.18 16 32 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.13 2.86 8.07 -2.38 -0.02 2.84 16 36 H 0.08 3.44 5.26 -2.39 -0.01 3.43 16 37 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.08 2.61 6.40 -2.39 -0.02 2.59 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.13 2.59 6.89 -2.91 -0.02 2.57 16 41 H 0.15 2.10 6.30 -2.91 -0.02 2.09 16 Total: -1.00 -69.96 338.53 4.15 -65.81 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.41 Total: 25.20 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.08 Total: -22.32 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -1.36 Total: -79.97 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -1.01 Total: -36.36 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.96 4.15 -65.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.555 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds