Wall clock time and date at job start Tue Mar 31 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.53001 * 109.47477 * 270.27752 * 8 7 6 10 10 N 1.46496 * 109.47243 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00231 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99747 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00084 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47096 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47477 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99744 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00264 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00121 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47126 * 89.99528 * 19 17 15 21 21 H 1.48492 * 109.47232 * 209.99531 * 19 17 15 22 22 H 1.48496 * 109.47048 * 329.99958 * 19 17 15 23 23 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 24 24 C 1.37892 * 120.16928 * 359.71584 * 23 7 6 25 25 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 26 26 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 27 27 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 28 28 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 30 30 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 31 31 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 32 32 H 1.08997 * 109.47242 * 300.00089 * 9 8 7 33 33 H 1.09003 * 109.46379 * 60.00082 * 9 8 7 34 34 H 0.97008 * 119.99870 * 0.02562 * 10 9 8 35 35 H 1.08997 * 109.47147 * 299.99758 * 13 11 10 36 36 H 1.09003 * 109.47440 * 60.00342 * 13 11 10 37 37 H 1.08997 * 109.47242 * 300.00089 * 14 13 11 38 38 H 1.09007 * 109.46814 * 59.99916 * 14 13 11 39 39 H 0.97006 * 119.99945 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.91724 * 179.74709 * 23 7 6 41 41 H 1.08001 * 120.08323 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6369 -5.4188 -1.4463 10 7 5.3700 -6.6872 -1.4473 11 6 5.7078 -7.2694 -2.6149 12 8 5.4046 -6.7434 -3.6648 13 6 6.4613 -8.5744 -2.6159 14 6 6.7169 -9.0147 -4.0587 15 6 7.4710 -10.3194 -4.0598 16 1 7.7413 -10.7876 -3.1249 17 6 7.8167 -10.9149 -5.2543 18 7 7.4879 -10.3445 -6.3928 19 14 8.7521 -12.5319 -5.2556 20 1 7.7880 -13.6614 -5.2571 21 1 9.6063 -12.6086 -6.4678 22 1 9.6053 -12.6110 -4.0429 23 6 2.2439 -3.6777 -0.0029 24 6 1.5473 -2.4877 -0.0019 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 4.1856 -0.3457 0.0012 29 1 5.4036 -2.4818 -0.0110 30 1 5.3337 -4.8486 0.5109 31 1 3.7922 -5.7387 0.5095 32 1 3.6847 -5.5486 -1.9606 33 1 5.2262 -4.6586 -1.9591 34 1 5.6122 -7.1080 -0.6075 35 1 7.4133 -8.4447 -2.1013 36 1 5.8719 -9.3348 -2.1035 37 1 5.7647 -9.1445 -4.5731 38 1 7.3062 -8.2544 -4.5716 39 1 7.7308 -10.7637 -7.2333 40 1 1.7082 -4.6154 -0.0035 41 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152226473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:28 Heat of formation + Delta-G solvation = -73.578648 kcal Electronic energy + Delta-G solvation = -20932.437020 eV Core-core repulsion = 17583.401929 eV Total energy + Delta-G solvation = -3349.035092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43748 -39.25873 -38.65826 -35.42502 -33.44909 -33.05720 -31.71884 -31.04930 -30.39527 -28.50412 -25.86011 -24.20278 -22.98417 -22.15136 -21.41428 -20.17243 -19.60941 -17.43186 -16.85924 -16.30114 -15.99692 -15.67868 -15.38378 -15.35681 -15.26547 -14.65443 -14.45431 -14.30992 -14.02705 -13.73793 -13.39842 -12.96179 -12.65874 -12.57895 -12.35334 -12.22085 -11.96187 -11.93166 -11.63359 -11.23975 -11.16162 -10.92824 -10.60169 -10.15317 -9.96079 -9.67134 -9.38453 -9.24848 -9.14393 -8.98659 -8.81891 -8.32217 -5.96226 -4.00742 0.24381 0.99940 1.99811 3.24811 3.32773 3.33074 3.39125 3.41612 3.54538 3.65137 4.31823 4.44602 4.49266 4.54365 4.62968 4.75302 4.81928 4.93213 4.94933 5.04260 5.13432 5.25755 5.38616 5.43470 5.52523 5.56837 5.59693 5.72576 5.87464 5.94815 6.01282 6.18150 6.22459 6.23603 6.48551 6.68201 6.88971 7.11745 7.74117 7.86069 7.86159 8.07097 8.38438 8.76971 9.07953 9.62772 11.14690 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046630 B = 0.002019 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.326199 B =13862.231273 C =13986.212514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.461 6.461 4 C -0.180 4.180 5 C -0.058 4.058 6 C -0.126 4.126 7 C -0.043 4.043 8 C -0.098 4.098 9 C 0.125 3.875 10 N -0.746 5.746 11 C 0.509 3.491 12 O -0.534 6.534 13 C -0.130 4.130 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.127 4.127 24 C -0.070 4.070 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.286 16.619 18.739 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.274 3.726 3 O -0.337 6.337 4 C -0.181 4.181 5 C -0.076 4.076 6 C -0.144 4.144 7 C -0.044 4.044 8 C -0.135 4.135 9 C 0.001 3.999 10 N -0.401 5.401 11 C 0.297 3.703 12 O -0.409 6.409 13 C -0.170 4.170 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.145 4.145 24 C -0.089 4.089 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.178 17.540 17.740 28.214 hybrid contribution 0.554 -1.173 0.348 1.343 sum -12.624 16.367 18.088 27.467 Atomic orbital electron populations 1.22245 0.93727 1.05070 1.04785 1.22536 0.91721 0.87615 0.70712 1.90544 1.72180 1.34395 1.36625 1.20521 0.94675 0.94777 1.08118 1.21421 0.93174 0.98717 0.94317 1.21110 1.00522 0.91540 1.01263 1.20034 0.93867 0.94842 0.95641 1.20908 1.00873 0.94259 0.97509 1.21172 0.97249 0.86566 0.94914 1.46210 1.60256 1.24258 1.09376 1.21580 0.78697 0.87322 0.82667 1.90677 1.53744 1.65022 1.31453 1.21866 0.98876 0.91632 1.04611 1.18903 0.97689 0.95841 0.87698 1.21223 1.36417 1.06562 0.92367 0.92592 1.25035 0.96107 0.97643 0.95669 1.70001 1.46533 1.38997 0.97278 0.86581 0.79849 0.83955 0.77494 1.20684 1.21226 1.19903 1.21094 0.93607 0.98462 1.01376 1.21465 1.00122 0.91371 0.95903 0.88413 0.89354 0.89395 0.84900 0.85109 0.89837 0.89814 0.91618 0.91638 0.76896 0.90224 0.90226 0.95833 0.95828 0.92946 0.85074 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.96 9.76 36.00 0.35 -0.61 16 2 C 0.40 3.41 7.23 -30.69 -0.22 3.18 16 3 O -0.46 -5.60 17.09 5.57 0.10 -5.51 16 4 C -0.18 -1.54 5.87 -105.06 -0.62 -2.15 16 5 C -0.06 -0.53 9.60 -39.11 -0.38 -0.91 16 6 C -0.13 -1.07 9.68 -39.65 -0.38 -1.45 16 7 C -0.04 -0.35 5.14 -104.50 -0.54 -0.89 16 8 C -0.10 -0.74 5.45 -27.88 -0.15 -0.89 16 9 C 0.13 1.44 5.66 -4.04 -0.02 1.42 16 10 N -0.75 -9.82 5.56 -60.30 -0.33 -10.15 16 11 C 0.51 9.63 7.83 -10.99 -0.09 9.55 16 12 O -0.53 -12.63 15.98 5.56 0.09 -12.54 16 13 C -0.13 -2.60 5.64 -27.88 -0.16 -2.75 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.86 16 15 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.13 -0.94 9.68 -39.64 -0.38 -1.32 16 24 C -0.07 -0.48 9.37 -39.10 -0.37 -0.85 16 25 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.27 6.47 -51.93 -0.34 -0.07 16 28 H 0.13 1.19 7.65 -52.49 -0.40 0.79 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.08 0.53 8.08 -51.92 -0.42 0.11 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.87 8.47 -40.82 -0.35 3.53 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.53 6.36 -52.49 -0.33 0.20 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -36.57 354.82 -8.59 -45.16 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.02 Total: -1.67 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.48 Total: -10.50 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.40 Total: -36.88 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.18 Total: -18.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.57 -8.59 -45.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152226473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.421 kcal (2) G-P(sol) polarization free energy of solvation -36.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds