Wall clock time and date at job start Tue Mar 31 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.53001 * 109.47477 * 270.27752 * 8 7 6 10 10 N 1.46496 * 109.47243 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00231 * 180.02562 * 10 9 8 12 12 O 1.21278 * 119.99747 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00084 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47096 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47477 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99744 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00264 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00121 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47126 * 89.99528 * 19 17 15 21 21 H 1.48492 * 109.47232 * 209.99531 * 19 17 15 22 22 H 1.48496 * 109.47048 * 329.99958 * 19 17 15 23 23 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 24 24 C 1.37892 * 120.16928 * 359.71584 * 23 7 6 25 25 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 26 26 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 27 27 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 28 28 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 30 30 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 31 31 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 32 32 H 1.08997 * 109.47242 * 300.00089 * 9 8 7 33 33 H 1.09003 * 109.46379 * 60.00082 * 9 8 7 34 34 H 0.97008 * 119.99870 * 0.02562 * 10 9 8 35 35 H 1.08997 * 109.47147 * 299.99758 * 13 11 10 36 36 H 1.09003 * 109.47440 * 60.00342 * 13 11 10 37 37 H 1.08997 * 109.47242 * 300.00089 * 14 13 11 38 38 H 1.09007 * 109.46814 * 59.99916 * 14 13 11 39 39 H 0.97006 * 119.99945 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.91724 * 179.74709 * 23 7 6 41 41 H 1.08001 * 120.08323 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6369 -5.4188 -1.4463 10 7 5.3700 -6.6872 -1.4473 11 6 5.7078 -7.2694 -2.6149 12 8 5.4046 -6.7434 -3.6648 13 6 6.4613 -8.5744 -2.6159 14 6 6.7169 -9.0147 -4.0587 15 6 7.4710 -10.3194 -4.0598 16 1 7.7413 -10.7876 -3.1249 17 6 7.8167 -10.9149 -5.2543 18 7 7.4879 -10.3445 -6.3928 19 14 8.7521 -12.5319 -5.2556 20 1 7.7880 -13.6614 -5.2571 21 1 9.6063 -12.6086 -6.4678 22 1 9.6053 -12.6110 -4.0429 23 6 2.2439 -3.6777 -0.0029 24 6 1.5473 -2.4877 -0.0019 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 4.1856 -0.3457 0.0012 29 1 5.4036 -2.4818 -0.0110 30 1 5.3337 -4.8486 0.5109 31 1 3.7922 -5.7387 0.5095 32 1 3.6847 -5.5486 -1.9606 33 1 5.2262 -4.6586 -1.9591 34 1 5.6122 -7.1080 -0.6075 35 1 7.4133 -8.4447 -2.1013 36 1 5.8719 -9.3348 -2.1035 37 1 5.7647 -9.1445 -4.5731 38 1 7.3062 -8.2544 -4.5716 39 1 7.7308 -10.7637 -7.2333 40 1 1.7082 -4.6154 -0.0035 41 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152226473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:27 Heat of formation + Delta-G solvation = -97.907195 kcal Electronic energy + Delta-G solvation = -20933.491985 eV Core-core repulsion = 17583.401929 eV Total energy + Delta-G solvation = -3350.090057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10261 -40.63113 -39.43603 -36.52202 -35.53110 -33.98637 -32.95939 -32.27254 -31.09078 -29.35662 -27.60776 -25.27162 -23.59930 -23.42434 -22.66157 -21.20297 -20.69587 -18.81174 -18.04343 -17.39771 -17.05511 -17.02696 -16.53566 -16.44587 -16.05673 -15.99476 -15.55248 -15.06179 -14.85837 -14.80049 -14.47956 -14.17341 -13.94377 -13.80597 -13.22816 -13.10645 -13.02137 -12.81196 -12.73639 -12.61166 -12.45531 -12.43461 -11.89995 -11.86633 -11.62261 -11.29378 -10.82899 -10.73065 -10.56165 -10.07567 -9.95852 -9.79505 -8.17061 -6.31152 -0.39475 0.40699 1.36386 1.43106 1.45885 1.56801 1.73897 2.26985 2.45912 2.79189 3.09212 3.15924 3.75186 3.82521 3.98616 4.02396 4.08054 4.17771 4.20254 4.40193 4.43897 4.53266 4.56859 4.59031 4.63136 4.65261 4.85994 4.90959 5.04170 5.08695 5.10860 5.15298 5.29371 5.42425 5.47530 5.53958 5.57240 5.64928 5.86951 5.90859 6.18761 6.49741 6.65257 6.87904 7.37914 7.39898 8.95589 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046630 B = 0.002019 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.326199 B =13862.231273 C =13986.212514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.393 3.607 3 O -0.510 6.510 4 C -0.196 4.196 5 C -0.080 4.080 6 C -0.136 4.136 7 C -0.052 4.052 8 C -0.083 4.083 9 C 0.125 3.875 10 N -0.717 5.717 11 C 0.509 3.491 12 O -0.593 6.593 13 C -0.119 4.119 14 C 0.040 3.960 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.255 1.255 23 C -0.131 4.131 24 C -0.063 4.063 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.419 0.581 35 H 0.105 0.895 36 H 0.107 0.893 37 H -0.018 1.018 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.153 0.847 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 14.789 21.483 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.275 3.725 3 O -0.389 6.389 4 C -0.197 4.197 5 C -0.098 4.098 6 C -0.154 4.154 7 C -0.053 4.053 8 C -0.120 4.120 9 C 0.001 3.999 10 N -0.371 5.371 11 C 0.298 3.702 12 O -0.473 6.473 13 C -0.159 4.159 14 C 0.002 3.998 15 C -0.580 4.580 16 H 0.096 0.904 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.178 1.178 23 C -0.149 4.149 24 C -0.081 4.081 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.257 0.743 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.000 1.000 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.952 15.701 20.579 29.405 hybrid contribution 0.748 -0.551 -0.487 1.049 sum -13.205 15.150 20.091 28.417 Atomic orbital electron populations 1.22287 0.90405 1.06209 1.06364 1.23180 0.93573 0.86878 0.68845 1.90528 1.73411 1.35805 1.39176 1.20740 0.94584 0.95735 1.08645 1.21506 0.94018 0.98709 0.95548 1.21249 1.01052 0.91634 1.01422 1.20162 0.94525 0.94686 0.95900 1.20814 1.02140 0.94447 0.94628 1.21260 0.95989 0.84983 0.97673 1.45862 1.58479 1.24255 1.08519 1.21360 0.78460 0.87068 0.83336 1.90664 1.56299 1.66416 1.33903 1.21638 1.01005 0.93063 1.00195 1.18705 0.94708 0.94818 0.91542 1.21735 1.36038 1.06930 0.93309 0.90428 1.26168 0.97198 1.02116 0.95186 1.70185 1.48199 1.41272 0.98201 0.85301 0.78372 0.78429 0.78011 1.19677 1.21338 1.17839 1.21443 0.93427 0.99580 1.00462 1.21814 1.01759 0.90297 0.94192 0.86356 0.89393 0.87062 0.86040 0.84481 0.88318 0.87438 0.92666 0.93432 0.74290 0.87649 0.87458 0.99998 1.00139 0.92905 0.82900 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 9.76 71.24 0.69 -0.77 16 2 C 0.39 6.67 7.23 28.03 0.20 6.88 16 3 O -0.51 -13.00 17.09 -2.97 -0.05 -13.05 16 4 C -0.20 -3.23 5.87 -20.15 -0.12 -3.35 16 5 C -0.08 -1.50 9.60 22.58 0.22 -1.28 16 6 C -0.14 -2.24 9.68 22.23 0.22 -2.03 16 7 C -0.05 -0.75 5.14 -19.79 -0.10 -0.85 16 8 C -0.08 -1.01 5.45 29.85 0.16 -0.85 16 9 C 0.12 2.69 5.66 86.38 0.49 3.18 16 10 N -0.72 -17.33 5.56 -463.07 -2.57 -19.90 16 11 C 0.51 19.09 7.83 87.66 0.69 19.78 16 12 O -0.59 -29.10 15.98 -3.02 -0.05 -29.15 16 13 C -0.12 -4.64 5.64 29.85 0.17 -4.47 16 14 C 0.04 2.22 4.26 29.85 0.13 2.34 16 15 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 18 N -0.94 -59.71 13.29 21.45 0.28 -59.43 16 19 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 23 C -0.13 -1.57 9.68 22.23 0.22 -1.35 16 24 C -0.06 -0.70 9.37 22.58 0.21 -0.49 16 25 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 0.30 6.47 -2.39 -0.02 0.29 16 28 H 0.12 2.44 7.65 -2.91 -0.02 2.42 16 29 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.10 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.11 0.87 8.08 -2.38 -0.02 0.85 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.42 6.57 8.47 -92.70 -0.79 5.79 16 35 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 37 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 38 H -0.02 -1.25 8.10 -2.38 -0.02 -1.27 16 39 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 40 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.17 0.66 6.36 -2.91 -0.02 0.64 16 Total: -1.00 -85.17 354.82 3.75 -81.43 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.25 Total: 7.78 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 3.86 Total: -13.79 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -2.29 Total: -79.33 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.10 Total: -42.20 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -85.17 3.75 -81.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152226473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.481 kcal (2) G-P(sol) polarization free energy of solvation -85.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds