Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47049 * 2 1 4 4 C 1.42905 * 113.99564 * 180.02562 * 3 2 1 5 5 C 1.53950 * 113.73735 * 246.67369 * 4 3 2 6 6 N 1.47581 * 86.11656 * 222.04923 * 5 4 3 7 7 C 1.34775 * 134.49422 * 204.64503 * 6 5 4 8 8 O 1.21285 * 119.99853 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99935 * 359.97438 * 7 6 5 10 10 H 1.09000 * 109.47718 * 300.00971 * 9 7 6 11 11 C 1.50700 * 109.46666 * 60.00725 * 9 7 6 12 12 H 1.07997 * 120.00388 * 235.35266 * 11 9 7 13 13 C 1.37880 * 120.00127 * 55.35209 * 11 9 7 14 14 N 1.31515 * 120.00025 * 1.98316 * 13 11 9 15 15 Si 1.86804 * 119.99970 * 181.98167 * 13 11 9 16 16 H 1.48497 * 109.47366 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47101 * 120.00349 * 15 13 11 18 18 H 1.48498 * 109.47050 * 239.99758 * 15 13 11 19 19 C 1.50700 * 109.47153 * 180.02562 * 9 7 6 20 20 C 1.38229 * 120.00306 * 226.93647 * 19 9 7 21 21 C 1.38233 * 120.00218 * 179.79260 * 20 19 9 22 22 C 1.38239 * 119.99806 * 0.43886 * 21 20 19 23 23 C 1.38230 * 119.99986 * 359.81386 * 22 21 20 24 24 C 1.38240 * 119.99468 * 47.21415 * 19 9 7 25 25 C 1.47584 * 91.01506 * 24.64064 * 6 5 4 26 26 H 1.09004 * 109.47107 * 59.99589 * 1 2 3 27 27 H 1.08991 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46738 * 299.99533 * 1 2 3 29 29 H 1.09004 * 109.47218 * 240.00541 * 2 1 3 30 30 H 1.08997 * 109.47716 * 120.00210 * 2 1 3 31 31 H 1.08994 * 112.94646 * 18.40826 * 4 3 2 32 32 H 1.08992 * 113.77096 * 336.35158 * 5 4 3 33 33 H 1.09006 * 113.76809 * 107.75136 * 5 4 3 34 34 H 0.96997 * 120.00373 * 179.97438 * 14 13 11 35 35 H 1.08003 * 120.00194 * 0.02562 * 20 19 9 36 36 H 1.08005 * 120.00700 * 180.27631 * 21 20 19 37 37 H 1.08001 * 120.00242 * 179.83820 * 22 21 20 38 38 H 1.08001 * 120.00458 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00353 * 359.97438 * 24 19 9 40 40 H 1.08996 * 113.77303 * 221.05476 * 25 6 5 41 41 H 1.09004 * 113.76316 * 89.65870 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.0052 2.0651 1.2933 6 7 4.9077 2.8339 0.4144 7 6 6.1182 3.4052 0.5711 8 8 6.6362 3.9923 -0.3552 9 6 6.8277 3.3156 1.8976 10 1 6.2149 3.7809 2.6697 11 6 7.0606 1.8680 2.2458 12 1 6.7017 1.4740 3.1851 13 6 7.7319 1.0465 1.3651 14 7 8.2031 1.5353 0.2388 15 14 7.9721 -0.7608 1.7719 16 1 7.3521 -1.0587 3.0880 17 1 7.3306 -1.5938 0.7231 18 1 9.4242 -1.0669 1.8275 19 6 8.1513 4.0306 1.8087 20 6 9.2968 3.4269 2.2924 21 6 10.5116 4.0809 2.2070 22 6 10.5794 5.3425 1.6459 23 6 9.4330 5.9484 1.1669 24 6 8.2188 5.2926 1.2485 25 6 3.9522 2.7257 -0.7052 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9295 0.5443 -0.3179 32 1 3.2949 2.6831 1.8423 33 1 4.5194 1.3416 1.9261 34 1 8.6757 0.9575 -0.3806 35 1 9.2434 2.4426 2.7338 36 1 11.4075 3.6075 2.5809 37 1 11.5281 5.8547 1.5815 38 1 9.4858 6.9342 0.7289 39 1 7.3232 5.7659 0.8742 40 1 4.4239 2.5298 -1.6680 41 1 3.2262 3.5380 -0.7431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159619903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = -16.637603 kcal Electronic energy + Delta-G solvation = -23457.642260 eV Core-core repulsion = 20111.076318 eV Total energy + Delta-G solvation = -3346.565943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63589 -38.42063 -37.15554 -35.75192 -33.62191 -31.14996 -30.81753 -29.66975 -28.44108 -26.72062 -25.53965 -23.83898 -22.80585 -21.43751 -21.22404 -20.07190 -18.18758 -17.02350 -16.81860 -15.78998 -15.69417 -15.28612 -14.93128 -14.57738 -14.33717 -13.84513 -13.61846 -13.54807 -13.00040 -12.63796 -12.33197 -12.27959 -12.22385 -12.03853 -11.81458 -11.72796 -11.44831 -11.26753 -11.05925 -10.95087 -10.77897 -10.66923 -10.44224 -10.04963 -9.67632 -9.38199 -9.26811 -8.73435 -8.32798 -7.70658 -7.68309 -7.39571 -6.15325 -4.30392 2.54739 2.62198 3.14344 3.25682 3.26574 3.55334 3.96414 4.17803 4.31753 4.79127 5.00375 5.06236 5.10067 5.13794 5.27595 5.34983 5.56238 5.68498 5.86240 5.86796 5.88805 5.95453 6.00363 6.03063 6.07223 6.17881 6.26782 6.38009 6.44286 6.68497 6.70630 6.86382 7.05208 7.14211 7.23494 7.38747 7.55995 7.64600 7.67824 7.79022 8.17297 8.27160 8.65239 8.85484 9.34267 9.62921 10.85486 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.005395 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.948063 B = 5188.869345 C = 6255.596367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.378 6.378 4 C 0.049 3.951 5 C 0.097 3.903 6 N -0.636 5.636 7 C 0.579 3.421 8 O -0.544 6.544 9 C 0.062 3.938 10 H 0.056 0.944 11 C -0.534 4.534 12 H 0.067 0.933 13 C 0.073 3.927 14 N -0.842 5.842 15 Si 0.883 3.117 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.281 1.281 19 C -0.015 4.015 20 C -0.064 4.064 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.101 4.101 25 C 0.108 3.892 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.264 0.736 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -1.481 1.850 9.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.296 6.296 4 C -0.009 4.009 5 C -0.027 4.027 6 N -0.375 5.375 7 C 0.372 3.628 8 O -0.419 6.419 9 C 0.041 3.959 10 H 0.074 0.926 11 C -0.572 4.572 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.475 5.475 15 Si 0.710 3.290 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.207 1.207 19 C -0.016 4.016 20 C -0.082 4.082 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.119 4.119 25 C -0.016 4.016 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.351 -0.943 1.181 8.487 hybrid contribution 0.454 -1.439 -0.181 1.520 sum -7.897 -2.382 1.000 8.309 Atomic orbital electron populations 1.21740 0.94073 1.01949 1.02980 1.22498 0.95240 0.84249 1.00201 1.87905 1.20933 1.26110 1.94641 1.24403 0.80145 0.98712 0.97680 1.23477 0.90461 0.94201 0.94546 1.49350 1.16837 1.57718 1.13611 1.20824 0.76684 0.73925 0.91409 1.90555 1.64007 1.43738 1.43646 1.17824 0.90315 0.97189 0.90555 0.92593 1.20676 1.39388 0.92219 1.04896 0.91461 1.25057 0.94953 0.98376 0.95049 1.70081 1.33652 1.35096 1.08638 0.86669 0.78346 0.85449 0.78571 1.19387 1.20987 1.20695 1.19804 0.96131 0.91655 0.93995 1.21128 0.90933 0.98922 0.97240 1.20990 0.97583 0.95516 1.02468 1.20775 0.97179 0.96245 1.02063 1.20821 0.93402 0.99452 1.02523 1.20985 0.97015 0.95494 0.98452 1.23101 0.90084 0.95289 0.93126 0.92025 0.91405 0.91875 0.93504 0.93184 0.88763 0.90657 0.88723 0.92540 0.85440 0.88013 0.88174 0.88060 0.87549 0.90719 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.62 6.50 37.16 0.24 0.86 16 3 O -0.38 -5.38 10.37 -35.23 -0.37 -5.74 16 4 C 0.05 0.78 4.50 -25.80 -0.12 0.66 16 5 C 0.10 1.67 8.11 -2.97 -0.02 1.65 16 6 N -0.64 -13.33 3.56 -178.62 -0.64 -13.96 16 7 C 0.58 14.25 5.68 -10.99 -0.06 14.18 16 8 O -0.54 -15.08 14.68 5.55 0.08 -15.00 16 9 C 0.06 1.49 2.61 -94.08 -0.25 1.25 16 10 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 11 C -0.53 -12.93 5.79 -34.44 -0.20 -13.13 16 12 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.84 4.01 -17.82 -0.07 1.77 16 14 N -0.84 -23.01 10.90 55.43 0.60 -22.40 16 15 Si 0.88 19.46 29.54 -169.99 -5.02 14.44 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.01 -0.36 4.51 -104.62 -0.47 -0.83 16 20 C -0.06 -1.51 8.21 -39.59 -0.32 -1.84 16 21 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 22 C -0.14 -2.90 10.05 -39.58 -0.40 -3.29 16 23 C -0.14 -3.01 10.05 -39.58 -0.40 -3.40 16 24 C -0.10 -2.35 8.21 -39.58 -0.33 -2.67 16 25 C 0.11 1.91 8.67 -2.97 -0.03 1.88 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.50 7.87 -51.93 -0.41 1.09 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.70 7.07 -51.93 -0.37 1.33 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.13 3.08 6.04 -52.48 -0.32 2.76 16 36 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.11 2.46 7.01 -52.49 -0.37 2.09 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -30.15 339.16 -8.74 -38.89 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.08 Total: 6.07 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.44 Total: -7.41 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.03 Total: -36.36 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.28 Total: -20.74 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.15 -8.74 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159619903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.254 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds