Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47049 * 2 1 4 4 C 1.42905 * 113.99564 * 180.02562 * 3 2 1 5 5 C 1.53950 * 113.73735 * 246.67369 * 4 3 2 6 6 N 1.47581 * 86.11656 * 222.04923 * 5 4 3 7 7 C 1.34775 * 134.49422 * 204.64503 * 6 5 4 8 8 O 1.21285 * 119.99853 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99935 * 359.97438 * 7 6 5 10 10 H 1.09000 * 109.47718 * 300.00971 * 9 7 6 11 11 C 1.50700 * 109.46666 * 60.00725 * 9 7 6 12 12 H 1.07997 * 120.00388 * 235.35266 * 11 9 7 13 13 C 1.37880 * 120.00127 * 55.35209 * 11 9 7 14 14 N 1.31515 * 120.00025 * 1.98316 * 13 11 9 15 15 Si 1.86804 * 119.99970 * 181.98167 * 13 11 9 16 16 H 1.48497 * 109.47366 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47101 * 120.00349 * 15 13 11 18 18 H 1.48498 * 109.47050 * 239.99758 * 15 13 11 19 19 C 1.50700 * 109.47153 * 180.02562 * 9 7 6 20 20 C 1.38229 * 120.00306 * 226.93647 * 19 9 7 21 21 C 1.38233 * 120.00218 * 179.79260 * 20 19 9 22 22 C 1.38239 * 119.99806 * 0.43886 * 21 20 19 23 23 C 1.38230 * 119.99986 * 359.81386 * 22 21 20 24 24 C 1.38240 * 119.99468 * 47.21415 * 19 9 7 25 25 C 1.47584 * 91.01506 * 24.64064 * 6 5 4 26 26 H 1.09004 * 109.47107 * 59.99589 * 1 2 3 27 27 H 1.08991 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46738 * 299.99533 * 1 2 3 29 29 H 1.09004 * 109.47218 * 240.00541 * 2 1 3 30 30 H 1.08997 * 109.47716 * 120.00210 * 2 1 3 31 31 H 1.08994 * 112.94646 * 18.40826 * 4 3 2 32 32 H 1.08992 * 113.77096 * 336.35158 * 5 4 3 33 33 H 1.09006 * 113.76809 * 107.75136 * 5 4 3 34 34 H 0.96997 * 120.00373 * 179.97438 * 14 13 11 35 35 H 1.08003 * 120.00194 * 0.02562 * 20 19 9 36 36 H 1.08005 * 120.00700 * 180.27631 * 21 20 19 37 37 H 1.08001 * 120.00242 * 179.83820 * 22 21 20 38 38 H 1.08001 * 120.00458 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00353 * 359.97438 * 24 19 9 40 40 H 1.08996 * 113.77303 * 221.05476 * 25 6 5 41 41 H 1.09004 * 113.76316 * 89.65870 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.0052 2.0651 1.2933 6 7 4.9077 2.8339 0.4144 7 6 6.1182 3.4052 0.5711 8 8 6.6362 3.9923 -0.3552 9 6 6.8277 3.3156 1.8976 10 1 6.2149 3.7809 2.6697 11 6 7.0606 1.8680 2.2458 12 1 6.7017 1.4740 3.1851 13 6 7.7319 1.0465 1.3651 14 7 8.2031 1.5353 0.2388 15 14 7.9721 -0.7608 1.7719 16 1 7.3521 -1.0587 3.0880 17 1 7.3306 -1.5938 0.7231 18 1 9.4242 -1.0669 1.8275 19 6 8.1513 4.0306 1.8087 20 6 9.2968 3.4269 2.2924 21 6 10.5116 4.0809 2.2070 22 6 10.5794 5.3425 1.6459 23 6 9.4330 5.9484 1.1669 24 6 8.2188 5.2926 1.2485 25 6 3.9522 2.7257 -0.7052 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9295 0.5443 -0.3179 32 1 3.2949 2.6831 1.8423 33 1 4.5194 1.3416 1.9261 34 1 8.6757 0.9575 -0.3806 35 1 9.2434 2.4426 2.7338 36 1 11.4075 3.6075 2.5809 37 1 11.5281 5.8547 1.5815 38 1 9.4858 6.9342 0.7289 39 1 7.3232 5.7659 0.8742 40 1 4.4239 2.5298 -1.6680 41 1 3.2262 3.5380 -0.7431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159619903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -33.855790 kcal Electronic energy + Delta-G solvation = -23458.388897 eV Core-core repulsion = 20111.076318 eV Total energy + Delta-G solvation = -3347.312579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20062 -40.01537 -38.68549 -37.22254 -35.49634 -32.67033 -32.07986 -31.37159 -30.04997 -28.40284 -27.00735 -25.67152 -23.67998 -23.02917 -22.83845 -21.71310 -19.85085 -18.69402 -18.17723 -17.39227 -17.20895 -16.82354 -16.67932 -16.10541 -15.77397 -15.41463 -15.24225 -14.97923 -14.48316 -14.07933 -13.95615 -13.86823 -13.67502 -13.55048 -13.11038 -13.04267 -12.95874 -12.76653 -12.64576 -12.48383 -12.26531 -12.05332 -11.87258 -11.77999 -11.44404 -11.17523 -10.66353 -10.45850 -10.20142 -9.39815 -9.36495 -9.12246 -8.07331 -6.26402 0.85399 0.91391 1.38300 1.44785 1.53257 2.08988 2.29348 2.44922 2.81392 3.19637 3.29958 3.46323 3.91189 4.08862 4.24344 4.30854 4.34474 4.37941 4.48460 4.50095 4.55400 4.57638 4.65132 4.71291 4.78395 4.82676 4.93801 5.00744 5.09141 5.09597 5.13581 5.33148 5.37352 5.43952 5.54123 5.70038 5.87711 5.93246 5.96443 6.25869 6.41171 6.51407 6.76139 7.12202 7.40763 7.79756 8.92512 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.005395 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.948063 B = 5188.869345 C = 6255.596367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.382 6.382 4 C 0.072 3.928 5 C 0.098 3.902 6 N -0.648 5.648 7 C 0.574 3.426 8 O -0.586 6.586 9 C 0.054 3.946 10 H 0.062 0.938 11 C -0.525 4.525 12 H 0.073 0.927 13 C 0.039 3.961 14 N -0.877 5.877 15 Si 0.938 3.062 16 H -0.255 1.255 17 H -0.286 1.286 18 H -0.288 1.288 19 C -0.037 4.037 20 C -0.085 4.085 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.121 4.121 25 C 0.103 3.897 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.255 0.745 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -2.098 2.566 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.300 6.300 4 C 0.013 3.987 5 C -0.025 4.025 6 N -0.386 5.386 7 C 0.367 3.633 8 O -0.466 6.466 9 C 0.033 3.967 10 H 0.080 0.920 11 C -0.562 4.562 12 H 0.091 0.909 13 C -0.165 4.165 14 N -0.512 5.512 15 Si 0.764 3.236 16 H -0.179 1.179 17 H -0.212 1.212 18 H -0.214 1.214 19 C -0.038 4.038 20 C -0.103 4.103 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.139 4.139 25 C -0.020 4.020 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.885 -1.587 1.934 9.230 hybrid contribution 0.525 -1.217 -0.379 1.378 sum -8.360 -2.804 1.555 8.954 Atomic orbital electron populations 1.21747 0.92196 1.03421 1.02919 1.22796 0.96760 0.82783 1.00878 1.87898 1.19351 1.28222 1.94532 1.23955 0.81306 0.97527 0.95882 1.23650 0.89897 0.93983 0.94938 1.49417 1.16564 1.56829 1.15781 1.20846 0.77616 0.73795 0.91063 1.90506 1.65565 1.45793 1.44762 1.17922 0.90787 0.97308 0.90671 0.92043 1.20825 1.38361 0.92374 1.04674 0.90934 1.25593 0.94671 1.01563 0.94703 1.70260 1.35150 1.35965 1.09798 0.85795 0.77707 0.81309 0.78779 1.17854 1.21238 1.21401 1.19927 0.96465 0.92366 0.95071 1.21119 0.91981 0.98777 0.98452 1.21332 0.97578 0.96040 1.01911 1.21193 0.98476 0.95757 1.00375 1.21194 0.92791 1.00568 1.01851 1.21040 0.97858 0.95684 0.99343 1.23279 0.89615 0.97133 0.91984 0.92127 0.89187 0.91895 0.92887 0.92508 0.88906 0.88560 0.89409 0.93527 0.86841 0.85379 0.84240 0.85219 0.88640 0.91923 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.04 0.90 6.50 71.98 0.47 1.37 16 3 O -0.38 -10.14 10.37 -148.98 -1.54 -11.69 16 4 C 0.07 2.21 4.50 31.26 0.14 2.35 16 5 C 0.10 3.29 8.11 86.48 0.70 3.99 16 6 N -0.65 -27.40 3.56 -841.24 -3.00 -30.40 16 7 C 0.57 28.97 5.68 87.66 0.50 29.47 16 8 O -0.59 -33.73 14.68 -3.04 -0.04 -33.77 16 9 C 0.05 2.66 2.61 -13.03 -0.03 2.62 16 10 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 11 C -0.52 -25.55 5.79 25.60 0.15 -25.40 16 12 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 13 C 0.04 1.95 4.01 84.66 0.34 2.29 16 14 N -0.88 -48.98 10.90 21.45 0.23 -48.75 16 15 Si 0.94 39.94 29.54 68.60 2.03 41.96 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 17 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 19 C -0.04 -1.85 4.51 -19.87 -0.09 -1.94 16 20 C -0.09 -4.04 8.21 22.27 0.18 -3.86 16 21 C -0.15 -6.16 10.05 22.27 0.22 -5.94 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 23 C -0.15 -5.93 10.05 22.27 0.22 -5.71 16 24 C -0.12 -5.70 8.21 22.27 0.18 -5.52 16 25 C 0.10 3.63 8.67 86.48 0.75 4.38 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 2.87 7.87 -2.39 -0.02 2.85 16 32 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.09 3.07 7.07 -2.38 -0.02 3.06 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.11 5.57 6.04 -2.91 -0.02 5.56 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.10 4.60 7.01 -2.91 -0.02 4.57 16 40 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -65.65 339.16 3.38 -62.27 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 1.01 Total: 28.88 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.70 Total: -8.51 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.76 Total: -79.15 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.59 Total: -45.46 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -65.65 3.38 -62.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159619903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.415 kcal (2) G-P(sol) polarization free energy of solvation -65.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds