Wall clock time and date at job start Tue Mar 31 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47001 * 2 1 4 4 C 1.46897 * 111.00226 * 293.45546 * 3 2 1 5 5 C 1.50700 * 109.47000 * 296.67880 * 4 3 2 6 6 H 1.08003 * 120.00293 * 4.67538 * 5 4 3 7 7 C 1.37878 * 119.99972 * 184.67443 * 5 4 3 8 8 N 1.31514 * 119.99901 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47183 * 59.99675 * 9 7 5 11 11 H 1.48499 * 109.47167 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46889 * 299.99884 * 9 7 5 13 13 C 1.46903 * 111.00122 * 169.49893 * 3 2 1 14 14 C 1.53009 * 109.47170 * 303.95612 * 13 3 2 15 15 C 1.52995 * 109.46996 * 299.99887 * 14 13 3 16 16 C 1.52993 * 109.47208 * 299.99810 * 15 14 13 17 17 S 1.81406 * 109.47327 * 180.02562 * 16 15 14 18 18 C 1.81396 * 101.92076 * 185.00310 * 17 16 15 19 19 O 1.42103 * 108.57640 * 299.48819 * 17 16 15 20 20 O 1.42094 * 108.57842 * 70.51238 * 17 16 15 21 21 C 1.53008 * 109.47272 * 60.00441 * 16 15 14 22 22 C 1.52993 * 109.47302 * 183.95637 * 13 3 2 23 23 H 1.08996 * 109.47019 * 58.40895 * 1 2 3 24 24 H 1.09002 * 109.47056 * 178.40495 * 1 2 3 25 25 H 1.09001 * 109.47462 * 298.41017 * 1 2 3 26 26 H 1.09001 * 109.47325 * 240.00282 * 2 1 3 27 27 H 1.09005 * 109.47503 * 120.00191 * 2 1 3 28 28 H 1.08995 * 109.47378 * 56.67995 * 4 3 2 29 29 H 1.09004 * 109.46864 * 176.68277 * 4 3 2 30 30 H 0.97001 * 119.99564 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.46954 * 63.95405 * 13 3 2 32 32 H 1.08993 * 109.46786 * 179.97438 * 14 13 3 33 33 H 1.09002 * 109.47010 * 59.99919 * 14 13 3 34 34 H 1.09000 * 109.47090 * 179.97438 * 15 14 13 35 35 H 1.09004 * 109.47322 * 59.99768 * 15 14 13 36 36 H 1.09001 * 109.47669 * 300.00312 * 16 15 14 37 37 H 1.08995 * 109.47435 * 59.99813 * 18 17 16 38 38 H 1.09002 * 109.46905 * 179.97438 * 18 17 16 39 39 H 1.08999 * 109.46938 * 299.99248 * 18 17 16 40 40 H 1.08992 * 109.46911 * 59.99475 * 21 16 15 41 41 H 1.08990 * 109.47017 * 180.02562 * 21 16 15 42 42 H 1.09002 * 109.47363 * 179.97438 * 22 13 3 43 43 H 1.09000 * 109.47332 * 299.99759 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6804 2.0633 -1.2581 5 6 2.3782 1.3759 -2.4033 6 1 2.9492 0.4764 -2.2262 7 6 2.2877 1.8953 -3.6773 8 7 1.5929 2.9909 -3.8930 9 14 3.1521 1.0428 -5.0971 10 1 2.6300 -0.3404 -5.2356 11 1 2.9015 1.7951 -6.3526 12 1 4.6125 0.9965 -4.8314 13 6 3.4664 1.4319 0.2500 14 6 3.7802 0.7170 1.5659 15 6 3.0419 1.4113 2.7120 16 6 3.4968 2.8693 2.8027 17 16 2.6219 3.6923 4.1621 18 6 3.1875 5.4070 3.9879 19 8 1.2268 3.6466 3.8961 20 8 3.1108 3.1771 5.3928 21 6 3.1830 3.5842 1.4868 22 6 3.9214 2.8898 0.3406 23 1 -0.3633 0.5383 -0.8753 24 1 -0.3633 -1.0273 -0.0286 25 1 -0.3634 0.4889 0.9039 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.6023 2.0237 -1.4131 29 1 2.0024 3.1035 -1.2082 30 1 1.5289 3.3560 -4.7893 31 1 3.9924 0.9372 -0.5666 32 1 4.8537 0.7515 1.7510 33 1 3.4561 -0.3217 1.5013 34 1 3.2650 0.9018 3.6494 35 1 1.9683 1.3766 2.5266 36 1 4.5703 2.9041 2.9881 37 1 2.9040 5.7852 3.0058 38 1 2.7263 6.0220 4.7607 39 1 4.2719 5.4443 4.0925 40 1 2.1096 3.5494 1.3014 41 1 3.5075 4.6227 1.5512 42 1 4.9948 2.9247 0.5265 43 1 3.6980 3.3991 -0.5968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169884320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:41 Heat of formation + Delta-G solvation = -98.888694 kcal Electronic energy + Delta-G solvation = -23000.399144 eV Core-core repulsion = 19785.710477 eV Total energy + Delta-G solvation = -3214.688666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44520 -37.91218 -36.98703 -36.85640 -34.54329 -32.33442 -31.95134 -30.08158 -30.02030 -27.76697 -25.11427 -23.79133 -23.15306 -21.93127 -19.84949 -19.61915 -18.32266 -17.79004 -17.06815 -16.86594 -16.74291 -16.30010 -16.16075 -15.65342 -14.87153 -14.55302 -14.52074 -14.24714 -13.87467 -13.78430 -13.52001 -13.30737 -13.21109 -13.04062 -12.96009 -12.91348 -12.88863 -12.62844 -12.48764 -12.24661 -12.09329 -11.90901 -11.86320 -11.75548 -11.74898 -11.51174 -11.31781 -10.71712 -10.62385 -10.49133 -8.82991 -8.07503 -6.26729 -0.80986 1.36625 1.37630 1.45015 1.95155 2.39213 2.80982 3.15286 3.18193 3.46247 3.63177 3.75737 4.12447 4.17154 4.21794 4.33866 4.39789 4.42387 4.49156 4.58937 4.67729 4.71982 4.76418 4.87043 4.94406 4.97679 5.08923 5.10512 5.28537 5.31288 5.31993 5.39433 5.41277 5.43111 5.50540 5.54768 5.60652 5.87786 6.17712 6.41378 6.73926 6.96957 7.43591 8.91935 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.004838 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.324390 B = 5785.923700 C = 6071.254942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 N -0.526 5.526 4 C 0.198 3.802 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.015 3.985 8 N -0.925 5.925 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.082 3.918 14 C -0.100 4.100 15 C -0.102 4.102 16 C -0.544 4.544 17 S 2.414 3.586 18 C -0.642 4.642 19 O -0.985 6.985 20 O -0.984 6.984 21 C -0.101 4.101 22 C -0.099 4.099 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.015 0.985 27 H 0.083 0.917 28 H 0.000 1.000 29 H 0.019 0.981 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 1.924 14.431 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 N -0.250 5.250 4 C 0.071 3.929 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.565 5.565 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.195 1.195 13 C -0.026 4.026 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.655 4.655 17 S 2.603 3.397 18 C -0.794 4.794 19 O -0.982 6.982 20 O -0.981 6.981 21 C -0.139 4.139 22 C -0.138 4.138 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.033 0.967 27 H 0.101 0.899 28 H 0.018 0.982 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.185 0.815 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.177 0.823 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.482 1.934 15.362 16.785 hybrid contribution 0.883 -0.481 -2.634 2.819 sum 7.366 1.453 12.728 14.777 Atomic orbital electron populations 1.21672 0.95665 1.01115 1.01027 1.22048 0.95769 0.90494 0.99600 1.62543 1.13343 1.14794 1.34324 1.19451 0.94406 0.94082 0.84944 1.21932 1.31602 1.10559 0.94359 0.93041 1.25682 0.96034 0.95483 1.01216 1.70050 1.42072 1.22153 1.22269 0.85785 0.79305 0.78618 0.78996 1.20097 1.21028 1.19537 1.21515 0.88622 0.96660 0.95825 1.21578 1.00770 0.98674 0.92801 1.21240 1.01691 0.91461 0.99605 1.29989 1.15067 1.07163 1.13277 1.07780 0.75711 0.80051 0.76182 1.30131 1.15068 1.20830 1.13381 1.93542 1.31547 1.87048 1.86059 1.93517 1.82497 1.79632 1.42451 1.21365 1.02190 0.98953 0.91420 1.21408 0.99831 0.94727 0.97812 0.94986 0.91477 0.92451 0.96659 0.89859 0.98190 0.96272 0.92881 0.96015 0.89600 0.91406 0.89989 0.91157 0.81515 0.83616 0.84297 0.82273 0.91469 0.88255 0.89854 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.89 71.98 0.71 -4.25 16 2 C 0.05 1.84 5.26 86.30 0.45 2.29 16 3 N -0.53 -21.05 3.05 -875.51 -2.67 -23.72 16 4 C 0.20 9.93 4.57 85.56 0.39 10.32 16 5 C -0.55 -29.21 7.49 25.60 0.19 -29.01 16 6 H 0.05 2.74 5.87 -2.91 -0.02 2.72 16 7 C 0.01 0.82 5.46 84.65 0.46 1.29 16 8 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 9 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.08 2.84 1.98 44.92 0.09 2.93 16 14 C -0.10 -2.59 4.99 30.60 0.15 -2.44 16 15 C -0.10 -2.52 5.04 30.59 0.15 -2.37 16 16 C -0.54 -11.05 2.62 30.59 0.08 -10.97 16 17 S 2.41 51.56 4.90 -56.49 -0.28 51.28 16 18 C -0.64 -7.37 10.01 113.37 1.14 -6.24 16 19 O -0.98 -30.89 18.06 -127.37 -2.30 -33.19 16 20 O -0.98 -26.47 18.10 -127.37 -2.30 -28.78 16 21 C -0.10 -2.52 4.75 30.60 0.15 -2.38 16 22 C -0.10 -3.04 5.08 30.59 0.16 -2.88 16 23 H 0.03 1.33 6.43 -2.39 -0.02 1.32 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.02 0.64 6.42 -2.39 -0.02 0.63 16 27 H 0.08 2.64 5.68 -2.38 -0.01 2.62 16 28 H 0.00 0.00 6.31 -2.39 -0.02 -0.01 16 29 H 0.02 1.03 6.27 -2.38 -0.01 1.01 16 30 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.02 0.88 6.60 -2.38 -0.02 0.86 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.74 6.12 -2.39 -0.01 1.73 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.11 7.60 -2.39 -0.02 2.09 16 36 H 0.17 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.15 1.43 6.78 -2.39 -0.02 1.42 16 38 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 2.13 7.60 -2.39 -0.02 2.11 16 41 H 0.10 1.69 6.39 -2.39 -0.02 1.67 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.05 1.75 6.39 -2.39 -0.02 1.74 16 Total: -1.00 -74.00 333.31 -0.12 -74.13 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.99 Total: 12.38 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 4.12 Total: -43.71 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -2.38 Total: -77.48 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -4.61 Total: -61.97 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.28 Total: 51.28 kcal Total: -74.00 -0.12 -74.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169884320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.761 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds