Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38665 * 119.89661 * 359.97438 * 3 2 1 5 5 C 1.38155 * 119.91652 * 179.97438 * 4 3 2 6 6 C 1.38041 * 120.02015 * 0.11818 * 5 4 3 7 7 C 1.39159 * 120.32967 * 359.90725 * 6 5 4 8 8 C 1.38318 * 119.72895 * 359.67603 * 7 6 5 9 9 C 1.50757 * 121.42377 * 180.24521 * 8 7 6 10 10 C 1.53079 * 109.73741 * 342.45785 * 9 8 7 11 11 H 1.08999 * 109.73009 * 288.32800 * 10 9 8 12 12 N 1.46892 * 109.70326 * 167.73895 * 10 9 8 13 13 C 1.47488 * 110.99865 * 80.19320 * 12 10 9 14 14 C 1.53517 * 87.92830 * 138.70647 * 13 12 10 15 15 C 1.50697 * 114.34090 * 220.31667 * 14 13 12 16 16 H 1.08000 * 120.00040 * 93.92682 * 15 14 13 17 17 C 1.37878 * 120.00001 * 273.92450 * 15 14 13 18 18 N 1.31524 * 119.99930 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00143 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47046 * 89.99732 * 19 17 15 21 21 H 1.48497 * 109.46829 * 210.00037 * 19 17 15 22 22 H 1.48503 * 109.46758 * 329.99910 * 19 17 15 23 23 C 1.47473 * 111.00145 * 176.16614 * 12 10 9 24 24 C 1.53405 * 108.28691 * 48.03911 * 10 9 8 25 25 O 1.35858 * 118.47868 * 179.72861 * 7 6 5 26 26 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.04323 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.99257 * 180.09563 * 5 4 3 31 31 H 1.08003 * 119.83747 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.55806 * 222.28889 * 9 8 7 33 33 H 1.08993 * 109.25944 * 102.44780 * 9 8 7 34 34 H 1.08995 * 113.47258 * 253.47001 * 13 12 10 35 35 H 1.08994 * 113.47349 * 23.94245 * 13 12 10 36 36 H 1.08998 * 114.16966 * 87.62714 * 14 13 12 37 37 H 0.96989 * 119.99557 * 180.02562 * 18 17 15 38 38 H 1.08999 * 113.47609 * 336.06317 * 23 12 10 39 39 H 1.09005 * 113.47845 * 106.53087 * 23 12 10 40 40 H 1.09003 * 109.68069 * 175.61199 * 24 10 9 41 41 H 1.08999 * 109.71396 * 55.07879 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2887 2.3724 -0.0005 5 6 1.9155 3.6036 0.0000 6 6 3.2940 3.6768 -0.0014 7 6 4.0594 2.5146 -0.0014 8 6 3.4336 1.2811 0.0068 9 6 4.2252 -0.0018 0.0126 10 6 5.6650 0.2771 -0.4260 11 1 5.6885 0.4976 -1.4932 12 7 6.5046 -0.8947 -0.1438 13 6 6.3414 -1.9252 -1.1864 14 6 7.8592 -2.1472 -1.1260 15 6 8.5101 -2.3571 -2.4688 16 1 8.9380 -1.5187 -2.9984 17 6 8.5595 -3.6193 -3.0213 18 7 9.1272 -3.8024 -4.1935 19 14 7.8189 -5.0693 -2.1056 20 1 6.3943 -5.2250 -2.4946 21 1 8.5646 -6.3061 -2.4513 22 1 7.9092 -4.8293 -0.6429 23 6 7.8790 -0.6917 -0.6384 24 6 6.1829 1.4864 0.3632 25 8 5.4130 2.6304 -0.0085 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2103 2.3148 -0.0005 30 1 1.3269 4.5091 0.0011 31 1 3.7809 4.6408 -0.0014 32 1 3.7689 -0.7153 -0.6736 33 1 4.2271 -0.4185 1.0197 34 1 5.7629 -2.7882 -0.8570 35 1 5.9985 -1.5264 -2.1410 36 1 8.1746 -2.8733 -0.3767 37 1 9.1616 -4.6903 -4.5822 38 1 7.9464 0.0362 -1.4470 39 1 8.6036 -0.5094 0.1552 40 1 7.2328 1.6576 0.1255 41 1 6.0739 1.3020 1.4320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173153407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -10.398274 kcal Electronic energy + Delta-G solvation = -23089.493173 eV Core-core repulsion = 19743.197788 eV Total energy + Delta-G solvation = -3346.295385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04400 -39.58130 -38.73124 -36.55102 -33.99054 -32.45453 -30.91147 -29.73939 -27.79947 -27.34476 -26.20802 -24.54788 -24.18292 -22.31885 -21.91165 -19.68622 -18.79229 -18.47618 -17.24842 -16.91671 -16.38590 -15.98169 -15.84702 -15.25368 -15.08777 -14.73154 -14.35316 -13.99302 -13.61946 -13.35712 -13.29738 -13.01715 -12.83458 -12.50794 -12.34423 -11.90875 -11.81774 -11.60268 -11.49063 -11.08338 -11.00403 -10.87440 -10.64223 -10.23923 -9.96147 -9.73834 -9.48511 -9.17619 -8.59772 -8.38200 -8.26345 -8.15284 -6.12381 -4.13550 1.23324 1.34109 3.02962 3.28929 3.32350 3.36711 3.40279 3.63455 4.39631 4.46734 4.61543 4.67042 4.81609 4.93101 4.94204 5.00117 5.06501 5.14637 5.25149 5.29632 5.36862 5.43354 5.52583 5.67700 5.70200 5.77407 5.99119 6.07839 6.16417 6.21781 6.27506 6.30020 6.32281 6.38758 6.44883 6.53932 6.66103 6.85859 7.17549 7.34222 7.41650 7.65146 7.76904 8.46241 8.90250 9.49860 11.00062 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.004158 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.808796 B = 6733.072001 C = 7607.830286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.161 3.839 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.187 4.187 7 C 0.169 3.831 8 C -0.184 4.184 9 C -0.055 4.055 10 C 0.014 3.986 11 H 0.061 0.939 12 N -0.473 5.473 13 C -0.008 4.008 14 C -0.004 4.004 15 C -0.510 4.510 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.899 5.899 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.005 3.995 24 C 0.069 3.931 25 O -0.311 6.311 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.265 0.735 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.440 11.971 10.122 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.115 3.885 4 C -0.263 4.263 5 C -0.072 4.072 6 C -0.205 4.205 7 C 0.124 3.876 8 C -0.187 4.187 9 C -0.093 4.093 10 C -0.096 4.096 11 H 0.079 0.921 12 N -0.197 5.197 13 C -0.137 4.137 14 C -0.023 4.023 15 C -0.548 4.548 16 H 0.093 0.907 17 C -0.128 4.128 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.124 4.124 24 C -0.006 4.006 25 O -0.223 6.223 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.340 11.679 10.644 22.730 hybrid contribution -0.734 -0.609 -0.554 1.103 sum -17.073 11.069 10.090 22.712 Atomic orbital electron populations 1.23064 0.78417 1.03953 1.01264 1.86101 1.21254 1.26790 1.88213 1.18593 0.90966 0.84285 0.94678 1.21052 0.99851 0.92215 1.13223 1.20619 0.93445 0.97051 0.96036 1.20484 0.93180 0.96900 1.09984 1.18457 0.82949 0.92236 0.94005 1.19162 0.91529 0.95214 1.12748 1.20200 0.92426 0.93451 1.03176 1.22817 0.94697 0.93208 0.98830 0.92063 1.68918 1.03346 1.05825 1.41608 1.24316 1.02116 0.94621 0.92640 1.20660 0.91160 0.92731 0.97786 1.20913 1.37328 0.95393 1.01178 0.90733 1.25009 0.94284 0.98817 0.94671 1.69911 1.43809 1.22965 1.16908 0.86825 0.79543 0.82034 0.81218 1.20149 1.21430 1.18505 1.23840 0.90099 1.00582 0.97857 1.23035 0.94962 0.83408 0.99224 1.86024 1.14296 1.38638 1.83385 0.92673 0.92632 0.88223 0.85471 0.85294 0.85164 0.89982 0.89883 0.92007 0.91550 0.91804 0.92552 0.91847 0.91245 0.87164 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.98 9.64 -19.41 -0.19 -4.17 16 3 C 0.16 2.15 6.65 -39.17 -0.26 1.89 16 4 C -0.24 -2.69 9.03 -39.45 -0.36 -3.04 16 5 C -0.05 -0.56 10.03 -39.68 -0.40 -0.95 16 6 C -0.19 -2.28 9.93 -39.31 -0.39 -2.67 16 7 C 0.17 2.47 6.47 -39.21 -0.25 2.22 16 8 C -0.18 -2.75 5.76 -104.31 -0.60 -3.35 16 9 C -0.06 -0.87 4.86 -27.81 -0.14 -1.01 16 10 C 0.01 0.23 1.76 -67.47 -0.12 0.12 16 11 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 12 N -0.47 -8.78 6.14 -236.28 -1.45 -10.23 16 13 C -0.01 -0.17 6.60 -7.53 -0.05 -0.22 16 14 C 0.00 -0.09 2.98 -91.24 -0.27 -0.36 16 15 C -0.51 -13.97 9.38 -34.44 -0.32 -14.30 16 16 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.88 21.21 27.41 -169.99 -4.66 16.55 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.05 6.22 56.52 0.35 -5.70 16 23 C 0.00 0.09 6.10 -7.54 -0.05 0.05 16 24 C 0.07 1.01 6.36 37.37 0.24 1.24 16 25 O -0.31 -4.71 10.27 -19.29 -0.20 -4.90 16 26 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 27 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.13 1.06 6.28 -52.49 -0.33 0.73 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.08 1.36 7.83 -51.93 -0.41 0.95 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.44 7.58 -51.93 -0.39 1.05 16 36 H 0.06 1.50 6.50 -51.93 -0.34 1.17 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.06 1.25 7.82 -51.93 -0.41 0.84 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.11 1.52 7.27 -51.93 -0.38 1.14 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -30.51 328.40 -8.85 -39.36 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.01 Total: 1.86 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.07 Total: -17.16 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.68 Total: -36.50 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.39 Total: -9.07 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.66 Total: 16.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.51 -8.85 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173153407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.963 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds