Wall clock time and date at job start Tue Mar 31 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38665 * 119.89661 * 359.97438 * 3 2 1 5 5 C 1.38155 * 119.91652 * 179.97438 * 4 3 2 6 6 C 1.38041 * 120.02015 * 0.11818 * 5 4 3 7 7 C 1.39159 * 120.32967 * 359.90725 * 6 5 4 8 8 C 1.38318 * 119.72895 * 359.67603 * 7 6 5 9 9 C 1.50757 * 121.42377 * 180.24521 * 8 7 6 10 10 C 1.53079 * 109.73741 * 342.45785 * 9 8 7 11 11 H 1.08999 * 109.73009 * 288.32800 * 10 9 8 12 12 N 1.46892 * 109.70326 * 167.73895 * 10 9 8 13 13 C 1.47488 * 110.99865 * 80.19320 * 12 10 9 14 14 C 1.53517 * 87.92830 * 138.70647 * 13 12 10 15 15 C 1.50697 * 114.34090 * 220.31667 * 14 13 12 16 16 H 1.08000 * 120.00040 * 93.92682 * 15 14 13 17 17 C 1.37878 * 120.00001 * 273.92450 * 15 14 13 18 18 N 1.31524 * 119.99930 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00143 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47046 * 89.99732 * 19 17 15 21 21 H 1.48497 * 109.46829 * 210.00037 * 19 17 15 22 22 H 1.48503 * 109.46758 * 329.99910 * 19 17 15 23 23 C 1.47473 * 111.00145 * 176.16614 * 12 10 9 24 24 C 1.53405 * 108.28691 * 48.03911 * 10 9 8 25 25 O 1.35858 * 118.47868 * 179.72861 * 7 6 5 26 26 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 27 27 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.04323 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.99257 * 180.09563 * 5 4 3 31 31 H 1.08003 * 119.83747 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.55806 * 222.28889 * 9 8 7 33 33 H 1.08993 * 109.25944 * 102.44780 * 9 8 7 34 34 H 1.08995 * 113.47258 * 253.47001 * 13 12 10 35 35 H 1.08994 * 113.47349 * 23.94245 * 13 12 10 36 36 H 1.08998 * 114.16966 * 87.62714 * 14 13 12 37 37 H 0.96989 * 119.99557 * 180.02562 * 18 17 15 38 38 H 1.08999 * 113.47609 * 336.06317 * 23 12 10 39 39 H 1.09005 * 113.47845 * 106.53087 * 23 12 10 40 40 H 1.09003 * 109.68069 * 175.61199 * 24 10 9 41 41 H 1.08999 * 109.71396 * 55.07879 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2887 2.3724 -0.0005 5 6 1.9155 3.6036 0.0000 6 6 3.2940 3.6768 -0.0014 7 6 4.0594 2.5146 -0.0014 8 6 3.4336 1.2811 0.0068 9 6 4.2252 -0.0018 0.0126 10 6 5.6650 0.2771 -0.4260 11 1 5.6885 0.4976 -1.4932 12 7 6.5046 -0.8947 -0.1438 13 6 6.3414 -1.9252 -1.1864 14 6 7.8592 -2.1472 -1.1260 15 6 8.5101 -2.3571 -2.4688 16 1 8.9380 -1.5187 -2.9984 17 6 8.5595 -3.6193 -3.0213 18 7 9.1272 -3.8024 -4.1935 19 14 7.8189 -5.0693 -2.1056 20 1 6.3943 -5.2250 -2.4946 21 1 8.5646 -6.3061 -2.4513 22 1 7.9092 -4.8293 -0.6429 23 6 7.8790 -0.6917 -0.6384 24 6 6.1829 1.4864 0.3632 25 8 5.4130 2.6304 -0.0085 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2103 2.3148 -0.0005 30 1 1.3269 4.5091 0.0011 31 1 3.7809 4.6408 -0.0014 32 1 3.7689 -0.7153 -0.6736 33 1 4.2271 -0.4185 1.0197 34 1 5.7629 -2.7882 -0.8570 35 1 5.9985 -1.5264 -2.1410 36 1 8.1746 -2.8733 -0.3767 37 1 9.1616 -4.6903 -4.5822 38 1 7.9464 0.0362 -1.4470 39 1 8.6036 -0.5094 0.1552 40 1 7.2328 1.6576 0.1255 41 1 6.0739 1.3020 1.4320 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173153407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:35 Heat of formation + Delta-G solvation = -31.454100 kcal Electronic energy + Delta-G solvation = -23090.406222 eV Core-core repulsion = 19743.197788 eV Total energy + Delta-G solvation = -3347.208434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.14951 -40.86699 -39.91959 -37.49119 -35.40947 -34.38434 -32.12851 -30.72921 -29.34404 -28.21358 -27.51109 -26.03894 -25.76969 -23.50361 -22.99105 -20.94491 -20.56391 -19.44531 -19.05195 -18.20695 -17.40372 -17.04243 -16.72706 -16.66054 -16.35872 -16.00858 -15.78882 -15.35186 -15.00102 -14.89924 -14.41205 -14.31631 -14.07830 -13.98758 -13.38609 -13.26360 -13.19687 -12.88773 -12.69645 -12.62975 -12.22428 -12.03427 -11.89079 -11.74352 -11.53278 -11.41901 -11.28858 -11.05431 -10.68604 -9.90379 -9.39808 -9.07918 -8.30755 -6.36600 0.29250 0.40517 1.37493 1.38783 1.49951 2.11780 2.35600 2.37172 2.68537 3.00718 3.07750 3.37709 3.64625 3.85327 3.92109 4.03582 4.04022 4.16047 4.24368 4.26825 4.38861 4.39782 4.44663 4.48695 4.48918 4.57949 4.63253 4.72350 4.73987 4.82874 4.89363 4.94936 5.01092 5.23451 5.26718 5.28019 5.43571 5.46244 5.60983 5.63584 6.08650 6.27329 6.29964 6.45190 6.69385 7.30390 8.85368 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.004158 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.808796 B = 6733.072001 C = 7607.830286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.148 3.852 4 C -0.239 4.239 5 C -0.043 4.043 6 C -0.194 4.194 7 C 0.145 3.855 8 C -0.212 4.212 9 C -0.045 4.045 10 C 0.017 3.983 11 H 0.040 0.960 12 N -0.460 5.460 13 C 0.000 4.000 14 C -0.017 4.017 15 C -0.514 4.514 16 H 0.034 0.966 17 C 0.018 3.982 18 N -0.948 5.948 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.241 1.241 23 C 0.015 3.985 24 C 0.075 3.925 25 O -0.320 6.320 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.267 0.733 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.979 12.895 12.161 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.102 3.898 4 C -0.258 4.258 5 C -0.061 4.061 6 C -0.212 4.212 7 C 0.099 3.901 8 C -0.214 4.214 9 C -0.082 4.082 10 C -0.093 4.093 11 H 0.058 0.942 12 N -0.183 5.183 13 C -0.130 4.130 14 C -0.036 4.036 15 C -0.552 4.552 16 H 0.053 0.947 17 C -0.180 4.180 18 N -0.588 5.588 19 Si 0.765 3.235 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.164 1.164 23 C -0.114 4.114 24 C 0.000 4.000 25 O -0.233 6.233 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.175 0.825 30 H 0.186 0.814 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.896 12.623 12.703 26.034 hybrid contribution -0.028 -0.784 -1.234 1.462 sum -18.924 11.839 11.469 25.096 Atomic orbital electron populations 1.23376 0.76110 1.05469 1.02618 1.86068 1.23739 1.26946 1.88175 1.18785 0.90716 0.85418 0.94832 1.21442 1.01316 0.91480 1.11528 1.21099 0.92916 0.98357 0.93690 1.20810 0.94078 0.96703 1.09643 1.18786 0.82697 0.93103 0.95481 1.19197 0.92539 0.94695 1.14959 1.20023 0.91726 0.94107 1.02373 1.22781 0.95231 0.93211 0.98060 0.94177 1.68880 1.03053 1.06182 1.40181 1.24080 1.00324 0.95705 0.92854 1.20637 0.92250 0.95178 0.95523 1.21139 1.36953 0.94269 1.02841 0.94735 1.25881 0.94804 1.01938 0.95404 1.70055 1.45979 1.23817 1.18931 0.85797 0.78800 0.78089 0.80853 1.19327 1.21198 1.16439 1.23719 0.91317 0.98042 0.98308 1.22979 0.95251 0.82480 0.99307 1.86000 1.15017 1.38417 1.83880 0.90988 0.91443 0.86851 0.82468 0.81444 0.83698 0.91555 0.90181 0.91193 0.93084 0.91452 0.92417 0.92615 0.88849 0.86471 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.18 9.64 -92.39 -0.89 -9.07 16 3 C 0.15 3.76 6.65 22.54 0.15 3.91 16 4 C -0.24 -4.49 9.03 22.35 0.20 -4.29 16 5 C -0.04 -0.74 10.03 22.20 0.22 -0.52 16 6 C -0.19 -4.29 9.93 22.44 0.22 -4.07 16 7 C 0.14 4.09 6.47 22.51 0.15 4.24 16 8 C -0.21 -6.22 5.76 -19.66 -0.11 -6.33 16 9 C -0.04 -1.42 4.86 29.89 0.15 -1.28 16 10 C 0.02 0.56 1.76 45.08 0.08 0.64 16 11 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 12 N -0.46 -16.78 6.14 -901.46 -5.54 -22.31 16 13 C 0.00 -0.01 6.60 83.58 0.55 0.54 16 14 C -0.02 -0.76 2.98 -11.19 -0.03 -0.80 16 15 C -0.51 -29.00 9.38 25.60 0.24 -28.76 16 16 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 17 C 0.02 1.01 5.47 84.65 0.46 1.47 16 18 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 19 Si 0.94 43.76 27.41 68.60 1.88 45.64 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.24 -10.37 6.22 99.48 0.62 -9.75 16 23 C 0.01 0.57 6.10 83.58 0.51 1.08 16 24 C 0.07 2.15 6.36 72.12 0.46 2.61 16 25 O -0.32 -9.54 10.27 -91.95 -0.94 -10.48 16 26 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.16 1.93 6.28 -2.91 -0.02 1.91 16 30 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.07 2.25 7.83 -2.39 -0.02 2.23 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 36 H 0.07 3.07 6.50 -2.39 -0.02 3.06 16 37 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16 38 H 0.06 2.24 7.82 -2.39 -0.02 2.22 16 39 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 40 H 0.12 3.14 7.27 -2.39 -0.02 3.12 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.06 328.40 0.10 -67.96 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.93 Total: 17.04 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.36 Total: -30.19 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -5.24 Total: -80.91 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.83 Total: -19.55 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -68.06 0.10 -67.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173153407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.506 kcal (2) G-P(sol) polarization free energy of solvation -68.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds