Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21276 * 119.99876 * 2 1 4 4 N 1.34770 * 119.99710 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.63216 * 359.97438 * 4 2 1 6 6 C 1.53191 * 108.77521 * 233.62974 * 5 4 2 7 7 C 1.53049 * 109.31251 * 305.36596 * 6 5 4 8 8 C 1.53035 * 109.53726 * 61.36515 * 7 6 5 9 9 H 1.08996 * 109.52497 * 58.60399 * 8 7 6 10 10 O 1.42903 * 109.49722 * 178.68558 * 8 7 6 11 11 C 1.35672 * 116.99982 * 205.33780 * 10 8 7 12 12 C 1.39311 * 119.81852 * 354.65883 * 11 10 8 13 13 C 1.36432 * 120.18752 * 179.97438 * 12 11 10 14 14 C 1.40835 * 119.81268 * 0.02562 * 13 12 11 15 15 C 1.41210 * 120.18589 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99594 * 24.71894 * 15 14 13 17 17 C 1.39885 * 120.00605 * 204.71962 * 15 14 13 18 18 N 1.30883 * 119.99925 * 17.87049 * 17 15 14 19 19 Si 1.86806 * 120.00201 * 197.59713 * 17 15 14 20 20 H 1.48497 * 109.46968 * 84.98703 * 19 17 15 21 21 H 1.48499 * 109.46933 * 204.98744 * 19 17 15 22 22 H 1.48498 * 109.47070 * 324.98893 * 19 17 15 23 23 C 1.40841 * 119.63845 * 0.27948 * 14 13 12 24 24 C 1.36435 * 119.80790 * 359.41627 * 23 14 13 25 25 C 1.46926 * 120.63238 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47088 * 270.00365 * 1 2 3 27 27 H 1.09005 * 109.46997 * 30.00187 * 1 2 3 28 28 H 1.08994 * 109.47210 * 149.99637 * 1 2 3 29 29 H 1.08991 * 109.58663 * 353.41932 * 5 4 2 30 30 H 1.09001 * 109.58611 * 113.69987 * 5 4 2 31 31 H 1.09000 * 109.49546 * 65.31392 * 6 5 4 32 32 H 1.08999 * 109.49826 * 185.38267 * 6 5 4 33 33 H 1.08997 * 109.45931 * 301.34262 * 7 6 5 34 34 H 1.09001 * 109.45661 * 181.39020 * 7 6 5 35 35 H 1.08004 * 119.90715 * 359.97299 * 12 11 10 36 36 H 1.08000 * 120.10056 * 180.02562 * 13 12 11 37 37 H 0.96995 * 120.00118 * 179.72253 * 18 17 15 38 38 H 1.07997 * 120.09381 * 179.72010 * 23 14 13 39 39 H 1.08007 * 119.90658 * 180.27078 * 24 23 14 40 40 H 1.09009 * 109.58360 * 6.58277 * 25 4 2 41 41 H 1.08998 * 109.70422 * 246.22929 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4602 -2.4476 0.0017 6 6 1.9684 -3.2984 1.1699 7 6 3.4898 -3.4334 1.0735 8 6 4.1336 -2.0483 1.1687 9 1 3.8502 -1.5789 2.1107 10 8 5.5555 -2.1782 1.1093 11 6 6.2886 -1.1936 1.6871 12 6 5.6514 -0.0668 2.2020 13 6 6.3812 0.9276 2.7851 14 6 7.7825 0.8129 2.8652 15 6 8.5455 1.8371 3.4675 16 1 8.0918 2.4892 4.1993 17 6 9.8889 2.0073 3.1165 18 7 10.3486 1.4781 2.0112 19 14 11.0250 2.9963 4.2214 20 1 11.5631 2.1180 5.2910 21 1 12.1477 3.5408 3.4164 22 1 10.2671 4.1162 4.8351 23 6 8.4194 -0.3266 2.3364 24 6 7.6744 -1.3148 1.7621 25 6 3.6500 -1.1835 0.0011 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 0.3921 -2.2657 0.1196 30 1 1.6404 -2.9691 -0.9384 31 1 1.7048 -2.8173 2.1118 32 1 1.5114 -4.2870 1.1258 33 1 3.7540 -3.8920 0.1206 34 1 3.8513 -4.0589 1.8897 35 1 4.5767 0.0199 2.1394 36 1 5.8857 1.8003 3.1842 37 1 11.2791 1.5995 1.7658 38 1 9.4940 -0.4201 2.3898 39 1 8.1608 -2.1913 1.3600 40 1 4.0266 -0.1673 0.1188 41 1 4.0133 -1.6014 -0.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225263397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = -55.631319 kcal Electronic energy + Delta-G solvation = -22910.091569 eV Core-core repulsion = 19561.834732 eV Total energy + Delta-G solvation = -3348.256837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35250 -38.84313 -37.23160 -36.03090 -33.37942 -32.65416 -31.25883 -29.79271 -29.14538 -28.73524 -25.30420 -24.91887 -23.15303 -21.78680 -20.62259 -20.12443 -19.07092 -17.37719 -17.27279 -16.87259 -16.09731 -15.59046 -15.19113 -14.87752 -14.69056 -14.01409 -13.90071 -13.54846 -13.41184 -13.28581 -12.94800 -12.73345 -12.53632 -12.22192 -12.13726 -11.97325 -11.76052 -11.35640 -11.20380 -11.11435 -11.09551 -10.84070 -10.64227 -10.37624 -9.99210 -9.84309 -9.77149 -9.28050 -9.01711 -8.66917 -7.59203 -6.99133 -6.68568 -4.21776 2.58072 2.80811 2.87234 3.00635 3.11092 3.14489 3.24393 3.97939 4.01061 4.43836 4.63972 4.64935 4.69518 4.87147 4.99015 5.03563 5.13161 5.23286 5.28403 5.42435 5.58100 5.65634 5.67281 5.71088 5.83213 5.92844 6.10466 6.12701 6.25154 6.29910 6.36151 6.78268 7.03226 7.16452 7.23620 7.33099 7.50752 7.60022 7.85190 8.04521 8.13404 8.24946 8.48028 8.68762 8.93986 9.02638 10.25939 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026178 B = 0.003674 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.325552 B = 7619.210784 C = 8331.435095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.507 3.493 3 O -0.538 6.538 4 N -0.611 5.611 5 C 0.102 3.898 6 C -0.131 4.131 7 C -0.116 4.116 8 C 0.082 3.918 9 H 0.070 0.930 10 O -0.317 6.317 11 C -0.014 4.014 12 C -0.163 4.163 13 C -0.195 4.195 14 C 0.089 3.911 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.136 4.136 24 C -0.118 4.118 25 C 0.086 3.914 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.280 0.720 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 -9.416 -3.232 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.415 6.415 4 N -0.347 5.347 5 C -0.021 4.021 6 C -0.169 4.169 7 C -0.154 4.154 8 C 0.023 3.977 9 H 0.087 0.913 10 O -0.232 6.232 11 C -0.057 4.057 12 C -0.182 4.182 13 C -0.215 4.215 14 C 0.087 3.913 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.155 4.155 24 C -0.137 4.137 25 C -0.037 4.037 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.592 -9.006 -3.476 18.339 hybrid contribution 0.418 0.578 0.451 0.844 sum -15.175 -8.429 -3.025 17.620 Atomic orbital electron populations 1.21963 0.91931 1.04689 1.04723 1.20840 0.90577 0.83164 0.75842 1.90773 1.70543 1.30911 1.49247 1.48133 1.06857 1.05991 1.73692 1.21867 0.96832 0.84253 0.99128 1.21902 0.95727 1.00419 0.98901 1.21558 0.93996 0.96275 1.03525 1.22306 0.81547 0.95726 0.98119 0.91252 1.85879 1.15646 1.45825 1.75892 1.18583 0.90780 0.90245 1.06095 1.20453 0.97691 0.95543 1.04485 1.20581 0.94549 0.98789 1.07541 1.17603 0.90898 0.92129 0.90675 1.19473 0.94564 1.13865 1.21441 0.90555 1.25873 0.98818 0.95171 0.94293 1.69835 1.16411 1.37222 1.19008 0.86336 0.79470 0.80274 0.80666 1.19276 1.20410 1.18763 1.20965 0.99693 0.92676 1.02182 1.19819 0.90132 0.99816 1.03935 1.22212 0.78670 1.03526 0.99245 0.88871 0.88954 0.90010 0.89258 0.91059 0.91179 0.89943 0.90925 0.90693 0.88665 0.88770 0.90942 0.85664 0.88533 0.87978 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.46 36.01 0.34 -1.07 16 2 C 0.51 6.96 7.81 -10.99 -0.09 6.87 16 3 O -0.54 -10.28 16.51 5.56 0.09 -10.19 16 4 N -0.61 -7.68 2.97 -172.80 -0.51 -8.20 16 5 C 0.10 0.82 6.22 -3.71 -0.02 0.79 16 6 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 7 C -0.12 -1.35 5.54 -26.69 -0.15 -1.50 16 8 C 0.08 1.31 2.26 -26.64 -0.06 1.25 16 9 H 0.07 1.20 6.25 -51.93 -0.32 0.88 16 10 O -0.32 -6.45 9.79 -18.72 -0.18 -6.63 16 11 C -0.01 -0.33 6.63 -38.78 -0.26 -0.59 16 12 C -0.16 -3.88 8.25 -39.83 -0.33 -4.21 16 13 C -0.19 -5.04 9.74 -39.25 -0.38 -5.42 16 14 C 0.09 2.46 5.58 -106.80 -0.60 1.86 16 15 C -0.46 -12.66 9.04 -37.84 -0.34 -13.00 16 16 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 17 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 18 N -0.80 -21.13 10.95 55.54 0.61 -20.53 16 19 Si 0.91 19.14 29.59 -169.99 -5.03 14.11 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.14 -3.62 8.64 -39.25 -0.34 -3.96 16 24 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 16 25 C 0.09 1.37 5.73 -3.74 -0.02 1.35 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.43 6.19 -51.93 -0.32 0.11 16 29 H 0.09 0.47 5.52 -51.93 -0.29 0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.10 5.34 -52.48 -0.28 1.82 16 36 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 38 H 0.13 3.40 6.15 -52.49 -0.32 3.08 16 39 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.10 2.01 5.78 -51.92 -0.30 1.71 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -32.03 329.87 -8.56 -40.59 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.61 Total: 6.21 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.89 Total: -20.33 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 0.09 Total: -28.72 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.09 Total: -16.83 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.03 -8.56 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.044 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds