Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21276 * 119.99876 * 2 1 4 4 N 1.34770 * 119.99710 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.63216 * 359.97438 * 4 2 1 6 6 C 1.53191 * 108.77521 * 233.62974 * 5 4 2 7 7 C 1.53049 * 109.31251 * 305.36596 * 6 5 4 8 8 C 1.53035 * 109.53726 * 61.36515 * 7 6 5 9 9 H 1.08996 * 109.52497 * 58.60399 * 8 7 6 10 10 O 1.42903 * 109.49722 * 178.68558 * 8 7 6 11 11 C 1.35672 * 116.99982 * 205.33780 * 10 8 7 12 12 C 1.39311 * 119.81852 * 354.65883 * 11 10 8 13 13 C 1.36432 * 120.18752 * 179.97438 * 12 11 10 14 14 C 1.40835 * 119.81268 * 0.02562 * 13 12 11 15 15 C 1.41210 * 120.18589 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99594 * 24.71894 * 15 14 13 17 17 C 1.39885 * 120.00605 * 204.71962 * 15 14 13 18 18 N 1.30883 * 119.99925 * 17.87049 * 17 15 14 19 19 Si 1.86806 * 120.00201 * 197.59713 * 17 15 14 20 20 H 1.48497 * 109.46968 * 84.98703 * 19 17 15 21 21 H 1.48499 * 109.46933 * 204.98744 * 19 17 15 22 22 H 1.48498 * 109.47070 * 324.98893 * 19 17 15 23 23 C 1.40841 * 119.63845 * 0.27948 * 14 13 12 24 24 C 1.36435 * 119.80790 * 359.41627 * 23 14 13 25 25 C 1.46926 * 120.63238 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47088 * 270.00365 * 1 2 3 27 27 H 1.09005 * 109.46997 * 30.00187 * 1 2 3 28 28 H 1.08994 * 109.47210 * 149.99637 * 1 2 3 29 29 H 1.08991 * 109.58663 * 353.41932 * 5 4 2 30 30 H 1.09001 * 109.58611 * 113.69987 * 5 4 2 31 31 H 1.09000 * 109.49546 * 65.31392 * 6 5 4 32 32 H 1.08999 * 109.49826 * 185.38267 * 6 5 4 33 33 H 1.08997 * 109.45931 * 301.34262 * 7 6 5 34 34 H 1.09001 * 109.45661 * 181.39020 * 7 6 5 35 35 H 1.08004 * 119.90715 * 359.97299 * 12 11 10 36 36 H 1.08000 * 120.10056 * 180.02562 * 13 12 11 37 37 H 0.96995 * 120.00118 * 179.72253 * 18 17 15 38 38 H 1.07997 * 120.09381 * 179.72010 * 23 14 13 39 39 H 1.08007 * 119.90658 * 180.27078 * 24 23 14 40 40 H 1.09009 * 109.58360 * 6.58277 * 25 4 2 41 41 H 1.08998 * 109.70422 * 246.22929 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4602 -2.4476 0.0017 6 6 1.9684 -3.2984 1.1699 7 6 3.4898 -3.4334 1.0735 8 6 4.1336 -2.0483 1.1687 9 1 3.8502 -1.5789 2.1107 10 8 5.5555 -2.1782 1.1093 11 6 6.2886 -1.1936 1.6871 12 6 5.6514 -0.0668 2.2020 13 6 6.3812 0.9276 2.7851 14 6 7.7825 0.8129 2.8652 15 6 8.5455 1.8371 3.4675 16 1 8.0918 2.4892 4.1993 17 6 9.8889 2.0073 3.1165 18 7 10.3486 1.4781 2.0112 19 14 11.0250 2.9963 4.2214 20 1 11.5631 2.1180 5.2910 21 1 12.1477 3.5408 3.4164 22 1 10.2671 4.1162 4.8351 23 6 8.4194 -0.3266 2.3364 24 6 7.6744 -1.3148 1.7621 25 6 3.6500 -1.1835 0.0011 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 0.3921 -2.2657 0.1196 30 1 1.6404 -2.9691 -0.9384 31 1 1.7048 -2.8173 2.1118 32 1 1.5114 -4.2870 1.1258 33 1 3.7540 -3.8920 0.1206 34 1 3.8513 -4.0589 1.8897 35 1 4.5767 0.0199 2.1394 36 1 5.8857 1.8003 3.1842 37 1 11.2791 1.5995 1.7658 38 1 9.4940 -0.4201 2.3898 39 1 8.1608 -2.1913 1.3600 40 1 4.0266 -0.1673 0.1188 41 1 4.0133 -1.6014 -0.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225263397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -75.296488 kcal Electronic energy + Delta-G solvation = -22910.944315 eV Core-core repulsion = 19561.834732 eV Total energy + Delta-G solvation = -3349.109583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53815 -40.41111 -38.73533 -37.52173 -35.27343 -33.75895 -32.37866 -31.48409 -31.00234 -29.90661 -26.85786 -26.25259 -24.41227 -23.24560 -22.47709 -21.60113 -20.07203 -19.29588 -18.76274 -18.14038 -17.21226 -17.07321 -16.71468 -16.24964 -15.91615 -15.74689 -15.12852 -15.03963 -14.66949 -14.38237 -14.20083 -14.17668 -13.94966 -13.64955 -13.55872 -13.27665 -13.02360 -12.83679 -12.77293 -12.58976 -12.45261 -12.09104 -11.91531 -11.77126 -11.67900 -11.58066 -11.21183 -10.96782 -10.86119 -9.76778 -9.61033 -8.96643 -8.63050 -6.27591 0.90028 0.96627 1.37728 1.50624 1.51157 1.55365 1.86684 2.21281 2.60556 2.68116 3.54592 3.62883 3.74611 3.88695 3.90139 4.01184 4.08578 4.22155 4.27620 4.41752 4.45630 4.56492 4.60127 4.67246 4.77824 4.80389 4.88261 4.97995 5.00533 5.08102 5.16021 5.17560 5.23626 5.31785 5.38636 5.53568 5.62366 5.84294 6.00247 6.22217 6.38212 6.51716 6.73987 6.90551 7.03164 7.11881 8.33936 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026178 B = 0.003674 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.325552 B = 7619.210784 C = 8331.435095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.494 3.506 3 O -0.608 6.608 4 N -0.608 5.608 5 C 0.094 3.906 6 C -0.124 4.124 7 C -0.111 4.111 8 C 0.076 3.924 9 H 0.053 0.947 10 O -0.322 6.322 11 C -0.001 4.001 12 C -0.162 4.162 13 C -0.214 4.214 14 C 0.059 3.941 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.829 5.829 19 Si 0.986 3.014 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.151 4.151 24 C -0.127 4.127 25 C 0.091 3.909 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.289 0.711 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.054 0.946 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.363 -11.366 -3.402 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.286 3.714 3 O -0.489 6.489 4 N -0.342 5.342 5 C -0.026 4.026 6 C -0.162 4.162 7 C -0.149 4.149 8 C 0.019 3.981 9 H 0.071 0.929 10 O -0.237 6.237 11 C -0.045 4.045 12 C -0.180 4.180 13 C -0.233 4.233 14 C 0.057 3.943 15 C -0.531 4.531 16 H 0.092 0.908 17 C -0.179 4.179 18 N -0.456 5.456 19 Si 0.806 3.194 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.170 4.170 24 C -0.146 4.146 25 C -0.033 4.033 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.786 -11.020 -3.659 21.241 hybrid contribution 0.953 1.067 0.408 1.488 sum -16.833 -9.953 -3.252 19.824 Atomic orbital electron populations 1.21997 0.86900 1.06644 1.06486 1.22004 0.92919 0.82283 0.74221 1.90745 1.72298 1.33446 1.52454 1.48310 1.05337 1.07883 1.72682 1.22317 0.98399 0.81871 1.00029 1.21943 0.92803 1.02630 0.98801 1.21636 0.96286 0.92786 1.04159 1.22681 0.79177 0.98969 0.97316 0.92884 1.85872 1.18154 1.44485 1.75200 1.18622 0.90943 0.90424 1.04490 1.20577 0.98301 0.95300 1.03862 1.20737 0.94506 0.99598 1.08497 1.17931 0.91714 0.92934 0.91715 1.19718 0.96173 1.14706 1.22512 0.90839 1.26760 0.99690 0.96115 0.95385 1.69881 1.17296 1.38143 1.20254 0.85172 0.77132 0.78580 0.78517 1.18361 1.19116 1.18486 1.20930 0.99411 0.93287 1.03404 1.20035 0.90818 1.00047 1.03662 1.21882 0.81524 1.00641 0.99256 0.86946 0.88950 0.86142 0.85361 0.89159 0.91568 0.85942 0.89901 0.90601 0.87423 0.88717 0.90026 0.86688 0.86525 0.92689 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.46 71.24 0.67 -1.41 16 2 C 0.49 13.16 7.81 87.66 0.68 13.84 16 3 O -0.61 -24.28 16.51 -3.02 -0.05 -24.33 16 4 N -0.61 -14.29 2.97 -819.00 -2.43 -16.73 16 5 C 0.09 1.08 6.22 86.36 0.54 1.62 16 6 C -0.12 -1.50 6.08 30.67 0.19 -1.31 16 7 C -0.11 -2.29 5.54 30.62 0.17 -2.12 16 8 C 0.08 2.42 2.26 30.65 0.07 2.49 16 9 H 0.05 1.86 6.25 -2.39 -0.01 1.84 16 10 O -0.32 -13.12 9.79 -89.90 -0.88 -14.00 16 11 C 0.00 -0.05 6.63 22.79 0.15 0.10 16 12 C -0.16 -8.04 8.25 22.11 0.18 -7.86 16 13 C -0.21 -11.65 9.74 22.48 0.22 -11.43 16 14 C 0.06 3.42 5.58 -21.28 -0.12 3.31 16 15 C -0.50 -28.59 9.04 23.40 0.21 -28.38 16 16 H 0.07 4.06 7.90 -2.91 -0.02 4.04 16 17 C 0.03 1.82 5.14 85.23 0.44 2.26 16 18 N -0.83 -45.03 10.95 21.82 0.24 -44.79 16 19 Si 0.99 39.71 29.59 68.60 2.03 41.74 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 C -0.15 -8.39 8.64 22.49 0.19 -8.19 16 24 C -0.13 -6.41 9.92 22.11 0.22 -6.19 16 25 C 0.09 2.92 5.73 86.35 0.50 3.42 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.12 0.60 6.19 -2.39 -0.01 0.58 16 29 H 0.13 0.53 5.52 -2.39 -0.01 0.52 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 5.00 5.34 -2.91 -0.02 4.98 16 36 H 0.09 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 38 H 0.12 6.53 6.15 -2.91 -0.02 6.51 16 39 H 0.12 5.29 8.06 -2.91 -0.02 5.27 16 40 H 0.05 2.29 5.78 -2.38 -0.01 2.28 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -76.20 329.87 4.25 -71.95 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 1.04 Total: 26.02 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 4.31 Total: -39.86 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -2.20 Total: -61.52 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.93 Total: -38.33 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -76.20 4.25 -71.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.351 kcal (2) G-P(sol) polarization free energy of solvation -76.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds