Wall clock time and date at job start Tue Mar 31 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20761 * 120.00101 * 2 1 4 4 C 1.50701 * 119.99863 * 180.02562 * 2 1 3 5 5 C 1.50702 * 109.46753 * 179.97438 * 4 2 1 6 6 C 1.38265 * 119.94367 * 90.00062 * 5 4 2 7 7 C 1.38146 * 120.05846 * 180.02562 * 6 5 4 8 8 C 1.38733 * 119.94249 * 359.97438 * 7 6 5 9 9 O 1.35894 * 120.05663 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00258 * 354.66231 * 9 8 7 11 11 H 1.09002 * 110.63567 * 321.39829 * 10 9 8 12 12 C 1.55154 * 110.71974 * 198.06361 * 10 9 8 13 13 C 1.55132 * 101.48064 * 205.96626 * 12 10 9 14 14 N 1.47423 * 104.72276 * 37.29751 * 13 12 10 15 15 C 1.36939 * 125.64783 * 155.81320 * 14 13 12 16 16 H 1.08002 * 120.00152 * 194.59824 * 15 14 13 17 17 C 1.38816 * 120.00001 * 14.59802 * 15 14 13 18 18 N 1.31615 * 119.99860 * 205.61912 * 17 15 14 19 19 Si 1.86796 * 119.99882 * 25.61712 * 17 15 14 20 20 H 1.48506 * 109.47228 * 269.99992 * 19 17 15 21 21 H 1.48494 * 109.47246 * 150.00307 * 19 17 15 22 22 H 1.48499 * 109.47232 * 29.99926 * 19 17 15 23 23 C 1.47016 * 108.70228 * 335.54984 * 14 13 12 24 24 C 1.38733 * 119.88461 * 0.28136 * 8 7 6 25 25 C 1.38143 * 119.94735 * 359.42215 * 24 8 7 26 26 H 1.09002 * 109.46699 * 269.99822 * 1 2 3 27 27 H 1.08999 * 109.47317 * 29.99959 * 1 2 3 28 28 H 1.09002 * 109.47308 * 149.99837 * 1 2 3 29 29 H 1.08996 * 109.47474 * 59.99724 * 4 2 1 30 30 H 1.09002 * 109.46788 * 299.99092 * 4 2 1 31 31 H 1.08004 * 119.97178 * 0.02562 * 6 5 4 32 32 H 1.07998 * 120.03400 * 179.97438 * 7 6 5 33 33 H 1.08993 * 111.00370 * 324.20500 * 12 10 9 34 34 H 1.09004 * 111.00585 * 88.02476 * 12 10 9 35 35 H 1.08993 * 110.50020 * 278.45067 * 13 12 10 36 36 H 1.09003 * 110.33820 * 156.05899 * 13 12 10 37 37 H 0.97008 * 120.00020 * 354.90956 * 18 17 15 38 38 H 1.09008 * 109.88306 * 120.70325 * 23 14 13 39 39 H 1.09002 * 109.88515 * 241.71062 * 23 14 13 40 40 H 1.08007 * 120.02452 * 179.71756 * 24 8 7 41 41 H 1.07996 * 119.97476 * 180.32170 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7421 -1.0297 -0.0011 6 6 4.4211 -0.9038 1.1968 7 6 5.7792 -0.6508 1.1991 8 6 6.4619 -0.5235 -0.0019 9 8 7.7979 -0.2752 -0.0024 10 6 8.4147 -0.0404 1.2652 11 1 7.7603 0.5489 1.9075 12 6 9.7887 0.6577 1.0862 13 6 10.5324 0.2096 2.3717 14 7 10.0970 -1.1816 2.5909 15 6 10.7917 -2.1352 3.2861 16 1 10.5163 -3.1758 3.1977 17 6 11.8499 -1.7645 4.1044 18 7 12.8120 -2.6237 4.3658 19 14 11.9083 -0.0461 4.8345 20 1 12.6318 0.8612 3.9078 21 1 12.6153 -0.0867 6.1398 22 1 10.5245 0.4533 5.0364 23 6 8.7904 -1.3740 1.9448 24 6 5.7773 -0.6450 -1.2025 25 6 4.4204 -0.9041 -1.1994 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.9972 -1.8763 -0.8907 30 1 1.9972 -1.8770 0.8893 31 1 3.8893 -1.0034 2.1315 32 1 6.3091 -0.5522 2.1349 33 1 10.2963 0.2976 0.1915 34 1 9.6756 1.7416 1.0594 35 1 10.2446 0.8348 3.2169 36 1 11.6110 0.2500 2.2190 37 1 12.7455 -3.5378 4.0481 38 1 8.8592 -2.1645 1.1974 39 1 8.0419 -1.6354 2.6928 40 1 6.3057 -0.5418 -2.1388 41 1 3.8880 -1.0039 -2.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226847618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:14 Heat of formation + Delta-G solvation = -24.105669 kcal Electronic energy + Delta-G solvation = -22345.515016 eV Core-core repulsion = 18998.625234 eV Total energy + Delta-G solvation = -3346.889782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40617 -39.59120 -37.98595 -36.37695 -32.78677 -32.29785 -31.04683 -30.46349 -29.55554 -28.12052 -26.68076 -24.02026 -22.95329 -21.81365 -20.86998 -20.13094 -19.78469 -18.10528 -17.49516 -16.21147 -16.06076 -16.01575 -15.65324 -15.34311 -14.66139 -14.56620 -14.30296 -13.93142 -13.52833 -13.44312 -13.32149 -12.98819 -12.83755 -12.59379 -12.40115 -12.08783 -12.02214 -11.74791 -11.47443 -11.31467 -11.14769 -10.95806 -10.53439 -10.37626 -10.04223 -9.90971 -9.66670 -9.28219 -8.97004 -8.50566 -7.99364 -7.12742 -6.34863 -3.24343 1.37618 1.41392 1.70509 3.35077 3.40044 3.50603 3.60728 3.66008 4.01991 4.50303 4.57181 4.67201 4.73750 4.83546 4.93186 4.95517 5.01382 5.12936 5.14376 5.23215 5.24595 5.29069 5.38070 5.41804 5.54319 5.60693 5.69121 5.84401 5.94753 6.03255 6.17695 6.25364 6.37025 6.45110 6.50916 6.52421 6.54797 6.69277 6.85237 7.26149 7.62639 7.69394 8.31760 9.00657 9.54978 10.21920 11.12405 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031326 B = 0.003132 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.603040 B = 8937.021791 C = 9066.913180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.350 3.650 3 O -0.446 6.446 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.204 4.204 8 C 0.141 3.859 9 O -0.304 6.304 10 C 0.070 3.930 11 H 0.080 0.920 12 C -0.121 4.121 13 C 0.109 3.891 14 N -0.604 5.604 15 C -0.330 4.330 16 H 0.075 0.925 17 C -0.018 4.018 18 N -0.917 5.917 19 Si 1.062 2.938 20 H -0.292 1.292 21 H -0.297 1.297 22 H -0.288 1.288 23 C 0.116 3.884 24 C -0.155 4.155 25 C -0.071 4.071 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.263 0.737 38 H 0.040 0.960 39 H 0.031 0.969 40 H 0.129 0.871 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.723 4.615 -10.341 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.224 3.776 3 O -0.319 6.319 4 C -0.163 4.163 5 C -0.127 4.127 6 C -0.085 4.085 7 C -0.222 4.222 8 C 0.095 3.905 9 O -0.217 6.217 10 C 0.013 3.987 11 H 0.098 0.902 12 C -0.159 4.159 13 C -0.017 4.017 14 N -0.333 5.333 15 C -0.457 4.457 16 H 0.093 0.907 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.894 3.106 20 H -0.219 1.219 21 H -0.224 1.224 22 H -0.215 1.215 23 C -0.010 4.010 24 C -0.174 4.174 25 C -0.089 4.089 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.147 0.853 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.285 6.113 -9.534 24.997 hybrid contribution -1.161 -1.225 -0.600 1.791 sum -23.446 4.888 -10.134 26.006 Atomic orbital electron populations 1.22305 0.94506 1.04694 1.04643 1.24663 0.91644 0.90376 0.70909 1.90458 1.71895 1.34979 1.34558 1.21088 0.92461 0.97519 1.05188 1.19235 0.94143 1.05770 0.93535 1.20728 0.93532 0.97015 0.97255 1.21389 0.95650 1.07477 0.97728 1.19088 0.83292 0.94122 0.93978 1.86128 1.18339 1.84456 1.32740 1.23601 0.94293 0.97830 0.82959 0.90247 1.22884 0.93367 0.99252 1.00398 1.22054 0.98966 0.87007 0.93629 1.44694 1.17153 1.08349 1.63072 1.20020 1.14036 0.87959 1.23693 0.90739 1.25920 0.92520 1.06453 0.96980 1.70911 1.28066 1.05913 1.50878 0.83844 0.75086 0.75141 0.76545 1.21911 1.22444 1.21474 1.21820 0.89186 0.94371 0.95637 1.20369 0.94021 1.06611 0.96353 1.20681 0.93253 0.97778 0.97232 0.88735 0.89810 0.89698 0.87741 0.87708 0.86213 0.84966 0.89847 0.90655 0.94963 0.91439 0.92619 0.94206 0.95075 0.85312 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.94 10.25 36.01 0.37 -0.57 16 2 C 0.35 2.92 7.26 -29.03 -0.21 2.71 16 3 O -0.45 -5.89 16.77 6.00 0.10 -5.79 16 4 C -0.13 -0.90 5.75 -29.03 -0.17 -1.07 16 5 C -0.13 -1.43 4.38 -104.60 -0.46 -1.89 16 6 C -0.07 -0.85 9.69 -39.61 -0.38 -1.24 16 7 C -0.20 -3.02 8.76 -39.43 -0.35 -3.36 16 8 C 0.14 2.22 6.62 -39.22 -0.26 1.96 16 9 O -0.30 -5.27 9.88 -19.41 -0.19 -5.46 16 10 C 0.07 1.24 2.77 -24.90 -0.07 1.17 16 11 H 0.08 1.31 6.61 -51.93 -0.34 0.97 16 12 C -0.12 -2.14 6.82 -24.46 -0.17 -2.31 16 13 C 0.11 2.38 4.73 -2.41 -0.01 2.37 16 14 N -0.60 -15.21 3.24 -169.94 -0.55 -15.76 16 15 C -0.33 -9.60 10.42 -15.06 -0.16 -9.76 16 16 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 17 C -0.02 -0.53 5.40 -17.43 -0.09 -0.62 16 18 N -0.92 -28.83 13.70 55.49 0.76 -28.07 16 19 Si 1.06 26.59 24.71 -169.99 -4.20 22.39 16 20 H -0.29 -6.84 6.68 56.52 0.38 -6.47 16 21 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -6.84 6.41 56.52 0.36 -6.48 16 23 C 0.12 2.47 6.48 -3.07 -0.02 2.45 16 24 C -0.15 -2.11 9.99 -39.43 -0.39 -2.50 16 25 C -0.07 -0.83 9.69 -39.61 -0.38 -1.22 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.20 8.12 -51.93 -0.42 -0.22 16 29 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.13 1.98 5.29 -52.49 -0.28 1.70 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.03 0.71 5.61 -51.93 -0.29 0.41 16 36 H 0.07 1.55 6.52 -51.93 -0.34 1.21 16 37 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 38 H 0.04 0.89 8.06 -51.92 -0.42 0.47 16 39 H 0.03 0.65 7.40 -51.93 -0.38 0.27 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -34.80 334.83 -7.70 -42.50 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.91 Total: -0.98 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.75 Total: -13.88 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.21 Total: -43.83 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.09 Total: -11.25 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.20 Total: 22.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.80 -7.70 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226847618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.396 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds