Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20761 * 120.00101 * 2 1 4 4 C 1.50701 * 119.99863 * 180.02562 * 2 1 3 5 5 C 1.50702 * 109.46753 * 179.97438 * 4 2 1 6 6 C 1.38265 * 119.94367 * 90.00062 * 5 4 2 7 7 C 1.38146 * 120.05846 * 180.02562 * 6 5 4 8 8 C 1.38733 * 119.94249 * 359.97438 * 7 6 5 9 9 O 1.35894 * 120.05663 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00258 * 354.66231 * 9 8 7 11 11 H 1.09002 * 110.63567 * 321.39829 * 10 9 8 12 12 C 1.55154 * 110.71974 * 198.06361 * 10 9 8 13 13 C 1.55132 * 101.48064 * 205.96626 * 12 10 9 14 14 N 1.47423 * 104.72276 * 37.29751 * 13 12 10 15 15 C 1.36939 * 125.64783 * 155.81320 * 14 13 12 16 16 H 1.08002 * 120.00152 * 194.59824 * 15 14 13 17 17 C 1.38816 * 120.00001 * 14.59802 * 15 14 13 18 18 N 1.31615 * 119.99860 * 205.61912 * 17 15 14 19 19 Si 1.86796 * 119.99882 * 25.61712 * 17 15 14 20 20 H 1.48506 * 109.47228 * 269.99992 * 19 17 15 21 21 H 1.48494 * 109.47246 * 150.00307 * 19 17 15 22 22 H 1.48499 * 109.47232 * 29.99926 * 19 17 15 23 23 C 1.47016 * 108.70228 * 335.54984 * 14 13 12 24 24 C 1.38733 * 119.88461 * 0.28136 * 8 7 6 25 25 C 1.38143 * 119.94735 * 359.42215 * 24 8 7 26 26 H 1.09002 * 109.46699 * 269.99822 * 1 2 3 27 27 H 1.08999 * 109.47317 * 29.99959 * 1 2 3 28 28 H 1.09002 * 109.47308 * 149.99837 * 1 2 3 29 29 H 1.08996 * 109.47474 * 59.99724 * 4 2 1 30 30 H 1.09002 * 109.46788 * 299.99092 * 4 2 1 31 31 H 1.08004 * 119.97178 * 0.02562 * 6 5 4 32 32 H 1.07998 * 120.03400 * 179.97438 * 7 6 5 33 33 H 1.08993 * 111.00370 * 324.20500 * 12 10 9 34 34 H 1.09004 * 111.00585 * 88.02476 * 12 10 9 35 35 H 1.08993 * 110.50020 * 278.45067 * 13 12 10 36 36 H 1.09003 * 110.33820 * 156.05899 * 13 12 10 37 37 H 0.97008 * 120.00020 * 354.90956 * 18 17 15 38 38 H 1.09008 * 109.88306 * 120.70325 * 23 14 13 39 39 H 1.09002 * 109.88515 * 241.71062 * 23 14 13 40 40 H 1.08007 * 120.02452 * 179.71756 * 24 8 7 41 41 H 1.07996 * 119.97476 * 180.32170 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7421 -1.0297 -0.0011 6 6 4.4211 -0.9038 1.1968 7 6 5.7792 -0.6508 1.1991 8 6 6.4619 -0.5235 -0.0019 9 8 7.7979 -0.2752 -0.0024 10 6 8.4147 -0.0404 1.2652 11 1 7.7603 0.5489 1.9075 12 6 9.7887 0.6577 1.0862 13 6 10.5324 0.2096 2.3717 14 7 10.0970 -1.1816 2.5909 15 6 10.7917 -2.1352 3.2861 16 1 10.5163 -3.1758 3.1977 17 6 11.8499 -1.7645 4.1044 18 7 12.8120 -2.6237 4.3658 19 14 11.9083 -0.0461 4.8345 20 1 12.6318 0.8612 3.9078 21 1 12.6153 -0.0867 6.1398 22 1 10.5245 0.4533 5.0364 23 6 8.7904 -1.3740 1.9448 24 6 5.7773 -0.6450 -1.2025 25 6 4.4204 -0.9041 -1.1994 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.9972 -1.8763 -0.8907 30 1 1.9972 -1.8770 0.8893 31 1 3.8893 -1.0034 2.1315 32 1 6.3091 -0.5522 2.1349 33 1 10.2963 0.2976 0.1915 34 1 9.6756 1.7416 1.0594 35 1 10.2446 0.8348 3.2169 36 1 11.6110 0.2500 2.2190 37 1 12.7455 -3.5378 4.0481 38 1 8.8592 -2.1645 1.1974 39 1 8.0419 -1.6354 2.6928 40 1 6.3057 -0.5418 -2.1388 41 1 3.8880 -1.0039 -2.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226847618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -46.832199 kcal Electronic energy + Delta-G solvation = -22346.500513 eV Core-core repulsion = 18998.625234 eV Total energy + Delta-G solvation = -3347.875279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48751 -40.49865 -39.24506 -37.81927 -34.66278 -33.36142 -32.08162 -31.53831 -30.88536 -29.73382 -27.53204 -25.89563 -24.09668 -22.88031 -22.61383 -21.57396 -20.46959 -19.62833 -19.32094 -17.43366 -17.22275 -16.85361 -16.65647 -16.37138 -15.97409 -15.72967 -15.58383 -15.35958 -15.20705 -14.82346 -14.45629 -14.22033 -14.01117 -13.52363 -13.28355 -13.15975 -13.08451 -13.06031 -12.83604 -12.72696 -12.42120 -12.38600 -11.92240 -11.73983 -11.71364 -11.47257 -11.36603 -10.69287 -10.61151 -9.96910 -9.25235 -9.05500 -8.69210 -5.53104 0.37551 0.41164 1.11184 1.39613 1.52743 1.69504 2.08923 2.49503 2.70225 2.98061 3.31643 3.39718 3.49823 3.67594 3.78446 3.82305 3.86112 3.98923 4.23822 4.29476 4.33780 4.34831 4.40071 4.53832 4.67503 4.70122 4.72840 4.79307 4.81108 4.82263 4.84162 4.92025 5.07249 5.10237 5.23464 5.34174 5.40093 5.50593 5.59833 5.85741 6.04125 6.42376 6.68714 6.75105 7.37763 8.04028 8.77627 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031326 B = 0.003132 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.603040 B = 8937.021791 C = 9066.913180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.354 3.646 3 O -0.506 6.506 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.080 4.080 7 C -0.219 4.219 8 C 0.106 3.894 9 O -0.314 6.314 10 C 0.085 3.915 11 H 0.097 0.903 12 C -0.110 4.110 13 C 0.099 3.901 14 N -0.626 5.626 15 C -0.327 4.327 16 H 0.037 0.963 17 C -0.071 4.071 18 N -0.949 5.949 19 Si 1.105 2.895 20 H -0.264 1.264 21 H -0.301 1.301 22 H -0.266 1.266 23 C 0.116 3.884 24 C -0.164 4.164 25 C -0.074 4.074 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.248 0.752 38 H 0.020 0.980 39 H 0.032 0.968 40 H 0.137 0.863 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.893 6.220 -11.319 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.233 3.767 3 O -0.382 6.382 4 C -0.163 4.163 5 C -0.122 4.122 6 C -0.098 4.098 7 C -0.238 4.238 8 C 0.061 3.939 9 O -0.228 6.228 10 C 0.028 3.972 11 H 0.115 0.885 12 C -0.147 4.147 13 C -0.025 4.025 14 N -0.354 5.354 15 C -0.456 4.456 16 H 0.055 0.945 17 C -0.265 4.265 18 N -0.592 5.592 19 Si 0.929 3.071 20 H -0.189 1.189 21 H -0.229 1.229 22 H -0.192 1.192 23 C -0.010 4.010 24 C -0.182 4.182 25 C -0.092 4.092 26 H 0.127 0.873 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.155 0.845 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.507 7.706 -10.555 28.660 hybrid contribution -0.358 -1.884 -0.387 1.957 sum -25.865 5.821 -10.942 28.682 Atomic orbital electron populations 1.22316 0.91438 1.05949 1.05856 1.25241 0.93341 0.89663 0.68476 1.90461 1.73225 1.36844 1.37701 1.21282 0.89251 0.97725 1.08042 1.19760 0.96508 1.03218 0.92756 1.21057 0.92929 0.96859 0.98926 1.21447 0.96773 1.08482 0.97101 1.19385 0.82719 0.96581 0.95189 1.86089 1.19600 1.85214 1.31890 1.23355 0.94906 0.95453 0.83481 0.88521 1.22843 0.92332 1.01615 0.97958 1.22243 0.98857 0.85224 0.96170 1.44750 1.18723 1.09219 1.62734 1.19877 1.14374 0.87537 1.23770 0.94490 1.27272 0.92134 1.09912 0.97230 1.71034 1.29728 1.05671 1.52757 0.83330 0.76527 0.71382 0.75879 1.18923 1.22940 1.19156 1.21866 0.87621 0.96370 0.95107 1.20656 0.95074 1.06467 0.96043 1.21118 0.92594 0.96607 0.98884 0.87348 0.90370 0.86653 0.84453 0.85148 0.84402 0.85887 0.90108 0.86552 0.93578 0.92675 0.94237 0.96207 0.95050 0.84490 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 10.25 71.24 0.73 -0.37 16 2 C 0.35 4.85 7.26 29.10 0.21 5.06 16 3 O -0.51 -12.61 16.77 -1.45 -0.02 -12.64 16 4 C -0.13 -1.31 5.75 29.10 0.17 -1.14 16 5 C -0.12 -2.45 4.38 -19.85 -0.09 -2.54 16 6 C -0.08 -1.91 9.69 22.25 0.22 -1.69 16 7 C -0.22 -6.42 8.76 22.37 0.20 -6.23 16 8 C 0.11 3.30 6.62 22.51 0.15 3.45 16 9 O -0.31 -10.79 9.88 -92.35 -0.91 -11.70 16 10 C 0.08 2.95 2.77 31.78 0.09 3.04 16 11 H 0.10 3.04 6.61 -2.39 -0.02 3.02 16 12 C -0.11 -3.66 6.82 32.06 0.22 -3.44 16 13 C 0.10 4.20 4.73 86.93 0.41 4.61 16 14 N -0.63 -31.84 3.24 -691.55 -2.24 -34.08 16 15 C -0.33 -19.75 10.42 84.03 0.88 -18.87 16 16 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 17 C -0.07 -4.30 5.40 84.86 0.46 -3.85 16 18 N -0.95 -61.74 13.70 21.65 0.30 -61.44 16 19 Si 1.10 53.27 24.71 68.60 1.69 54.96 16 20 H -0.26 -11.49 6.68 99.48 0.66 -10.83 16 21 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 22 H -0.27 -11.78 6.41 99.48 0.64 -11.14 16 23 C 0.12 5.03 6.48 86.73 0.56 5.60 16 24 C -0.16 -4.30 9.99 22.37 0.22 -4.07 16 25 C -0.07 -1.56 9.69 22.25 0.22 -1.34 16 26 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 -0.05 8.12 -2.39 -0.02 -0.06 16 29 H 0.14 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.13 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.12 3.70 5.29 -2.91 -0.02 3.68 16 33 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.05 1.86 5.61 -2.39 -0.01 1.85 16 36 H 0.06 2.46 6.52 -2.39 -0.02 2.44 16 37 H 0.25 16.31 8.73 -92.70 -0.81 15.50 16 38 H 0.02 0.93 8.06 -2.38 -0.02 0.91 16 39 H 0.03 1.35 7.40 -2.39 -0.02 1.33 16 40 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 41 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -80.00 334.83 4.32 -75.68 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.87 Total: 11.01 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.64 Total: -21.79 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -1.94 Total: -95.52 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.94 Total: -24.34 kcal Atomic # 14 Polarization: 53.27 SS G_CDS: 1.69 Total: 54.96 kcal Total: -80.00 4.32 -75.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226847618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.847 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds