Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 119.99894 * 2 1 4 4 C 1.50704 * 119.99653 * 179.97438 * 2 1 3 5 5 C 1.50705 * 109.46604 * 180.02562 * 4 2 1 6 6 C 1.38267 * 119.94306 * 90.00828 * 5 4 2 7 7 C 1.38136 * 120.05667 * 179.97438 * 6 5 4 8 8 C 1.38740 * 119.94614 * 359.97438 * 7 6 5 9 9 O 1.35893 * 120.05800 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00129 * 5.72758 * 9 8 7 11 11 C 1.53514 * 114.17220 * 156.74707 * 10 9 8 12 12 N 1.47478 * 87.93216 * 87.81020 * 11 10 9 13 13 C 1.46908 * 110.99935 * 138.70437 * 12 11 10 14 14 C 1.50695 * 109.47298 * 169.99904 * 13 12 11 15 15 H 1.07997 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99895 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47137 * 269.99510 * 18 16 14 20 20 H 1.48497 * 109.47091 * 29.99663 * 18 16 14 21 21 H 1.48505 * 109.46985 * 149.99800 * 18 16 14 22 22 C 1.47480 * 87.83620 * 27.01209 * 12 11 10 23 23 C 1.38735 * 119.88196 * 0.27544 * 8 7 6 24 24 C 1.38146 * 119.94545 * 359.47276 * 23 8 7 25 25 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47283 * 300.00569 * 1 2 3 27 27 H 1.09003 * 109.46886 * 60.00040 * 1 2 3 28 28 H 1.08997 * 109.46699 * 60.00512 * 4 2 1 29 29 H 1.08992 * 109.47212 * 300.00564 * 4 2 1 30 30 H 1.07997 * 119.97064 * 359.97059 * 6 5 4 31 31 H 1.08002 * 120.03467 * 179.97438 * 7 6 5 32 32 H 1.08995 * 113.25773 * 23.79361 * 10 9 8 33 33 H 1.09004 * 113.47432 * 333.04177 * 11 10 9 34 34 H 1.09003 * 113.47619 * 202.58095 * 11 10 9 35 35 H 1.09000 * 109.46656 * 49.99674 * 13 12 11 36 36 H 1.09002 * 109.46727 * 290.00447 * 13 12 11 37 37 H 0.96999 * 119.99904 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.47421 * 87.75547 * 22 12 11 39 39 H 1.09001 * 113.47458 * 218.21773 * 22 12 11 40 40 H 1.07999 * 120.02605 * 179.72002 * 23 8 7 41 41 H 1.07995 * 119.97012 * 180.23301 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7421 -1.0298 0.0011 6 6 4.4202 -0.9035 1.1994 7 6 5.7784 -0.6516 1.2027 8 6 6.4623 -0.5257 0.0021 9 8 7.7985 -0.2784 0.0026 10 6 8.4590 -0.2846 1.2698 11 6 9.9667 -0.5627 1.1914 12 7 10.1703 0.8866 1.0099 13 6 11.3265 1.3569 1.7847 14 6 11.6535 2.7738 1.3892 15 1 11.0615 3.2750 0.6378 16 6 12.7079 3.4306 1.9874 17 7 12.9936 4.6670 1.6419 18 14 13.7314 2.5639 3.2877 19 1 13.1411 2.8106 4.6279 20 1 13.7462 1.1044 3.0143 21 1 15.1205 3.0879 3.2546 22 6 8.9143 1.0996 1.7528 23 6 5.7786 -0.6477 -1.1989 24 6 4.4213 -0.9048 -1.1967 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9971 -1.8770 -0.8892 29 1 1.9970 -1.8764 0.8907 30 1 3.8875 -1.0019 2.1337 31 1 6.3076 -0.5527 2.1389 32 1 7.9357 -0.8710 2.0250 33 1 10.2546 -1.1539 0.3221 34 1 10.3862 -0.9471 2.1211 35 1 12.1845 0.7159 1.5823 36 1 11.0897 1.3219 2.8481 37 1 13.7351 5.1292 2.0630 38 1 9.0530 1.1588 2.8323 39 1 8.3103 1.9172 1.3593 40 1 6.3078 -0.5456 -2.1348 41 1 3.8893 -1.0035 -2.1314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226851378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -1.561346 kcal Electronic energy + Delta-G solvation = -21828.214052 eV Core-core repulsion = 18482.301864 eV Total energy + Delta-G solvation = -3345.912187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60134 -39.85626 -38.73228 -36.73551 -32.86849 -32.49795 -31.11968 -30.47642 -29.72815 -26.81759 -25.76671 -25.40365 -23.08888 -21.97834 -21.15027 -19.92019 -19.52001 -17.99941 -16.77984 -16.19092 -16.06436 -16.03298 -15.53765 -15.35622 -14.90293 -14.61395 -14.47202 -14.07509 -13.79339 -13.51110 -13.24928 -13.05754 -12.84959 -12.61346 -12.44477 -12.32036 -12.08159 -11.84779 -11.62881 -11.49481 -11.07303 -10.84137 -10.49572 -10.18539 -10.02152 -9.89787 -9.77884 -9.35490 -9.02619 -8.58098 -8.04296 -7.98333 -6.04389 -4.01998 1.31787 1.36560 1.70836 3.21131 3.25818 3.33819 3.34660 3.55582 3.99381 4.40606 4.45976 4.57125 4.64982 4.66717 4.73169 4.80178 4.92154 5.07620 5.10004 5.14140 5.19327 5.25130 5.30693 5.41337 5.56663 5.62426 5.71347 5.72367 5.91222 5.98648 6.04409 6.18456 6.26250 6.36914 6.45203 6.48369 6.65499 6.78316 7.26823 7.29294 7.57839 7.68025 7.81819 8.63563 9.07413 9.56174 11.09095 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031734 B = 0.002711 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.120535 B =10324.947120 C =10638.574004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.348 3.652 3 O -0.444 6.444 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.068 4.068 7 C -0.209 4.209 8 C 0.141 3.859 9 O -0.275 6.275 10 C 0.046 3.954 11 C -0.003 4.003 12 N -0.444 5.444 13 C 0.125 3.875 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.067 3.933 17 N -0.899 5.899 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.268 1.268 21 H -0.284 1.284 22 C -0.007 4.007 23 C -0.152 4.152 24 C -0.069 4.069 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.029 0.971 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.448 -17.241 -0.884 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.222 3.778 3 O -0.316 6.316 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.086 4.086 7 C -0.227 4.227 8 C 0.095 3.905 9 O -0.187 6.187 10 C -0.011 4.011 11 C -0.133 4.133 12 N -0.166 5.166 13 C -0.002 4.002 14 C -0.544 4.544 15 H 0.099 0.901 16 C -0.135 4.135 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.210 1.210 22 C -0.136 4.136 23 C -0.170 4.170 24 C -0.087 4.087 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.149 0.851 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.704 -16.168 -1.674 28.742 hybrid contribution 0.591 -0.622 1.856 2.045 sum -23.113 -16.791 0.183 28.569 Atomic orbital electron populations 1.22274 0.94530 1.04470 1.04808 1.24664 0.91638 0.90387 0.71074 1.90483 1.71783 1.34961 1.34398 1.21105 0.92429 0.97590 1.05077 1.19250 0.94176 1.05773 0.93546 1.20696 0.93479 0.97196 0.97217 1.21259 0.95555 1.08351 0.97566 1.19157 0.83547 0.93782 0.94056 1.86193 1.17416 1.84342 1.30762 1.23657 0.93716 0.99195 0.84573 1.24061 0.91769 0.95486 1.01962 1.69054 1.02227 1.03010 1.42339 1.20774 0.89993 0.98258 0.91170 1.20958 1.14806 0.95440 1.23238 0.90119 1.24937 0.97029 0.94774 0.96738 1.69898 1.29744 1.11097 1.43083 0.86857 0.80128 0.80355 0.82375 1.20310 1.19277 1.21019 1.24279 0.94595 0.96773 0.98001 1.20408 0.94128 1.05961 0.96551 1.20711 0.93197 0.97519 0.97311 0.90082 0.89130 0.89108 0.87727 0.87800 0.86269 0.85153 0.89503 0.89374 0.90535 0.95300 0.98627 0.92639 0.90553 0.89461 0.85065 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.90 10.33 36.01 0.37 -0.52 16 2 C 0.35 2.82 7.26 -29.03 -0.21 2.61 16 3 O -0.44 -5.90 16.77 6.00 0.10 -5.80 16 4 C -0.12 -0.80 5.68 -29.03 -0.16 -0.97 16 5 C -0.13 -1.32 4.38 -104.60 -0.46 -1.78 16 6 C -0.07 -0.76 9.69 -39.61 -0.38 -1.14 16 7 C -0.21 -2.70 9.03 -39.43 -0.36 -3.06 16 8 C 0.14 2.08 6.68 -39.21 -0.26 1.82 16 9 O -0.27 -4.67 10.19 -19.40 -0.20 -4.87 16 10 C 0.05 0.72 4.06 -26.20 -0.11 0.61 16 11 C 0.00 -0.06 7.52 -7.55 -0.06 -0.11 16 12 N -0.44 -9.79 6.32 -246.11 -1.55 -11.34 16 13 C 0.13 3.10 3.64 -4.97 -0.02 3.08 16 14 C -0.51 -15.01 9.94 -34.44 -0.34 -15.36 16 15 H 0.08 2.66 8.06 -52.49 -0.42 2.23 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.01 -0.13 7.56 -7.55 -0.06 -0.19 16 23 C -0.15 -2.02 9.99 -39.43 -0.39 -2.41 16 24 C -0.07 -0.77 9.69 -39.61 -0.38 -1.16 16 25 H 0.08 0.15 8.00 -51.93 -0.42 -0.26 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.53 5.89 -52.49 -0.31 1.22 16 32 H 0.09 1.09 5.90 -51.93 -0.31 0.79 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.16 7.91 -51.93 -0.41 0.75 16 35 H 0.03 0.72 7.14 -51.93 -0.37 0.35 16 36 H 0.00 -0.09 6.73 -51.93 -0.35 -0.44 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 39 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -35.91 344.64 -9.21 -45.12 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.94 Total: -1.13 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.92 Total: -16.70 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.78 Total: -38.83 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.10 Total: -10.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.91 -9.21 -45.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226851378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.556 kcal (2) G-P(sol) polarization free energy of solvation -35.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds