Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 119.99894 * 2 1 4 4 C 1.50704 * 119.99653 * 179.97438 * 2 1 3 5 5 C 1.50705 * 109.46604 * 180.02562 * 4 2 1 6 6 C 1.38267 * 119.94306 * 90.00828 * 5 4 2 7 7 C 1.38136 * 120.05667 * 179.97438 * 6 5 4 8 8 C 1.38740 * 119.94614 * 359.97438 * 7 6 5 9 9 O 1.35893 * 120.05800 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00129 * 5.72758 * 9 8 7 11 11 C 1.53514 * 114.17220 * 156.74707 * 10 9 8 12 12 N 1.47478 * 87.93216 * 87.81020 * 11 10 9 13 13 C 1.46908 * 110.99935 * 138.70437 * 12 11 10 14 14 C 1.50695 * 109.47298 * 169.99904 * 13 12 11 15 15 H 1.07997 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99895 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47137 * 269.99510 * 18 16 14 20 20 H 1.48497 * 109.47091 * 29.99663 * 18 16 14 21 21 H 1.48505 * 109.46985 * 149.99800 * 18 16 14 22 22 C 1.47480 * 87.83620 * 27.01209 * 12 11 10 23 23 C 1.38735 * 119.88196 * 0.27544 * 8 7 6 24 24 C 1.38146 * 119.94545 * 359.47276 * 23 8 7 25 25 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47283 * 300.00569 * 1 2 3 27 27 H 1.09003 * 109.46886 * 60.00040 * 1 2 3 28 28 H 1.08997 * 109.46699 * 60.00512 * 4 2 1 29 29 H 1.08992 * 109.47212 * 300.00564 * 4 2 1 30 30 H 1.07997 * 119.97064 * 359.97059 * 6 5 4 31 31 H 1.08002 * 120.03467 * 179.97438 * 7 6 5 32 32 H 1.08995 * 113.25773 * 23.79361 * 10 9 8 33 33 H 1.09004 * 113.47432 * 333.04177 * 11 10 9 34 34 H 1.09003 * 113.47619 * 202.58095 * 11 10 9 35 35 H 1.09000 * 109.46656 * 49.99674 * 13 12 11 36 36 H 1.09002 * 109.46727 * 290.00447 * 13 12 11 37 37 H 0.96999 * 119.99904 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.47421 * 87.75547 * 22 12 11 39 39 H 1.09001 * 113.47458 * 218.21773 * 22 12 11 40 40 H 1.07999 * 120.02605 * 179.72002 * 23 8 7 41 41 H 1.07995 * 119.97012 * 180.23301 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7421 -1.0298 0.0011 6 6 4.4202 -0.9035 1.1994 7 6 5.7784 -0.6516 1.2027 8 6 6.4623 -0.5257 0.0021 9 8 7.7985 -0.2784 0.0026 10 6 8.4590 -0.2846 1.2698 11 6 9.9667 -0.5627 1.1914 12 7 10.1703 0.8866 1.0099 13 6 11.3265 1.3569 1.7847 14 6 11.6535 2.7738 1.3892 15 1 11.0615 3.2750 0.6378 16 6 12.7079 3.4306 1.9874 17 7 12.9936 4.6670 1.6419 18 14 13.7314 2.5639 3.2877 19 1 13.1411 2.8106 4.6279 20 1 13.7462 1.1044 3.0143 21 1 15.1205 3.0879 3.2546 22 6 8.9143 1.0996 1.7528 23 6 5.7786 -0.6477 -1.1989 24 6 4.4213 -0.9048 -1.1967 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9971 -1.8770 -0.8892 29 1 1.9970 -1.8764 0.8907 30 1 3.8875 -1.0019 2.1337 31 1 6.3076 -0.5527 2.1389 32 1 7.9357 -0.8710 2.0250 33 1 10.2546 -1.1539 0.3221 34 1 10.3862 -0.9471 2.1211 35 1 12.1845 0.7159 1.5823 36 1 11.0897 1.3219 2.8481 37 1 13.7351 5.1292 2.0630 38 1 9.0530 1.1588 2.8323 39 1 8.3103 1.9172 1.3593 40 1 6.3078 -0.5456 -2.1348 41 1 3.8893 -1.0035 -2.1314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226851378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = -27.886204 kcal Electronic energy + Delta-G solvation = -21829.355583 eV Core-core repulsion = 18482.301864 eV Total energy + Delta-G solvation = -3347.053719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77512 -40.75463 -39.78919 -37.87191 -34.98675 -33.34384 -32.10385 -31.64354 -30.90606 -27.82078 -27.25427 -26.83708 -24.26662 -23.09136 -22.72536 -20.87492 -20.41636 -19.14299 -19.00060 -17.30232 -17.01716 -16.80147 -16.65313 -16.39345 -16.23363 -15.86184 -15.58694 -15.32016 -15.07856 -14.65396 -14.49975 -14.37121 -14.21517 -13.68084 -13.33540 -13.21230 -13.04620 -13.04061 -12.68337 -12.59030 -12.39273 -12.37295 -11.85982 -11.79868 -11.60786 -11.46957 -11.37552 -10.83258 -10.59383 -9.94067 -9.62936 -9.00514 -8.32646 -6.38259 0.40413 0.44055 1.12534 1.31304 1.35314 1.46158 2.08448 2.31388 2.70947 2.99170 3.22925 3.29335 3.42878 3.71411 3.81033 3.87804 3.99774 4.21823 4.34579 4.35814 4.40478 4.43065 4.44504 4.51576 4.60919 4.68978 4.69657 4.75777 4.82181 4.83426 4.84545 4.93171 5.10203 5.23846 5.36662 5.41543 5.43686 5.62854 5.67235 5.88518 5.94013 6.49063 6.55035 6.67816 6.71130 7.25134 8.85159 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031734 B = 0.002711 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.120535 B =10324.947120 C =10638.574004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.352 3.648 3 O -0.509 6.509 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.076 4.076 7 C -0.216 4.216 8 C 0.106 3.894 9 O -0.304 6.304 10 C 0.066 3.934 11 C 0.001 3.999 12 N -0.490 5.490 13 C 0.137 3.863 14 C -0.524 4.524 15 H 0.022 0.978 16 C 0.001 3.999 17 N -0.952 5.952 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.244 1.244 21 H -0.280 1.280 22 C -0.013 4.013 23 C -0.172 4.172 24 C -0.075 4.075 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.032 0.968 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.126 0.874 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.428 -20.747 1.096 33.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.230 3.770 3 O -0.386 6.386 4 C -0.161 4.161 5 C -0.125 4.125 6 C -0.094 4.094 7 C -0.235 4.235 8 C 0.061 3.939 9 O -0.218 6.218 10 C 0.010 3.990 11 C -0.128 4.128 12 N -0.212 5.212 13 C 0.009 3.991 14 C -0.563 4.563 15 H 0.040 0.960 16 C -0.196 4.196 17 N -0.592 5.592 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.167 1.167 21 H -0.206 1.206 22 C -0.143 4.143 23 C -0.190 4.190 24 C -0.093 4.093 25 H 0.133 0.867 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.733 -19.716 0.291 32.418 hybrid contribution 1.015 0.509 1.104 1.584 sum -24.717 -19.207 1.395 31.334 Atomic orbital electron populations 1.22293 0.91556 1.06800 1.04922 1.25330 0.93363 0.89860 0.68398 1.90488 1.73219 1.37100 1.37797 1.21295 0.89186 0.97425 1.08166 1.19776 0.96488 1.03387 0.92840 1.21105 0.92976 0.96474 0.98831 1.21447 0.96554 1.08313 0.97158 1.19441 0.82873 0.96175 0.95415 1.86142 1.18966 1.85184 1.31502 1.23514 0.93509 0.96919 0.85101 1.24156 0.92820 0.92287 1.03492 1.68937 1.02305 1.06792 1.43209 1.20540 0.91431 0.94968 0.92140 1.21226 1.14594 0.98190 1.22244 0.95995 1.26048 0.98420 0.95498 0.99592 1.70084 1.30792 1.13307 1.45020 0.85548 0.77618 0.79988 0.78755 1.18613 1.16732 1.20599 1.24355 0.93215 0.98141 0.98566 1.20633 0.95383 1.06811 0.96210 1.21071 0.92393 0.96811 0.99031 0.86683 0.88927 0.88923 0.84567 0.84547 0.83639 0.84211 0.85596 0.89149 0.87611 0.94948 0.96972 0.92295 0.88869 0.92242 0.85570 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 10.33 71.24 0.74 -0.37 16 2 C 0.35 4.82 7.26 29.10 0.21 5.03 16 3 O -0.51 -13.28 16.77 -1.46 -0.02 -13.30 16 4 C -0.12 -1.11 5.68 29.10 0.17 -0.94 16 5 C -0.12 -2.31 4.38 -19.85 -0.09 -2.40 16 6 C -0.08 -1.54 9.69 22.25 0.22 -1.33 16 7 C -0.22 -5.39 9.03 22.37 0.20 -5.19 16 8 C 0.11 3.18 6.68 22.51 0.15 3.33 16 9 O -0.30 -10.62 10.19 -92.35 -0.94 -11.56 16 10 C 0.07 2.03 4.06 30.94 0.13 2.16 16 11 C 0.00 0.04 7.52 83.57 0.63 0.66 16 12 N -0.49 -21.95 6.32 -932.94 -5.89 -27.84 16 13 C 0.14 6.76 3.64 85.55 0.31 7.07 16 14 C -0.52 -32.42 9.94 25.60 0.25 -32.17 16 15 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 16 C 0.00 0.07 5.47 84.65 0.46 0.54 16 17 N -0.95 -62.06 13.96 21.45 0.30 -61.76 16 18 Si 0.96 44.53 27.47 68.60 1.88 46.41 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C -0.01 -0.51 7.56 83.57 0.63 0.12 16 23 C -0.17 -4.68 9.99 22.37 0.22 -4.46 16 24 C -0.08 -1.59 9.69 22.25 0.22 -1.38 16 25 H 0.11 -0.14 8.00 -2.39 -0.02 -0.16 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.14 0.43 8.08 -2.39 -0.02 0.41 16 29 H 0.14 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.14 3.04 5.89 -2.91 -0.02 3.02 16 32 H 0.13 2.85 5.90 -2.39 -0.01 2.84 16 33 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.11 2.85 7.91 -2.39 -0.02 2.84 16 35 H 0.03 1.56 7.14 -2.39 -0.02 1.55 16 36 H 0.01 0.57 6.73 -2.39 -0.02 0.56 16 37 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 38 H 0.09 3.17 7.42 -2.39 -0.02 3.15 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -84.99 344.64 0.74 -84.25 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.96 Total: 13.11 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.45 Total: -29.31 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -5.59 Total: -89.61 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.97 Total: -24.86 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -84.99 0.74 -84.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226851378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.368 kcal (2) G-P(sol) polarization free energy of solvation -84.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds