Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 120.00153 * 2 1 4 4 N 1.34783 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.62803 * 5.52598 * 4 2 1 6 6 C 1.53194 * 108.77178 * 233.62820 * 5 4 2 7 7 C 1.53034 * 109.31427 * 305.36762 * 6 5 4 8 8 O 1.42910 * 109.46000 * 181.38685 * 7 6 5 9 9 C 1.35634 * 116.99881 * 155.89649 * 8 7 6 10 10 C 1.38451 * 120.26969 * 5.44105 * 9 8 7 11 11 C 1.38304 * 120.05052 * 180.25832 * 10 9 8 12 12 C 1.38824 * 120.59074 * 359.73818 * 11 10 9 13 13 C 1.36488 * 120.54233 * 359.97379 * 12 11 10 14 14 C 1.40722 * 119.92392 * 0.02893 * 13 12 11 15 15 C 1.41156 * 120.28537 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00044 * 208.00046 * 15 14 13 17 17 C 1.39939 * 120.00282 * 28.00041 * 15 14 13 18 18 N 1.30861 * 119.99909 * 197.26309 * 17 15 14 19 19 Si 1.86800 * 119.99686 * 17.26715 * 17 15 14 20 20 H 1.48495 * 109.47224 * 269.99708 * 19 17 15 21 21 H 1.48497 * 109.47149 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46876 * 149.99851 * 19 17 15 23 23 C 1.53037 * 109.52868 * 61.37301 * 7 6 5 24 24 C 1.46926 * 120.62780 * 185.54738 * 4 2 1 25 25 H 1.09004 * 109.47285 * 185.49707 * 1 2 3 26 26 H 1.08991 * 109.47444 * 305.50185 * 1 2 3 27 27 H 1.09007 * 109.46825 * 65.50527 * 1 2 3 28 28 H 1.09000 * 109.58186 * 113.84587 * 5 4 2 29 29 H 1.08994 * 109.70621 * 353.48754 * 5 4 2 30 30 H 1.08998 * 109.49482 * 185.41225 * 6 5 4 31 31 H 1.09002 * 109.49830 * 65.32385 * 6 5 4 32 32 H 1.09001 * 109.46481 * 301.35634 * 7 6 5 33 33 H 1.07998 * 119.97250 * 359.96796 * 10 9 8 34 34 H 1.07991 * 119.70582 * 179.75538 * 11 10 9 35 35 H 1.08005 * 119.73166 * 179.97438 * 12 11 10 36 36 H 1.07995 * 120.03821 * 180.02562 * 13 12 11 37 37 H 0.97003 * 120.00162 * 354.89939 * 18 17 15 38 38 H 1.09001 * 109.49780 * 58.58137 * 23 7 6 39 39 H 1.09005 * 109.50011 * 178.67108 * 23 7 6 40 40 H 1.08993 * 109.58692 * 246.15600 * 24 4 2 41 41 H 1.08997 * 109.59239 * 6.44110 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4653 -2.4448 -0.1207 6 6 1.8757 -3.3520 1.0436 7 6 3.4000 -3.4852 1.0685 8 8 3.7844 -4.3569 2.1338 9 6 4.9818 -4.9829 2.0155 10 6 5.8245 -4.6833 0.9587 11 6 7.0422 -5.3283 0.8396 12 6 7.4348 -6.2750 1.7760 13 6 6.6255 -6.5846 2.8305 14 6 5.3818 -5.9419 2.9734 15 6 4.5385 -6.2567 4.0607 16 1 3.4684 -6.1482 3.9633 17 6 5.0891 -6.7094 5.2650 18 7 4.3319 -7.3149 6.1439 19 14 6.9049 -6.4491 5.6179 20 1 7.6787 -7.6123 5.1146 21 1 7.3693 -5.2137 4.9374 22 1 7.1101 -6.3145 7.0826 23 6 4.0304 -2.1075 1.2844 24 6 3.6449 -1.1862 0.1227 25 1 -0.3634 -1.0230 0.0984 26 1 -0.3634 0.5967 0.8365 27 1 -0.3633 0.4261 -0.9352 28 1 1.7267 -2.9217 -1.0653 29 1 0.3903 -2.2687 -0.0854 30 1 1.4265 -4.3365 0.9133 31 1 1.5330 -2.9167 1.9823 32 1 3.7442 -3.8974 0.1200 33 1 5.5288 -3.9489 0.2242 34 1 7.6934 -5.0932 0.0109 35 1 8.3885 -6.7705 1.6692 36 1 6.9392 -7.3220 3.5545 37 1 3.3759 -7.3847 5.9944 38 1 3.6674 -1.6840 2.2209 39 1 5.1152 -2.2062 1.3257 40 1 4.0839 -1.5606 -0.8020 41 1 4.0085 -0.1774 0.3176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230273165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -53.978182 kcal Electronic energy + Delta-G solvation = -23144.140794 eV Core-core repulsion = 19795.955642 eV Total energy + Delta-G solvation = -3348.185152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40160 -39.10871 -37.33880 -35.93188 -33.69733 -32.47042 -31.54419 -30.32927 -29.38094 -28.80171 -25.14042 -24.55454 -23.38261 -21.95087 -20.68142 -20.37539 -19.11230 -18.11613 -17.54471 -17.00664 -16.03958 -15.65000 -15.14598 -14.77197 -14.68272 -14.37262 -14.01241 -13.74423 -13.55435 -13.46637 -13.12775 -12.72243 -12.65330 -12.32602 -12.18056 -12.09788 -11.97958 -11.64374 -11.29699 -11.15523 -10.82393 -10.67520 -10.48603 -10.24062 -9.98369 -9.84038 -9.68656 -9.38807 -9.03381 -8.84024 -7.80257 -7.37319 -7.09340 -4.42479 2.45608 2.56600 2.65485 2.82943 3.20869 3.37388 3.56014 3.92991 4.04059 4.36880 4.52679 4.54700 4.80180 4.91765 4.98222 5.11215 5.16148 5.17061 5.30631 5.36889 5.43415 5.49372 5.66262 5.68828 5.82409 5.86600 5.94562 6.02350 6.09604 6.19501 6.34050 6.40292 6.59088 6.82621 6.99919 7.22312 7.42059 7.47303 7.61624 7.75217 7.92145 7.99608 8.15214 8.45791 8.61726 8.88118 10.05050 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.004214 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.992792 B = 6643.698729 C = 7214.881008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.552 6.552 4 N -0.613 5.613 5 C 0.106 3.894 6 C -0.131 4.131 7 C 0.089 3.911 8 O -0.298 6.298 9 C 0.021 3.979 10 C -0.169 4.169 11 C -0.220 4.220 12 C -0.098 4.098 13 C -0.232 4.232 14 C 0.085 3.915 15 C -0.497 4.497 16 H 0.080 0.920 17 C 0.040 3.960 18 N -0.819 5.819 19 Si 1.075 2.925 20 H -0.277 1.277 21 H -0.263 1.263 22 H -0.291 1.291 23 C -0.159 4.159 24 C 0.115 3.885 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.285 0.715 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 7.883 -10.785 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.302 3.698 3 O -0.430 6.430 4 N -0.347 5.347 5 C -0.017 4.017 6 C -0.169 4.169 7 C 0.032 3.968 8 O -0.212 6.212 9 C -0.023 4.023 10 C -0.188 4.188 11 C -0.240 4.240 12 C -0.117 4.117 13 C -0.251 4.251 14 C 0.082 3.918 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.179 4.179 18 N -0.442 5.442 19 Si 0.902 3.098 20 H -0.205 1.205 21 H -0.188 1.188 22 H -0.219 1.219 23 C -0.198 4.198 24 C -0.007 4.007 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.656 8.072 -9.463 13.281 hybrid contribution -1.229 0.160 -1.333 1.820 sum -5.885 8.232 -10.796 14.797 Atomic orbital electron populations 1.22037 0.91971 1.04689 1.05228 1.20801 0.90634 0.83036 0.75318 1.90705 1.70718 1.31113 1.50458 1.48258 1.07702 1.06228 1.72500 1.21913 0.97639 0.83385 0.98718 1.21947 0.95103 1.00611 0.99275 1.22056 0.93988 0.89446 0.91349 1.86037 1.34994 1.57506 1.42685 1.19118 0.86514 0.97411 0.99261 1.20731 0.96458 1.03081 0.98493 1.20129 0.97888 1.03982 1.01983 1.20284 0.98155 0.97910 0.95319 1.20661 0.97606 1.05348 1.01496 1.17206 0.92448 0.89371 0.92791 1.20490 0.95973 1.39112 0.97005 0.90232 1.27268 1.08263 0.89733 0.92609 1.70550 1.08601 1.27054 1.38007 0.83561 0.72299 0.78684 0.75210 1.20451 1.18779 1.21884 1.22510 1.02533 0.95624 0.99112 1.21586 0.79268 1.01640 0.98253 0.89754 0.88696 0.88821 0.90840 0.88436 0.89640 0.90414 0.91682 0.88158 0.88838 0.88747 0.87223 0.90343 0.90638 0.89595 0.91431 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 10.08 36.00 0.36 -1.01 16 2 C 0.51 6.28 7.80 -10.99 -0.09 6.19 16 3 O -0.55 -9.04 16.54 5.55 0.09 -8.94 16 4 N -0.61 -7.08 2.97 -172.77 -0.51 -7.59 16 5 C 0.11 0.97 6.35 -3.71 -0.02 0.95 16 6 C -0.13 -1.61 5.73 -26.61 -0.15 -1.76 16 7 C 0.09 1.40 2.08 -26.69 -0.06 1.34 16 8 O -0.30 -6.39 9.13 -18.60 -0.17 -6.56 16 9 C 0.02 0.49 6.62 -38.33 -0.25 0.24 16 10 C -0.17 -3.49 8.20 -39.48 -0.32 -3.81 16 11 C -0.22 -4.53 10.04 -39.34 -0.39 -4.93 16 12 C -0.10 -2.12 9.97 -40.00 -0.40 -2.52 16 13 C -0.23 -5.60 7.20 -39.28 -0.28 -5.88 16 14 C 0.09 2.19 5.17 -106.68 -0.55 1.64 16 15 C -0.50 -13.56 9.09 -37.84 -0.34 -13.91 16 16 H 0.08 2.28 7.86 -52.48 -0.41 1.87 16 17 C 0.04 1.06 5.43 -17.33 -0.09 0.97 16 18 N -0.82 -22.23 13.66 55.55 0.76 -21.47 16 19 Si 1.08 24.67 24.86 -169.99 -4.23 20.45 16 20 H -0.28 -5.99 6.43 56.52 0.36 -5.63 16 21 H -0.26 -6.04 6.99 56.52 0.40 -5.64 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.16 -2.34 5.31 -26.61 -0.14 -2.48 16 24 C 0.11 1.45 6.42 -3.71 -0.02 1.42 16 25 H 0.08 0.47 5.17 -51.93 -0.27 0.20 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.62 5.07 -51.93 -0.26 0.36 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.99 6.38 -51.93 -0.33 0.66 16 33 H 0.10 1.77 5.42 -52.49 -0.28 1.49 16 34 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.11 2.62 4.25 -52.49 -0.22 2.39 16 37 H 0.29 7.55 8.73 -40.82 -0.36 7.19 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.34 6.83 -51.93 -0.35 0.98 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.28 7.04 -51.93 -0.37 0.91 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -31.15 323.01 -7.46 -38.61 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.50 Total: 4.19 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -2.76 Total: -23.56 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.25 Total: -29.06 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.08 Total: -15.50 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.23 Total: 20.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.15 -7.46 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230273165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.367 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds