Wall clock time and date at job start Tue Mar 31 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21286 * 120.00153 * 2 1 4 4 N 1.34783 * 120.00036 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.62803 * 5.52598 * 4 2 1 6 6 C 1.53194 * 108.77178 * 233.62820 * 5 4 2 7 7 C 1.53034 * 109.31427 * 305.36762 * 6 5 4 8 8 O 1.42910 * 109.46000 * 181.38685 * 7 6 5 9 9 C 1.35634 * 116.99881 * 155.89649 * 8 7 6 10 10 C 1.38451 * 120.26969 * 5.44105 * 9 8 7 11 11 C 1.38304 * 120.05052 * 180.25832 * 10 9 8 12 12 C 1.38824 * 120.59074 * 359.73818 * 11 10 9 13 13 C 1.36488 * 120.54233 * 359.97379 * 12 11 10 14 14 C 1.40722 * 119.92392 * 0.02893 * 13 12 11 15 15 C 1.41156 * 120.28537 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00044 * 208.00046 * 15 14 13 17 17 C 1.39939 * 120.00282 * 28.00041 * 15 14 13 18 18 N 1.30861 * 119.99909 * 197.26309 * 17 15 14 19 19 Si 1.86800 * 119.99686 * 17.26715 * 17 15 14 20 20 H 1.48495 * 109.47224 * 269.99708 * 19 17 15 21 21 H 1.48497 * 109.47149 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46876 * 149.99851 * 19 17 15 23 23 C 1.53037 * 109.52868 * 61.37301 * 7 6 5 24 24 C 1.46926 * 120.62780 * 185.54738 * 4 2 1 25 25 H 1.09004 * 109.47285 * 185.49707 * 1 2 3 26 26 H 1.08991 * 109.47444 * 305.50185 * 1 2 3 27 27 H 1.09007 * 109.46825 * 65.50527 * 1 2 3 28 28 H 1.09000 * 109.58186 * 113.84587 * 5 4 2 29 29 H 1.08994 * 109.70621 * 353.48754 * 5 4 2 30 30 H 1.08998 * 109.49482 * 185.41225 * 6 5 4 31 31 H 1.09002 * 109.49830 * 65.32385 * 6 5 4 32 32 H 1.09001 * 109.46481 * 301.35634 * 7 6 5 33 33 H 1.07998 * 119.97250 * 359.96796 * 10 9 8 34 34 H 1.07991 * 119.70582 * 179.75538 * 11 10 9 35 35 H 1.08005 * 119.73166 * 179.97438 * 12 11 10 36 36 H 1.07995 * 120.03821 * 180.02562 * 13 12 11 37 37 H 0.97003 * 120.00162 * 354.89939 * 18 17 15 38 38 H 1.09001 * 109.49780 * 58.58137 * 23 7 6 39 39 H 1.09005 * 109.50011 * 178.67108 * 23 7 6 40 40 H 1.08993 * 109.58692 * 246.15600 * 24 4 2 41 41 H 1.08997 * 109.59239 * 6.44110 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4653 -2.4448 -0.1207 6 6 1.8757 -3.3520 1.0436 7 6 3.4000 -3.4852 1.0685 8 8 3.7844 -4.3569 2.1338 9 6 4.9818 -4.9829 2.0155 10 6 5.8245 -4.6833 0.9587 11 6 7.0422 -5.3283 0.8396 12 6 7.4348 -6.2750 1.7760 13 6 6.6255 -6.5846 2.8305 14 6 5.3818 -5.9419 2.9734 15 6 4.5385 -6.2567 4.0607 16 1 3.4684 -6.1482 3.9633 17 6 5.0891 -6.7094 5.2650 18 7 4.3319 -7.3149 6.1439 19 14 6.9049 -6.4491 5.6179 20 1 7.6787 -7.6123 5.1146 21 1 7.3693 -5.2137 4.9374 22 1 7.1101 -6.3145 7.0826 23 6 4.0304 -2.1075 1.2844 24 6 3.6449 -1.1862 0.1227 25 1 -0.3634 -1.0230 0.0984 26 1 -0.3634 0.5967 0.8365 27 1 -0.3633 0.4261 -0.9352 28 1 1.7267 -2.9217 -1.0653 29 1 0.3903 -2.2687 -0.0854 30 1 1.4265 -4.3365 0.9133 31 1 1.5330 -2.9167 1.9823 32 1 3.7442 -3.8974 0.1200 33 1 5.5288 -3.9489 0.2242 34 1 7.6934 -5.0932 0.0109 35 1 8.3885 -6.7705 1.6692 36 1 6.9392 -7.3220 3.5545 37 1 3.3759 -7.3847 5.9944 38 1 3.6674 -1.6840 2.2209 39 1 5.1152 -2.2062 1.3257 40 1 4.0839 -1.5606 -0.8020 41 1 4.0085 -0.1774 0.3176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230273165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:09 Heat of formation + Delta-G solvation = -73.734990 kcal Electronic energy + Delta-G solvation = -23144.997513 eV Core-core repulsion = 19795.955642 eV Total energy + Delta-G solvation = -3349.041871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50757 -40.56255 -38.74637 -37.32180 -35.60055 -33.59917 -32.55927 -32.10917 -30.52479 -30.17670 -26.68758 -25.98279 -24.42334 -23.46606 -22.22832 -21.84290 -20.27067 -19.86824 -18.90689 -18.19870 -17.00223 -16.73308 -16.60763 -16.43244 -16.03933 -15.93485 -15.37756 -15.04321 -14.93293 -14.67871 -14.30392 -14.18145 -13.96420 -13.80963 -13.54560 -13.11734 -12.99371 -12.87487 -12.72376 -12.43128 -12.37081 -12.25013 -11.98120 -11.76584 -11.43591 -11.38217 -11.22726 -10.88717 -10.84590 -9.82340 -9.66027 -9.27917 -8.90935 -6.43085 0.76497 0.87893 1.35563 1.53277 1.54727 1.75337 1.95364 2.19014 2.55530 2.66755 3.45527 3.53286 3.62795 3.79356 3.93133 3.96971 4.15379 4.18705 4.26258 4.32667 4.38611 4.43147 4.58347 4.61398 4.66452 4.70214 4.72684 4.83643 4.84345 5.04398 5.10844 5.11053 5.14777 5.26317 5.41015 5.50084 5.64990 5.74985 5.96664 6.10548 6.32915 6.34111 6.50258 6.75649 7.07700 7.11149 8.04516 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.004214 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.992792 B = 6643.698729 C = 7214.881008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.505 3.495 3 O -0.601 6.601 4 N -0.614 5.614 5 C 0.112 3.888 6 C -0.128 4.128 7 C 0.080 3.920 8 O -0.327 6.327 9 C 0.016 3.984 10 C -0.170 4.170 11 C -0.194 4.194 12 C -0.111 4.111 13 C -0.236 4.236 14 C 0.048 3.952 15 C -0.532 4.532 16 H 0.041 0.959 17 C 0.005 3.995 18 N -0.853 5.853 19 Si 1.107 2.893 20 H -0.253 1.253 21 H -0.266 1.266 22 H -0.284 1.284 23 C -0.150 4.150 24 C 0.121 3.879 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.274 0.726 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 8.553 -14.066 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.483 6.483 4 N -0.347 5.347 5 C -0.009 4.009 6 C -0.166 4.166 7 C 0.023 3.977 8 O -0.242 6.242 9 C -0.029 4.029 10 C -0.189 4.189 11 C -0.213 4.213 12 C -0.130 4.130 13 C -0.255 4.255 14 C 0.045 3.955 15 C -0.563 4.563 16 H 0.060 0.940 17 C -0.206 4.206 18 N -0.478 5.478 19 Si 0.929 3.071 20 H -0.179 1.179 21 H -0.190 1.190 22 H -0.211 1.211 23 C -0.188 4.188 24 C -0.002 4.002 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.780 8.717 -12.768 15.916 hybrid contribution -1.470 0.083 -0.594 1.588 sum -5.250 8.800 -13.363 16.839 Atomic orbital electron populations 1.22079 0.88148 1.06565 1.06332 1.21663 0.92462 0.82265 0.73980 1.90684 1.72054 1.32830 1.52740 1.48395 1.07325 1.07151 1.71861 1.22109 0.99393 0.81521 0.97903 1.21981 0.92615 1.01729 1.00314 1.22481 0.96302 0.88703 0.90202 1.86027 1.34459 1.58277 1.45472 1.19354 0.87518 0.96807 0.99185 1.21128 0.96123 1.03450 0.98201 1.20757 0.97507 1.01306 1.01771 1.20713 0.99326 0.98432 0.94480 1.20863 0.97314 1.05002 1.02363 1.17474 0.93509 0.91024 0.93445 1.20331 0.94462 1.42627 0.98846 0.94037 1.28282 1.11074 0.89098 0.92158 1.70623 1.08107 1.30097 1.38950 0.83181 0.69166 0.79209 0.75535 1.17887 1.19043 1.21121 1.22385 1.01718 0.95513 0.99218 1.21455 0.80537 1.00272 0.97967 0.87261 0.88348 0.87036 0.88609 0.84912 0.89171 0.91813 0.90434 0.84819 0.84651 0.85148 0.87457 0.91551 0.92789 0.90564 0.89355 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.08 71.23 0.72 -1.36 16 2 C 0.50 11.40 7.80 87.65 0.68 12.08 16 3 O -0.60 -19.36 16.54 -3.05 -0.05 -19.41 16 4 N -0.61 -12.74 2.97 -818.91 -2.43 -15.17 16 5 C 0.11 1.66 6.35 86.36 0.55 2.21 16 6 C -0.13 -2.97 5.73 30.67 0.18 -2.79 16 7 C 0.08 2.41 2.08 30.62 0.06 2.47 16 8 O -0.33 -14.32 9.13 -89.48 -0.82 -15.13 16 9 C 0.02 0.74 6.62 23.08 0.15 0.89 16 10 C -0.17 -6.51 8.20 22.34 0.18 -6.33 16 11 C -0.19 -7.06 10.04 22.43 0.23 -6.83 16 12 C -0.11 -4.40 9.97 22.00 0.22 -4.18 16 13 C -0.24 -11.15 7.20 22.47 0.16 -10.99 16 14 C 0.05 2.52 5.17 -21.20 -0.11 2.41 16 15 C -0.53 -30.87 9.09 23.40 0.21 -30.66 16 16 H 0.04 2.61 7.86 -2.91 -0.02 2.58 16 17 C 0.01 0.30 5.43 85.25 0.46 0.76 16 18 N -0.85 -49.11 13.66 21.83 0.30 -48.82 16 19 Si 1.11 50.58 24.86 68.60 1.71 52.29 16 20 H -0.25 -10.46 6.43 99.48 0.64 -9.82 16 21 H -0.27 -12.04 6.99 99.48 0.70 -11.34 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.15 -4.29 5.31 30.67 0.16 -4.13 16 24 C 0.12 2.83 6.42 86.36 0.55 3.39 16 25 H 0.11 0.72 5.17 -2.38 -0.01 0.71 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.13 1.06 5.07 -2.39 -0.01 1.05 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.14 6.38 -2.39 -0.02 2.13 16 33 H 0.13 4.16 5.42 -2.91 -0.02 4.15 16 34 H 0.14 3.87 8.06 -2.92 -0.02 3.85 16 35 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.11 5.03 4.25 -2.91 -0.01 5.02 16 37 H 0.27 15.74 8.73 -92.71 -0.81 14.93 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.30 6.83 -2.38 -0.02 2.28 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.15 7.04 -2.39 -0.02 2.13 16 Total: -1.00 -72.95 323.01 4.04 -68.91 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.93 Total: 20.38 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 4.41 Total: -43.05 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -2.14 Total: -63.99 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.87 Total: -34.55 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 1.71 Total: 52.29 kcal Total: -72.95 4.04 -68.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230273165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.823 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds