Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 120.00175 * 2 1 4 4 N 1.34778 * 120.00348 * 179.97438 * 2 1 3 5 5 C 1.46920 * 120.63078 * 0.02562 * 4 2 1 6 6 C 1.53194 * 108.77989 * 126.41061 * 5 4 2 7 7 C 1.53034 * 109.31236 * 54.63441 * 6 5 4 8 8 C 1.53039 * 109.53876 * 298.63615 * 7 6 5 9 9 H 1.09004 * 109.50011 * 301.41351 * 8 7 6 10 10 O 1.42902 * 109.49989 * 181.31857 * 8 7 6 11 11 C 1.35641 * 117.00205 * 156.22979 * 10 8 7 12 12 C 1.38450 * 120.26539 * 5.28522 * 11 10 8 13 13 C 1.38301 * 120.04884 * 180.02562 * 12 11 10 14 14 C 1.38814 * 120.59575 * 0.02562 * 13 12 11 15 15 C 1.36492 * 120.53809 * 0.02562 * 14 13 12 16 16 C 1.40730 * 119.92531 * 359.68023 * 15 14 13 17 17 C 1.41156 * 120.28758 * 180.31645 * 16 15 14 18 18 H 1.07998 * 119.99710 * 206.50555 * 17 16 15 19 19 C 1.39936 * 119.99845 * 26.51543 * 17 16 15 20 20 N 1.30862 * 119.99918 * 12.86566 * 19 17 16 21 21 Si 1.86793 * 119.99813 * 192.86308 * 19 17 16 22 22 H 1.48501 * 109.47653 * 59.99984 * 21 19 17 23 23 H 1.48502 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47269 * 299.99897 * 21 19 17 25 25 C 1.46928 * 120.62994 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.46909 * 240.00027 * 1 2 3 27 27 H 1.08993 * 109.47458 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47050 * 120.00295 * 1 2 3 29 29 H 1.09007 * 109.58662 * 6.62075 * 5 4 2 30 30 H 1.09007 * 109.58819 * 246.19810 * 5 4 2 31 31 H 1.09003 * 109.49658 * 294.67852 * 6 5 4 32 32 H 1.09004 * 109.52268 * 174.60327 * 6 5 4 33 33 H 1.09005 * 109.46124 * 58.65560 * 7 6 5 34 34 H 1.09000 * 109.46219 * 178.61600 * 7 6 5 35 35 H 1.07998 * 119.97362 * 359.97438 * 12 11 10 36 36 H 1.08002 * 119.69970 * 179.97438 * 13 12 11 37 37 H 1.08005 * 119.73172 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.03946 * 180.02562 * 15 14 13 39 39 H 0.97003 * 119.99760 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.59141 * 353.37595 * 25 4 2 41 41 H 1.09005 * 109.58571 * 113.80543 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4605 -2.4476 0.0005 6 6 1.9694 -3.2998 -1.1663 7 6 3.4906 -3.4347 -1.0688 8 6 4.1345 -2.0497 -1.1654 9 1 3.8511 -1.5816 -2.1082 10 8 5.5563 -2.1794 -1.1052 11 6 6.2898 -1.1795 -1.6548 12 6 5.6662 -0.0439 -2.1431 13 6 6.4184 0.9726 -2.7032 14 6 7.8002 0.8675 -2.7828 15 6 8.4398 -0.2417 -2.3099 16 6 7.6968 -1.2868 -1.7300 17 6 8.3510 -2.4344 -1.2325 18 1 7.8275 -3.3780 -1.1889 19 6 9.6776 -2.3493 -0.7955 20 7 10.2312 -1.1783 -0.6089 21 14 10.6583 -3.9072 -0.4786 22 1 10.7431 -4.7021 -1.7301 23 1 12.0263 -3.5477 -0.0263 24 1 9.9849 -4.7106 0.5734 25 6 3.6501 -1.1832 0.0011 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 0.3922 -2.2658 -0.1183 30 1 1.6421 -2.9691 0.9403 31 1 1.7062 -2.8201 -2.1091 32 1 1.5128 -4.2886 -1.1215 33 1 3.7543 -3.8920 -0.1151 34 1 3.8527 -4.0611 -1.8841 35 1 4.5916 0.0478 -2.0874 36 1 5.9261 1.8558 -3.0827 37 1 8.3740 1.6700 -3.2225 38 1 9.5153 -0.3148 -2.3756 39 1 11.1507 -1.1194 -0.3057 40 1 4.0268 -0.1673 -0.1174 41 1 4.0106 -1.6015 0.9409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230273237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = -56.476200 kcal Electronic energy + Delta-G solvation = -23334.144322 eV Core-core repulsion = 19985.850848 eV Total energy + Delta-G solvation = -3348.293474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26850 -38.74915 -37.15460 -35.76230 -33.54066 -32.64878 -31.14283 -29.73843 -29.06698 -28.32288 -25.20694 -25.07912 -23.19298 -21.67942 -20.55133 -20.01274 -19.00933 -17.43350 -17.16487 -16.48324 -16.01730 -15.58303 -15.20321 -14.69230 -14.56256 -14.11114 -13.89772 -13.53252 -13.26754 -13.20048 -12.90276 -12.66376 -12.57699 -12.34542 -12.13453 -11.82323 -11.54362 -11.27838 -11.16279 -11.00860 -10.92244 -10.85404 -10.47464 -10.31850 -10.00266 -9.78913 -9.64591 -9.35701 -9.13785 -8.61583 -7.39554 -6.95556 -6.60669 -4.20598 2.62133 2.82269 2.93700 3.04372 3.11746 3.15143 3.26151 4.00932 4.13907 4.49117 4.71898 4.75262 4.78875 4.96327 5.05622 5.11551 5.19651 5.27188 5.36967 5.52331 5.64247 5.69959 5.72130 5.77666 5.94114 6.04129 6.15097 6.24614 6.34075 6.39977 6.44081 6.57087 7.01338 7.17378 7.36341 7.39475 7.44574 7.80073 7.83713 8.13334 8.17516 8.27353 8.46161 8.76192 8.92548 9.12246 10.30515 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004738 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.483444 B = 5907.989756 C = 6824.041425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.541 6.541 4 N -0.610 5.610 5 C 0.104 3.896 6 C -0.131 4.131 7 C -0.116 4.116 8 C 0.078 3.922 9 H 0.066 0.934 10 O -0.296 6.296 11 C 0.007 3.993 12 C -0.175 4.175 13 C -0.209 4.209 14 C -0.128 4.128 15 C -0.142 4.142 16 C 0.098 3.902 17 C -0.446 4.446 18 H 0.080 0.920 19 C 0.071 3.929 20 N -0.803 5.803 21 Si 0.911 3.089 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.266 1.266 25 C 0.086 3.914 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.279 0.721 40 H 0.101 0.899 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.950 -4.938 0.906 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.418 6.418 4 N -0.346 5.346 5 C -0.019 4.019 6 C -0.169 4.169 7 C -0.153 4.153 8 C 0.020 3.980 9 H 0.083 0.917 10 O -0.210 6.210 11 C -0.037 4.037 12 C -0.194 4.194 13 C -0.229 4.229 14 C -0.146 4.146 15 C -0.162 4.162 16 C 0.095 3.905 17 C -0.476 4.476 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.430 5.430 21 Si 0.736 3.264 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.037 4.037 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.310 -4.441 1.092 15.978 hybrid contribution 0.308 -0.459 0.159 0.575 sum -15.002 -4.900 1.251 15.831 Atomic orbital electron populations 1.21929 0.91981 1.05299 1.03893 1.20828 0.90550 0.83169 0.75904 1.90757 1.70658 1.30953 1.49426 1.48138 1.06997 1.05951 1.73504 1.21818 0.96538 0.84270 0.99234 1.21902 0.95920 1.00341 0.98764 1.21540 0.93713 0.96326 1.03753 1.22329 0.82297 0.95706 0.97710 0.91657 1.86017 1.14698 1.43883 1.76371 1.19206 0.91584 0.88582 1.04334 1.20662 0.97643 0.95541 1.05539 1.20165 0.93878 0.99063 1.09779 1.20411 0.93900 0.98065 1.02272 1.20966 1.00147 0.94197 1.00883 1.17056 0.87026 0.94314 0.92066 1.19361 0.95937 0.96325 1.36001 0.90219 1.25877 0.97921 0.97265 0.93397 1.69810 1.14197 1.24853 1.34153 0.86327 0.78413 0.82066 0.79614 1.18978 1.20477 1.19113 1.22264 0.78407 1.03470 0.99544 0.89532 0.89104 0.89479 0.89545 0.91003 0.91311 0.89984 0.90774 0.90620 0.88623 0.89400 0.89348 0.85517 0.91016 0.88051 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.67 36.00 0.31 -1.13 16 2 C 0.51 7.16 7.81 -10.99 -0.09 7.07 16 3 O -0.54 -10.44 16.50 5.55 0.09 -10.35 16 4 N -0.61 -8.14 2.97 -172.78 -0.51 -8.65 16 5 C 0.10 0.93 6.34 -3.71 -0.02 0.90 16 6 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 7 C -0.12 -1.53 5.54 -26.69 -0.15 -1.68 16 8 C 0.08 1.37 2.26 -26.62 -0.06 1.31 16 9 H 0.07 1.19 6.39 -51.93 -0.33 0.86 16 10 O -0.30 -6.73 9.12 -18.62 -0.17 -6.90 16 11 C 0.01 0.18 6.63 -38.33 -0.25 -0.08 16 12 C -0.17 -4.19 8.27 -39.48 -0.33 -4.52 16 13 C -0.21 -5.01 10.04 -39.35 -0.39 -5.40 16 14 C -0.13 -3.15 9.97 -40.00 -0.40 -3.55 16 15 C -0.14 -3.81 8.62 -39.27 -0.34 -4.15 16 16 C 0.10 2.70 5.58 -106.68 -0.60 2.10 16 17 C -0.45 -12.19 8.72 -37.84 -0.33 -12.52 16 18 H 0.08 2.14 7.65 -52.49 -0.40 1.74 16 19 C 0.07 1.83 5.23 -17.33 -0.09 1.74 16 20 N -0.80 -21.27 10.80 55.55 0.60 -20.67 16 21 Si 0.91 19.23 29.58 -169.99 -5.03 14.21 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C 0.09 1.46 5.70 -3.72 -0.02 1.44 16 26 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 27 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.09 0.55 7.69 -51.93 -0.40 0.15 16 29 H 0.09 0.51 5.94 -51.92 -0.31 0.20 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 2.13 5.33 -52.49 -0.28 1.85 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.13 3.46 6.12 -52.49 -0.32 3.14 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.10 2.08 5.63 -51.93 -0.29 1.78 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -32.09 329.81 -8.65 -40.74 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.68 Total: 6.48 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.92 Total: -19.83 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.09 Total: -29.32 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.08 Total: -17.25 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.09 -8.65 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230273237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.732 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds