Wall clock time and date at job start Tue Mar 31 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 120.00175 * 2 1 4 4 N 1.34778 * 120.00348 * 179.97438 * 2 1 3 5 5 C 1.46920 * 120.63078 * 0.02562 * 4 2 1 6 6 C 1.53194 * 108.77989 * 126.41061 * 5 4 2 7 7 C 1.53034 * 109.31236 * 54.63441 * 6 5 4 8 8 C 1.53039 * 109.53876 * 298.63615 * 7 6 5 9 9 H 1.09004 * 109.50011 * 301.41351 * 8 7 6 10 10 O 1.42902 * 109.49989 * 181.31857 * 8 7 6 11 11 C 1.35641 * 117.00205 * 156.22979 * 10 8 7 12 12 C 1.38450 * 120.26539 * 5.28522 * 11 10 8 13 13 C 1.38301 * 120.04884 * 180.02562 * 12 11 10 14 14 C 1.38814 * 120.59575 * 0.02562 * 13 12 11 15 15 C 1.36492 * 120.53809 * 0.02562 * 14 13 12 16 16 C 1.40730 * 119.92531 * 359.68023 * 15 14 13 17 17 C 1.41156 * 120.28758 * 180.31645 * 16 15 14 18 18 H 1.07998 * 119.99710 * 206.50555 * 17 16 15 19 19 C 1.39936 * 119.99845 * 26.51543 * 17 16 15 20 20 N 1.30862 * 119.99918 * 12.86566 * 19 17 16 21 21 Si 1.86793 * 119.99813 * 192.86308 * 19 17 16 22 22 H 1.48501 * 109.47653 * 59.99984 * 21 19 17 23 23 H 1.48502 * 109.47302 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47269 * 299.99897 * 21 19 17 25 25 C 1.46928 * 120.62994 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.46909 * 240.00027 * 1 2 3 27 27 H 1.08993 * 109.47458 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47050 * 120.00295 * 1 2 3 29 29 H 1.09007 * 109.58662 * 6.62075 * 5 4 2 30 30 H 1.09007 * 109.58819 * 246.19810 * 5 4 2 31 31 H 1.09003 * 109.49658 * 294.67852 * 6 5 4 32 32 H 1.09004 * 109.52268 * 174.60327 * 6 5 4 33 33 H 1.09005 * 109.46124 * 58.65560 * 7 6 5 34 34 H 1.09000 * 109.46219 * 178.61600 * 7 6 5 35 35 H 1.07998 * 119.97362 * 359.97438 * 12 11 10 36 36 H 1.08002 * 119.69970 * 179.97438 * 13 12 11 37 37 H 1.08005 * 119.73172 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.03946 * 180.02562 * 15 14 13 39 39 H 0.97003 * 119.99760 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.59141 * 353.37595 * 25 4 2 41 41 H 1.09005 * 109.58571 * 113.80543 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4605 -2.4476 0.0005 6 6 1.9694 -3.2998 -1.1663 7 6 3.4906 -3.4347 -1.0688 8 6 4.1345 -2.0497 -1.1654 9 1 3.8511 -1.5816 -2.1082 10 8 5.5563 -2.1794 -1.1052 11 6 6.2898 -1.1795 -1.6548 12 6 5.6662 -0.0439 -2.1431 13 6 6.4184 0.9726 -2.7032 14 6 7.8002 0.8675 -2.7828 15 6 8.4398 -0.2417 -2.3099 16 6 7.6968 -1.2868 -1.7300 17 6 8.3510 -2.4344 -1.2325 18 1 7.8275 -3.3780 -1.1889 19 6 9.6776 -2.3493 -0.7955 20 7 10.2312 -1.1783 -0.6089 21 14 10.6583 -3.9072 -0.4786 22 1 10.7431 -4.7021 -1.7301 23 1 12.0263 -3.5477 -0.0263 24 1 9.9849 -4.7106 0.5734 25 6 3.6501 -1.1832 0.0011 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 0.3922 -2.2658 -0.1183 30 1 1.6421 -2.9691 0.9403 31 1 1.7062 -2.8201 -2.1091 32 1 1.5128 -4.2886 -1.1215 33 1 3.7543 -3.8920 -0.1151 34 1 3.8527 -4.0611 -1.8841 35 1 4.5916 0.0478 -2.0874 36 1 5.9261 1.8558 -3.0827 37 1 8.3740 1.6700 -3.2225 38 1 9.5153 -0.3148 -2.3756 39 1 11.1507 -1.1194 -0.3057 40 1 4.0268 -0.1673 -0.1174 41 1 4.0106 -1.6015 0.9409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230273237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:36 Heat of formation + Delta-G solvation = -76.132911 kcal Electronic energy + Delta-G solvation = -23334.996701 eV Core-core repulsion = 19985.850848 eV Total energy + Delta-G solvation = -3349.145853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50865 -40.36402 -38.62948 -37.31844 -35.51012 -33.77651 -32.31698 -31.45547 -30.61841 -29.77702 -27.09079 -26.23548 -24.47076 -23.18704 -22.34265 -21.55689 -20.07919 -19.34644 -18.48436 -18.04871 -17.19105 -17.12701 -16.59080 -16.13676 -15.99259 -15.83768 -15.21959 -14.99589 -14.62095 -14.42809 -14.29913 -14.10060 -13.85907 -13.51287 -13.30264 -13.18458 -13.01840 -12.95325 -12.74423 -12.57117 -12.20736 -12.08488 -12.00616 -11.77115 -11.65914 -11.51719 -11.24872 -11.06753 -10.90249 -9.76155 -9.41407 -8.90479 -8.54487 -6.25639 0.90313 1.04507 1.38272 1.50278 1.52892 1.56755 1.88277 2.23300 2.68134 2.75166 3.55097 3.63294 3.76856 3.90002 3.91180 4.01742 4.09316 4.26760 4.40364 4.45038 4.48866 4.56964 4.60358 4.65802 4.69682 4.76092 4.86437 4.98058 5.03276 5.08338 5.16383 5.18541 5.28919 5.37236 5.41326 5.48148 5.82985 5.87354 6.12225 6.27176 6.39838 6.49613 6.77060 6.91124 7.11585 7.18360 8.38703 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004738 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.483444 B = 5907.989756 C = 6824.041425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.495 3.505 3 O -0.607 6.607 4 N -0.607 5.607 5 C 0.097 3.903 6 C -0.122 4.122 7 C -0.112 4.112 8 C 0.074 3.926 9 H 0.054 0.946 10 O -0.315 6.315 11 C 0.003 3.997 12 C -0.179 4.179 13 C -0.211 4.211 14 C -0.133 4.133 15 C -0.163 4.163 16 C 0.061 3.939 17 C -0.479 4.479 18 H 0.072 0.928 19 C 0.030 3.970 20 N -0.834 5.834 21 Si 0.986 3.014 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.262 1.262 25 C 0.094 3.906 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.287 0.713 40 H 0.058 0.942 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.525 -6.752 1.131 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.287 3.713 3 O -0.489 6.489 4 N -0.342 5.342 5 C -0.023 4.023 6 C -0.160 4.160 7 C -0.150 4.150 8 C 0.016 3.984 9 H 0.072 0.928 10 O -0.230 6.230 11 C -0.041 4.041 12 C -0.198 4.198 13 C -0.230 4.230 14 C -0.152 4.152 15 C -0.183 4.183 16 C 0.059 3.941 17 C -0.509 4.509 18 H 0.090 0.910 19 C -0.183 4.183 20 N -0.461 5.461 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.030 4.030 26 H 0.138 0.862 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.935 -6.283 1.312 19.048 hybrid contribution 0.994 0.150 0.096 1.010 sum -16.940 -6.132 1.408 18.071 Atomic orbital electron populations 1.21966 0.86727 1.06278 1.06829 1.22024 0.92946 0.82161 0.74217 1.90728 1.72375 1.33329 1.52449 1.48302 1.05212 1.07951 1.72725 1.22254 0.98324 0.81927 0.99825 1.21934 0.92389 1.02657 0.98996 1.21624 0.96587 0.93054 1.03748 1.22694 0.79660 0.98782 0.97228 0.92773 1.85973 1.17602 1.43311 1.76070 1.19329 0.91573 0.89442 1.03757 1.20857 0.98382 0.95288 1.05237 1.20537 0.93842 0.99751 1.08898 1.20672 0.94496 0.98083 1.01933 1.20966 0.99739 0.95329 1.02260 1.17467 0.88435 0.95128 0.93108 1.19519 0.97403 0.96104 1.37882 0.90954 1.26753 0.98275 1.00798 0.92456 1.69870 1.14850 1.26951 1.34445 0.85206 0.77036 0.77509 0.79630 1.18315 1.19086 1.18648 1.21858 0.81562 1.00663 0.98960 0.86238 0.89359 0.86387 0.85166 0.89541 0.91241 0.86055 0.90555 0.90987 0.87407 0.86780 0.86790 0.86774 0.90252 0.92307 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.67 71.24 0.62 -1.46 16 2 C 0.49 13.41 7.81 87.66 0.68 14.10 16 3 O -0.61 -24.15 16.50 -3.05 -0.05 -24.20 16 4 N -0.61 -15.33 2.97 -818.93 -2.43 -17.76 16 5 C 0.10 1.32 6.34 86.36 0.55 1.87 16 6 C -0.12 -1.79 6.08 30.67 0.19 -1.60 16 7 C -0.11 -2.82 5.54 30.62 0.17 -2.65 16 8 C 0.07 2.65 2.26 30.66 0.07 2.72 16 9 H 0.05 2.03 6.39 -2.38 -0.02 2.02 16 10 O -0.32 -15.01 9.12 -89.55 -0.82 -15.83 16 11 C 0.00 0.18 6.63 23.08 0.15 0.34 16 12 C -0.18 -8.85 8.27 22.34 0.18 -8.66 16 13 C -0.21 -10.21 10.04 22.42 0.23 -9.98 16 14 C -0.13 -6.69 9.97 22.00 0.22 -6.47 16 15 C -0.16 -9.12 8.62 22.47 0.19 -8.93 16 16 C 0.06 3.53 5.58 -21.20 -0.12 3.41 16 17 C -0.48 -27.36 8.72 23.40 0.20 -27.15 16 18 H 0.07 4.07 7.65 -2.91 -0.02 4.05 16 19 C 0.03 1.59 5.23 85.25 0.45 2.04 16 20 N -0.83 -45.51 10.80 21.83 0.24 -45.28 16 21 Si 0.99 39.94 29.58 68.60 2.03 41.97 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 C 0.09 3.29 5.70 86.36 0.49 3.78 16 26 H 0.12 0.82 7.94 -2.39 -0.02 0.80 16 27 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 28 H 0.12 0.86 7.69 -2.39 -0.02 0.84 16 29 H 0.13 0.71 5.94 -2.38 -0.01 0.70 16 30 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.11 4.98 5.33 -2.91 -0.02 4.97 16 36 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 38 H 0.11 6.55 6.12 -2.91 -0.02 6.53 16 39 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 40 H 0.06 2.57 5.63 -2.39 -0.01 2.55 16 41 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -76.57 329.81 4.27 -72.30 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 1.03 Total: 27.46 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 4.27 Total: -38.66 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -2.20 Total: -63.04 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.87 Total: -40.03 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -76.57 4.27 -72.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230273237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.837 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds