Wall clock time and date at job start Tue Mar 31 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46847 * 110.99906 * 2 1 4 4 C 1.53034 * 109.52423 * 185.84168 * 3 2 1 5 5 C 1.53126 * 109.27457 * 300.81622 * 4 3 2 6 6 C 1.53120 * 109.15957 * 57.65812 * 5 4 3 7 7 H 1.09000 * 109.53594 * 62.30099 * 6 5 4 8 8 O 1.42900 * 109.50254 * 182.40570 * 6 5 4 9 9 C 1.35663 * 116.99849 * 204.62850 * 8 6 5 10 10 C 1.39163 * 119.90383 * 174.61657 * 9 8 6 11 11 C 1.37593 * 120.09478 * 179.97438 * 10 9 8 12 12 C 1.39947 * 119.90087 * 0.02562 * 11 10 9 13 13 C 1.47571 * 120.09293 * 179.97438 * 12 11 10 14 14 O 1.21829 * 119.99847 * 0.02562 * 13 12 11 15 15 C 1.41759 * 120.00549 * 179.97438 * 13 12 11 16 16 H 1.08007 * 119.99433 * 0.02562 * 15 13 12 17 17 C 1.40347 * 120.00567 * 179.72379 * 15 13 12 18 18 N 1.30533 * 119.99483 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00005 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46955 * 90.00558 * 19 17 15 21 21 H 1.48503 * 109.46860 * 209.99610 * 19 17 15 22 22 H 1.48496 * 109.47228 * 330.00054 * 19 17 15 23 23 C 1.39949 * 119.81851 * 0.25469 * 12 11 10 24 24 C 1.37599 * 119.90106 * 359.44402 * 23 12 11 25 25 C 1.46846 * 110.99823 * 124.20338 * 2 1 3 26 26 H 1.09003 * 109.47319 * 295.79490 * 1 2 3 27 27 H 1.09004 * 109.47302 * 55.79152 * 1 2 3 28 28 H 1.09003 * 109.47180 * 175.78980 * 1 2 3 29 29 H 1.09007 * 109.45748 * 305.85254 * 3 2 1 30 30 H 1.08994 * 109.46228 * 65.81816 * 3 2 1 31 31 H 1.09000 * 109.50485 * 60.75692 * 4 3 2 32 32 H 1.08998 * 109.50438 * 180.84103 * 4 3 2 33 33 H 1.08995 * 109.52088 * 297.75047 * 5 4 3 34 34 H 1.08995 * 109.52194 * 177.56002 * 5 4 3 35 35 H 1.08003 * 119.95195 * 0.02562 * 10 9 8 36 36 H 1.07996 * 120.05250 * 180.02562 * 11 10 9 37 37 H 0.97002 * 119.99603 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.05255 * 179.72632 * 23 12 11 39 39 H 1.07997 * 119.95059 * 180.30108 * 24 23 12 40 40 H 1.09009 * 109.46153 * 54.14940 * 25 2 1 41 41 H 1.08994 * 109.46428 * 294.18170 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5371 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7813 -1.3841 0.0957 8 8 4.0317 -1.6039 2.1352 9 6 4.0381 -2.9567 2.0328 10 6 4.6266 -3.7254 3.0325 11 6 4.6348 -5.0977 2.9329 12 6 4.0507 -5.7202 1.8239 13 6 4.0576 -7.1916 1.7125 14 8 4.5719 -7.8663 2.5869 15 6 3.4649 -7.8203 0.5886 16 1 3.0086 -7.2221 -0.1863 17 6 3.4766 -9.2195 0.4798 18 7 4.0329 -9.9420 1.4138 19 14 2.6962 -10.0476 -1.0015 20 1 3.7121 -10.2041 -2.0733 21 1 2.1824 -11.3841 -0.6078 22 1 1.5740 -9.2132 -1.5010 23 6 3.4652 -4.9431 0.8180 24 6 3.4558 -3.5716 0.9286 25 6 1.9952 -0.7706 1.1338 26 1 -0.3634 0.4472 0.9253 27 1 -0.3634 0.5778 -0.8499 28 1 -0.3634 -1.0249 -0.0754 29 1 1.5633 1.9257 -0.8331 30 1 1.7324 1.8608 0.9375 31 1 3.7813 0.8568 -1.0906 32 1 3.9097 2.3513 -0.1318 33 1 3.8886 1.0356 1.9560 34 1 5.1996 0.4715 0.8906 35 1 5.0767 -3.2441 3.8882 36 1 5.0913 -5.6935 3.7093 37 1 4.0413 -10.9091 1.3385 38 1 3.0172 -5.4194 -0.0416 39 1 2.9999 -2.9714 0.1551 40 1 1.5634 -1.7715 1.1244 41 1 1.7323 -0.2707 2.0660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233518254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:58 Heat of formation + Delta-G solvation = -54.519650 kcal Electronic energy + Delta-G solvation = -22521.343799 eV Core-core repulsion = 19173.135167 eV Total energy + Delta-G solvation = -3348.208632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28248 -38.60472 -37.26039 -35.63068 -33.45284 -32.67398 -31.02358 -30.01523 -29.27583 -27.03017 -26.58367 -23.70838 -23.19591 -22.30770 -21.65801 -20.07149 -19.44403 -17.87193 -16.62614 -16.35951 -15.80503 -15.49881 -15.22738 -14.97160 -14.31991 -14.24321 -14.04369 -13.64919 -13.45821 -13.05317 -12.97107 -12.83009 -12.59481 -12.40584 -12.32750 -11.82872 -11.59226 -11.55429 -11.30645 -11.17627 -11.10373 -10.86589 -10.78471 -10.50974 -10.34608 -10.19304 -9.88999 -8.96875 -8.64588 -8.38762 -7.46916 -7.44107 -6.29678 -4.89827 1.87500 2.03600 3.05327 3.12975 3.16310 3.18798 3.79887 4.00958 4.05564 4.50132 4.55784 4.66474 4.70027 4.83049 4.99297 5.14580 5.17947 5.23488 5.34636 5.40680 5.42151 5.47937 5.59592 5.61217 5.64370 5.70303 5.82904 5.89528 5.92171 6.01371 6.14561 6.16892 6.33420 6.66950 6.71935 6.75600 6.88085 7.07555 7.25651 7.39075 7.41752 7.87611 8.04342 8.79774 8.85422 10.32046 10.54294 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.003560 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.254922 B = 7863.679417 C = 8769.110042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.051 3.949 4 C -0.114 4.114 5 C -0.116 4.116 6 C 0.090 3.910 7 H 0.084 0.916 8 O -0.314 6.314 9 C 0.110 3.890 10 C -0.163 4.163 11 C -0.057 4.057 12 C -0.137 4.137 13 C 0.389 3.611 14 O -0.544 6.544 15 C -0.518 4.518 16 H 0.074 0.926 17 C 0.079 3.921 18 N -0.735 5.735 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.056 4.056 24 C -0.221 4.221 25 C 0.030 3.970 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.274 0.726 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 20.623 -4.239 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.077 4.077 4 C -0.152 4.152 5 C -0.154 4.154 6 C 0.033 3.967 7 H 0.101 0.899 8 O -0.228 6.228 9 C 0.066 3.934 10 C -0.182 4.182 11 C -0.075 4.075 12 C -0.138 4.138 13 C 0.285 3.715 14 O -0.434 6.434 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.144 4.144 18 N -0.364 5.364 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.074 4.074 24 C -0.240 4.240 25 C -0.098 4.098 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.054 20.054 -3.976 20.843 hybrid contribution -0.889 0.053 -0.243 0.923 sum -4.944 20.107 -4.219 21.131 Atomic orbital electron populations 1.22364 0.86661 1.02761 1.00445 1.61843 1.08057 1.13576 1.43051 1.22174 0.95640 0.89249 1.00657 1.21553 0.94368 1.00277 0.98958 1.21628 1.00932 0.93412 0.99408 1.22271 0.92290 0.92472 0.89686 0.89860 1.85986 1.79291 1.16077 1.41407 1.19123 0.97364 0.81491 0.95426 1.20291 1.05332 0.93232 0.99350 1.21214 0.96121 0.92516 0.97691 1.21816 0.98227 0.99833 0.93918 1.18070 0.81733 0.83905 0.87764 1.90502 1.45605 1.65054 1.42234 1.20937 1.35007 0.91900 1.07040 0.90824 1.26011 0.93799 0.97882 0.96695 1.69965 1.29843 1.06501 1.30105 0.86382 0.80123 0.78894 0.81620 1.19379 1.20157 1.18502 1.21362 0.95840 0.91889 0.98350 1.21233 1.07331 0.96175 0.99228 1.22660 0.95533 0.99554 0.92016 0.95603 0.91171 0.90937 0.90429 0.94736 0.90614 0.90600 0.91210 0.90637 0.86143 0.85087 0.91512 0.85100 0.85808 0.89594 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.59 60.06 0.58 0.80 16 2 N -0.54 -5.51 4.91 -242.95 -1.19 -6.70 16 3 C 0.05 0.42 5.46 -3.84 -0.02 0.40 16 4 C -0.11 -0.90 6.09 -26.65 -0.16 -1.07 16 5 C -0.12 -1.15 5.65 -26.60 -0.15 -1.30 16 6 C 0.09 1.12 2.27 -26.65 -0.06 1.06 16 7 H 0.08 1.09 6.31 -51.93 -0.33 0.76 16 8 O -0.31 -4.87 9.79 -18.69 -0.18 -5.05 16 9 C 0.11 1.94 6.62 -38.90 -0.26 1.69 16 10 C -0.16 -3.04 9.97 -39.47 -0.39 -3.43 16 11 C -0.06 -1.23 9.59 -39.18 -0.38 -1.61 16 12 C -0.14 -3.26 5.89 -104.81 -0.62 -3.88 16 13 C 0.39 11.14 6.91 -34.43 -0.24 10.90 16 14 O -0.54 -17.46 14.89 5.07 0.08 -17.38 16 15 C -0.52 -14.29 8.86 -37.44 -0.33 -14.62 16 16 H 0.07 1.84 6.01 -52.48 -0.32 1.52 16 17 C 0.08 2.14 5.50 -17.31 -0.10 2.05 16 18 N -0.74 -21.27 11.73 55.57 0.65 -20.62 16 19 Si 0.91 19.27 29.56 -169.99 -5.03 14.25 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 23 C -0.06 -1.15 9.43 -39.17 -0.37 -1.52 16 24 C -0.22 -3.90 8.22 -39.47 -0.32 -4.22 16 25 C 0.03 0.36 4.72 -3.83 -0.02 0.34 16 26 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.54 8.09 -51.92 -0.42 0.12 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.12 1.96 8.06 -52.48 -0.42 1.53 16 36 H 0.13 2.87 7.65 -52.49 -0.40 2.47 16 37 H 0.27 7.08 8.29 -40.82 -0.34 6.75 16 38 H 0.13 2.58 6.19 -52.49 -0.33 2.26 16 39 H 0.12 1.89 5.39 -52.49 -0.28 1.60 16 40 H 0.09 1.12 6.86 -51.92 -0.36 0.76 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -32.48 333.06 -9.28 -41.76 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.79 Total: 3.14 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.84 Total: -14.41 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: -0.54 Total: -27.32 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.11 Total: -22.43 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.48 -9.28 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.755 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds