Wall clock time and date at job start Tue Mar 31 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46847 * 110.99906 * 2 1 4 4 C 1.53034 * 109.52423 * 185.84168 * 3 2 1 5 5 C 1.53126 * 109.27457 * 300.81622 * 4 3 2 6 6 C 1.53120 * 109.15957 * 57.65812 * 5 4 3 7 7 H 1.09000 * 109.53594 * 62.30099 * 6 5 4 8 8 O 1.42900 * 109.50254 * 182.40570 * 6 5 4 9 9 C 1.35663 * 116.99849 * 204.62850 * 8 6 5 10 10 C 1.39163 * 119.90383 * 174.61657 * 9 8 6 11 11 C 1.37593 * 120.09478 * 179.97438 * 10 9 8 12 12 C 1.39947 * 119.90087 * 0.02562 * 11 10 9 13 13 C 1.47571 * 120.09293 * 179.97438 * 12 11 10 14 14 O 1.21829 * 119.99847 * 0.02562 * 13 12 11 15 15 C 1.41759 * 120.00549 * 179.97438 * 13 12 11 16 16 H 1.08007 * 119.99433 * 0.02562 * 15 13 12 17 17 C 1.40347 * 120.00567 * 179.72379 * 15 13 12 18 18 N 1.30533 * 119.99483 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00005 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46955 * 90.00558 * 19 17 15 21 21 H 1.48503 * 109.46860 * 209.99610 * 19 17 15 22 22 H 1.48496 * 109.47228 * 330.00054 * 19 17 15 23 23 C 1.39949 * 119.81851 * 0.25469 * 12 11 10 24 24 C 1.37599 * 119.90106 * 359.44402 * 23 12 11 25 25 C 1.46846 * 110.99823 * 124.20338 * 2 1 3 26 26 H 1.09003 * 109.47319 * 295.79490 * 1 2 3 27 27 H 1.09004 * 109.47302 * 55.79152 * 1 2 3 28 28 H 1.09003 * 109.47180 * 175.78980 * 1 2 3 29 29 H 1.09007 * 109.45748 * 305.85254 * 3 2 1 30 30 H 1.08994 * 109.46228 * 65.81816 * 3 2 1 31 31 H 1.09000 * 109.50485 * 60.75692 * 4 3 2 32 32 H 1.08998 * 109.50438 * 180.84103 * 4 3 2 33 33 H 1.08995 * 109.52088 * 297.75047 * 5 4 3 34 34 H 1.08995 * 109.52194 * 177.56002 * 5 4 3 35 35 H 1.08003 * 119.95195 * 0.02562 * 10 9 8 36 36 H 1.07996 * 120.05250 * 180.02562 * 11 10 9 37 37 H 0.97002 * 119.99603 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.05255 * 179.72632 * 23 12 11 39 39 H 1.07997 * 119.95059 * 180.30108 * 24 23 12 40 40 H 1.09009 * 109.46153 * 54.14940 * 25 2 1 41 41 H 1.08994 * 109.46428 * 294.18170 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5371 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7813 -1.3841 0.0957 8 8 4.0317 -1.6039 2.1352 9 6 4.0381 -2.9567 2.0328 10 6 4.6266 -3.7254 3.0325 11 6 4.6348 -5.0977 2.9329 12 6 4.0507 -5.7202 1.8239 13 6 4.0576 -7.1916 1.7125 14 8 4.5719 -7.8663 2.5869 15 6 3.4649 -7.8203 0.5886 16 1 3.0086 -7.2221 -0.1863 17 6 3.4766 -9.2195 0.4798 18 7 4.0329 -9.9420 1.4138 19 14 2.6962 -10.0476 -1.0015 20 1 3.7121 -10.2041 -2.0733 21 1 2.1824 -11.3841 -0.6078 22 1 1.5740 -9.2132 -1.5010 23 6 3.4652 -4.9431 0.8180 24 6 3.4558 -3.5716 0.9286 25 6 1.9952 -0.7706 1.1338 26 1 -0.3634 0.4472 0.9253 27 1 -0.3634 0.5778 -0.8499 28 1 -0.3634 -1.0249 -0.0754 29 1 1.5633 1.9257 -0.8331 30 1 1.7324 1.8608 0.9375 31 1 3.7813 0.8568 -1.0906 32 1 3.9097 2.3513 -0.1318 33 1 3.8886 1.0356 1.9560 34 1 5.1996 0.4715 0.8906 35 1 5.0767 -3.2441 3.8882 36 1 5.0913 -5.6935 3.7093 37 1 4.0413 -10.9091 1.3385 38 1 3.0172 -5.4194 -0.0416 39 1 2.9999 -2.9714 0.1551 40 1 1.5634 -1.7715 1.1244 41 1 1.7323 -0.2707 2.0660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233518254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:57 Heat of formation + Delta-G solvation = -75.550263 kcal Electronic energy + Delta-G solvation = -22522.255755 eV Core-core repulsion = 19173.135167 eV Total energy + Delta-G solvation = -3349.120587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49545 -39.86819 -38.79813 -37.37770 -34.78782 -34.23198 -32.38772 -31.28823 -30.83058 -28.58897 -27.71169 -24.95206 -24.14408 -23.73591 -22.97869 -21.44440 -20.72915 -19.21048 -18.60351 -17.60716 -17.18637 -16.77442 -16.32695 -15.95291 -15.78963 -15.55045 -15.29132 -14.87021 -14.74184 -14.54833 -14.29569 -14.19905 -13.93540 -13.64356 -13.32992 -13.22404 -13.09324 -12.95711 -12.67143 -12.56816 -12.36998 -12.05843 -12.02208 -11.89035 -11.69813 -11.45432 -11.26664 -10.98733 -9.95516 -9.61994 -9.39363 -9.04854 -8.34482 -7.07698 0.21454 0.46393 1.38393 1.38996 1.55817 2.05760 2.20419 2.21456 2.83980 3.00162 3.63733 3.71837 3.74844 3.90393 3.93475 3.99551 4.09240 4.17707 4.26830 4.39018 4.47780 4.51249 4.52100 4.54678 4.63109 4.71908 4.78566 4.83243 4.90926 5.01066 5.03836 5.08710 5.15000 5.19926 5.29922 5.36067 5.44923 5.73592 5.77905 5.95102 5.98395 6.06706 6.48100 6.69698 6.80046 8.25004 8.49131 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.003560 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.254922 B = 7863.679417 C = 8769.110042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.048 3.952 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.082 3.918 7 H 0.081 0.919 8 O -0.314 6.314 9 C 0.129 3.871 10 C -0.161 4.161 11 C -0.066 4.066 12 C -0.179 4.179 13 C 0.364 3.636 14 O -0.600 6.600 15 C -0.544 4.544 16 H 0.096 0.904 17 C 0.021 3.979 18 N -0.788 5.788 19 Si 0.997 3.003 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.245 1.245 23 C -0.053 4.053 24 C -0.208 4.208 25 C 0.036 3.964 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.282 0.718 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.071 0.929 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 23.402 -6.581 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.080 4.080 4 C -0.146 4.146 5 C -0.151 4.151 6 C 0.026 3.974 7 H 0.099 0.901 8 O -0.227 6.227 9 C 0.084 3.916 10 C -0.180 4.180 11 C -0.085 4.085 12 C -0.180 4.180 13 C 0.265 3.735 14 O -0.495 6.495 15 C -0.574 4.574 16 H 0.114 0.886 17 C -0.197 4.197 18 N -0.417 5.417 19 Si 0.815 3.185 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.167 1.167 23 C -0.071 4.071 24 C -0.226 4.226 25 C -0.093 4.093 26 H 0.047 0.953 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.154 0.846 39 H 0.171 0.829 40 H 0.089 0.911 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.325 22.882 -6.328 24.331 hybrid contribution -0.501 -0.599 0.511 0.933 sum -5.826 22.284 -5.817 23.756 Atomic orbital electron populations 1.22414 0.85802 1.02789 1.01336 1.61881 1.08953 1.14673 1.41967 1.22288 0.95886 0.88274 1.01527 1.21569 0.94058 1.01193 0.97776 1.21673 1.01129 0.91766 1.00529 1.22607 0.93049 0.93442 0.88340 0.90110 1.86016 1.79056 1.14636 1.42984 1.19165 0.95306 0.82675 0.94460 1.20419 1.05111 0.91923 1.00507 1.21120 0.96522 0.93899 0.96953 1.21467 1.02182 0.97708 0.96633 1.18798 0.80905 0.86303 0.87502 1.90440 1.48112 1.67007 1.43967 1.21461 1.35267 0.93195 1.07477 0.88641 1.27319 0.93713 0.98371 1.00331 1.70116 1.31291 1.07346 1.32968 0.85035 0.79376 0.77648 0.76481 1.18193 1.19317 1.16747 1.21364 0.95309 0.92917 0.97519 1.21407 1.06425 0.95001 0.99803 1.22523 0.94852 0.99194 0.92714 0.95348 0.89481 0.91555 0.88701 0.94508 0.90792 0.88213 0.90982 0.90317 0.83622 0.86792 0.90747 0.84581 0.82920 0.91070 0.94246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.59 127.69 1.22 1.58 16 2 N -0.55 -9.65 4.91 -922.57 -4.53 -14.19 16 3 C 0.05 0.62 5.46 86.32 0.47 1.10 16 4 C -0.11 -1.33 6.09 30.65 0.19 -1.14 16 5 C -0.11 -1.89 5.65 30.68 0.17 -1.72 16 6 C 0.08 1.82 2.27 30.65 0.07 1.89 16 7 H 0.08 1.87 6.31 -2.39 -0.02 1.86 16 8 O -0.31 -8.97 9.79 -89.80 -0.88 -9.84 16 9 C 0.13 4.34 6.62 22.71 0.15 4.49 16 10 C -0.16 -5.90 9.97 22.34 0.22 -5.68 16 11 C -0.07 -2.99 9.59 22.53 0.22 -2.78 16 12 C -0.18 -8.87 5.89 -19.99 -0.12 -8.99 16 13 C 0.36 22.04 6.91 25.61 0.18 22.21 16 14 O -0.60 -41.27 14.89 -4.76 -0.07 -41.35 16 15 C -0.54 -30.88 8.86 23.65 0.21 -30.67 16 16 H 0.10 4.79 6.01 -2.91 -0.02 4.77 16 17 C 0.02 1.18 5.50 85.40 0.47 1.65 16 18 N -0.79 -47.48 11.73 21.89 0.26 -47.22 16 19 Si 1.00 39.51 29.56 68.60 2.03 41.54 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 23 C -0.05 -2.16 9.43 22.53 0.21 -1.95 16 24 C -0.21 -6.99 8.22 22.34 0.18 -6.81 16 25 C 0.04 0.76 4.72 86.33 0.41 1.17 16 26 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.98 8.09 -2.38 -0.02 0.96 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 0.95 8.09 -2.38 -0.02 0.93 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.11 5.40 7.65 -2.91 -0.02 5.37 16 37 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 38 H 0.14 5.31 6.19 -2.91 -0.02 5.29 16 39 H 0.15 4.24 5.39 -2.91 -0.02 4.22 16 40 H 0.07 1.71 6.86 -2.38 -0.02 1.70 16 41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -74.69 333.06 2.09 -72.60 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.03 Total: 24.10 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.26 Total: -25.64 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -4.27 Total: -61.40 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.95 Total: -51.19 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -74.69 2.09 -72.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233518254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.954 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds