Wall clock time and date at job start Tue Mar 31 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46840 * 111.00075 * 2 1 4 4 C 1.53042 * 109.52322 * 185.84209 * 3 2 1 5 5 C 1.53119 * 109.27750 * 300.82121 * 4 3 2 6 6 C 1.53115 * 109.16041 * 57.65596 * 5 4 3 7 7 H 1.09004 * 109.50318 * 62.32307 * 6 5 4 8 8 O 1.42904 * 109.50265 * 182.40432 * 6 5 4 9 9 C 1.35637 * 116.99699 * 204.95626 * 8 6 5 10 10 C 1.38667 * 120.16339 * 354.75093 * 9 8 6 11 11 C 1.38088 * 120.09487 * 179.97438 * 10 9 8 12 12 C 1.38696 * 120.41273 * 359.97438 * 11 10 9 13 13 C 1.37699 * 120.32227 * 0.02562 * 12 11 10 14 14 C 1.39846 * 119.90259 * 0.02562 * 13 12 11 15 15 C 1.47530 * 120.20883 * 179.97438 * 14 13 12 16 16 O 1.21804 * 120.00394 * 179.97438 * 15 14 13 17 17 C 1.41838 * 119.99507 * 359.97438 * 15 14 13 18 18 H 1.08000 * 120.00068 * 6.79264 * 17 15 14 19 19 C 1.40324 * 119.99695 * 186.79220 * 17 15 14 20 20 N 1.30541 * 119.99843 * 353.86738 * 19 17 15 21 21 Si 1.86797 * 119.99910 * 173.86699 * 19 17 15 22 22 H 1.48502 * 109.46936 * 94.98488 * 21 19 17 23 23 H 1.48500 * 109.47051 * 214.98223 * 21 19 17 24 24 H 1.48502 * 109.47262 * 334.98553 * 21 19 17 25 25 C 1.46850 * 110.99988 * 124.25473 * 2 1 3 26 26 H 1.08997 * 109.47231 * 56.04057 * 1 2 3 27 27 H 1.08996 * 109.47176 * 176.04705 * 1 2 3 28 28 H 1.08997 * 109.46725 * 296.04361 * 1 2 3 29 29 H 1.08999 * 109.46608 * 65.82744 * 3 2 1 30 30 H 1.09008 * 109.45514 * 305.85273 * 3 2 1 31 31 H 1.09003 * 109.50272 * 180.87665 * 4 3 2 32 32 H 1.09007 * 109.50314 * 60.76507 * 4 3 2 33 33 H 1.08997 * 109.52036 * 297.74630 * 5 4 3 34 34 H 1.09000 * 109.57161 * 177.58776 * 5 4 3 35 35 H 1.08004 * 119.95575 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.79527 * 180.02562 * 11 10 9 37 37 H 1.07995 * 119.83636 * 180.27342 * 12 11 10 38 38 H 1.07994 * 120.04930 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99718 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.49292 * 54.15557 * 25 2 1 41 41 H 1.08994 * 109.42753 * 294.19580 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5368 1.0143 6 6 3.5182 -0.8716 1.0207 7 1 3.7819 -1.3839 0.0954 8 8 4.0318 -1.6042 2.1349 9 6 4.0445 -2.9564 2.0296 10 6 3.4744 -3.5748 0.9271 11 6 3.4885 -4.9515 0.8212 12 6 4.0716 -5.7262 1.8130 13 6 4.6426 -5.1300 2.9151 14 6 4.6348 -3.7368 3.0365 15 6 5.2441 -3.0910 4.2148 16 8 5.2357 -1.8773 4.3165 17 6 5.8398 -3.8836 5.2290 18 1 5.9458 -4.9493 5.0892 19 6 6.2913 -3.2831 6.4142 20 7 6.2736 -1.9835 6.5352 21 14 6.9178 -4.3435 7.8186 22 1 8.3958 -4.4580 7.7313 23 1 6.5453 -3.7200 9.1139 24 1 6.3103 -5.6955 7.7272 25 6 1.9953 -0.7717 1.1332 26 1 -0.3633 0.5740 -0.8523 27 1 -0.3633 -1.0252 -0.0708 28 1 -0.3633 0.4512 0.9233 29 1 1.7325 1.8608 0.9376 30 1 1.5633 1.9256 -0.8331 31 1 3.9099 2.3512 -0.1311 32 1 3.7813 0.8567 -1.0908 33 1 3.8888 1.0353 1.9559 34 1 5.1999 0.4712 0.8914 35 1 3.0187 -2.9789 0.1502 36 1 3.0435 -5.4281 -0.0398 37 1 4.0813 -6.8019 1.7184 38 1 5.0957 -5.7374 3.6845 39 1 6.5861 -1.5684 7.3543 40 1 1.5638 -1.7727 1.1232 41 1 1.7319 -0.2722 2.0654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:01 Heat of formation + Delta-G solvation = -48.971585 kcal Electronic energy + Delta-G solvation = -23278.366118 eV Core-core repulsion = 19930.398069 eV Total energy + Delta-G solvation = -3347.968049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00026 -38.45648 -36.61000 -35.93066 -33.18556 -32.57258 -30.68274 -30.10821 -28.86360 -26.77803 -26.60855 -23.33528 -23.08976 -22.55242 -21.13120 -19.92466 -19.38339 -17.49156 -16.54162 -16.00433 -15.51755 -15.34665 -15.01128 -14.68770 -14.45589 -14.13047 -13.93033 -13.40395 -13.26510 -13.16951 -12.75707 -12.60749 -12.31232 -12.20763 -12.07368 -11.54123 -11.43410 -11.30323 -11.19813 -10.96915 -10.90344 -10.80382 -10.58356 -10.33958 -10.13976 -10.06077 -10.02683 -8.90398 -8.44325 -8.14488 -7.38566 -7.30755 -6.20544 -4.79136 1.86020 2.12284 3.08631 3.16570 3.20408 3.54815 4.05763 4.07366 4.15417 4.69887 4.80850 4.87056 4.98883 5.08660 5.26269 5.33457 5.38608 5.40630 5.47044 5.53053 5.66529 5.72090 5.73528 5.76171 5.86329 5.89783 5.90477 5.99545 6.01500 6.23072 6.30072 6.36963 6.46484 6.74964 6.90338 6.95464 6.99767 7.02140 7.21503 7.34031 7.54597 8.11874 8.21532 8.88597 8.94160 10.41748 10.65389 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.004710 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.481938 B = 5943.298984 C = 6963.910868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.051 3.949 4 C -0.112 4.112 5 C -0.115 4.115 6 C 0.084 3.916 7 H 0.075 0.925 8 O -0.262 6.262 9 C 0.149 3.851 10 C -0.229 4.229 11 C -0.093 4.093 12 C -0.176 4.176 13 C -0.059 4.059 14 C -0.138 4.138 15 C 0.392 3.608 16 O -0.518 6.518 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.081 3.919 20 N -0.739 5.739 21 Si 0.903 3.097 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 C 0.032 3.968 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.272 0.728 40 H 0.080 0.920 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 1.648 -11.819 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.153 4.153 6 C 0.026 3.974 7 H 0.093 0.907 8 O -0.173 6.173 9 C 0.103 3.897 10 C -0.248 4.248 11 C -0.111 4.111 12 C -0.195 4.195 13 C -0.078 4.078 14 C -0.139 4.139 15 C 0.285 3.715 16 O -0.405 6.405 17 C -0.555 4.555 18 H 0.090 0.910 19 C -0.141 4.141 20 N -0.368 5.368 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.096 4.096 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.550 2.325 -11.960 14.333 hybrid contribution -0.204 -0.459 1.175 1.278 sum -7.755 1.865 -10.785 13.413 Atomic orbital electron populations 1.22340 0.87109 1.02335 1.00412 1.61870 1.07700 1.13746 1.43315 1.22169 0.95821 0.89112 1.00569 1.21550 0.94183 1.00315 0.98919 1.21578 1.01004 0.93377 0.99339 1.22289 0.92034 0.93196 0.89853 0.90720 1.86520 1.77296 1.14699 1.38806 1.19429 0.93906 0.82863 0.93521 1.21182 1.08088 0.95899 0.99623 1.20815 0.98975 0.93017 0.98289 1.20947 1.03371 0.99178 0.95986 1.21394 0.95978 0.93643 0.96738 1.21550 1.01019 0.93118 0.98258 1.17991 0.81053 0.88992 0.83442 1.90541 1.57294 1.15147 1.77560 1.20897 1.37244 0.95940 1.01380 0.90990 1.25950 0.93886 0.94772 0.99498 1.69977 1.31136 1.10267 1.25414 0.86418 0.79555 0.81013 0.80296 1.19577 1.20212 1.18507 1.22655 0.95837 0.99007 0.92111 0.91354 0.91291 0.95585 0.94592 0.90668 0.90715 0.90993 0.90742 0.90573 0.85883 0.86959 0.86834 0.84835 0.91716 0.90155 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 60.06 0.58 0.85 16 2 N -0.54 -6.83 4.91 -242.97 -1.19 -8.03 16 3 C 0.05 0.58 5.47 -3.84 -0.02 0.56 16 4 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 5 C -0.12 -1.77 5.66 -26.61 -0.15 -1.92 16 6 C 0.08 1.44 2.27 -26.65 -0.06 1.38 16 7 H 0.07 1.22 6.30 -51.93 -0.33 0.89 16 8 O -0.26 -5.97 7.88 -40.44 -0.32 -6.28 16 9 C 0.15 3.33 6.62 -38.61 -0.26 3.07 16 10 C -0.23 -4.16 8.25 -39.48 -0.33 -4.48 16 11 C -0.09 -1.53 10.04 -39.47 -0.40 -1.92 16 12 C -0.18 -3.05 10.02 -39.61 -0.40 -3.44 16 13 C -0.06 -1.23 9.43 -39.18 -0.37 -1.59 16 14 C -0.14 -3.38 5.90 -104.69 -0.62 -3.99 16 15 C 0.39 11.43 6.90 -34.42 -0.24 11.19 16 16 O -0.52 -16.83 13.74 -16.74 -0.23 -17.06 16 17 C -0.52 -14.67 8.83 -37.42 -0.33 -15.00 16 18 H 0.07 1.83 6.07 -52.49 -0.32 1.51 16 19 C 0.08 2.23 5.49 -17.32 -0.10 2.13 16 20 N -0.74 -21.66 11.76 55.57 0.65 -21.00 16 21 Si 0.90 19.58 29.57 -169.99 -5.03 14.56 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 C 0.03 0.49 4.74 -3.83 -0.02 0.47 16 26 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.70 8.09 -51.92 -0.42 0.28 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.12 1.96 5.43 -52.48 -0.29 1.68 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16 39 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 40 H 0.08 1.25 6.92 -51.93 -0.36 0.89 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -33.55 331.16 -9.80 -43.35 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.82 Total: 3.64 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.86 Total: -14.16 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: -0.54 Total: -29.03 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.55 Total: -23.34 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.55 -9.80 -43.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.622 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds