Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46840 * 111.00075 * 2 1 4 4 C 1.53042 * 109.52322 * 185.84209 * 3 2 1 5 5 C 1.53119 * 109.27750 * 300.82121 * 4 3 2 6 6 C 1.53115 * 109.16041 * 57.65596 * 5 4 3 7 7 H 1.09004 * 109.50318 * 62.32307 * 6 5 4 8 8 O 1.42904 * 109.50265 * 182.40432 * 6 5 4 9 9 C 1.35637 * 116.99699 * 204.95626 * 8 6 5 10 10 C 1.38667 * 120.16339 * 354.75093 * 9 8 6 11 11 C 1.38088 * 120.09487 * 179.97438 * 10 9 8 12 12 C 1.38696 * 120.41273 * 359.97438 * 11 10 9 13 13 C 1.37699 * 120.32227 * 0.02562 * 12 11 10 14 14 C 1.39846 * 119.90259 * 0.02562 * 13 12 11 15 15 C 1.47530 * 120.20883 * 179.97438 * 14 13 12 16 16 O 1.21804 * 120.00394 * 179.97438 * 15 14 13 17 17 C 1.41838 * 119.99507 * 359.97438 * 15 14 13 18 18 H 1.08000 * 120.00068 * 6.79264 * 17 15 14 19 19 C 1.40324 * 119.99695 * 186.79220 * 17 15 14 20 20 N 1.30541 * 119.99843 * 353.86738 * 19 17 15 21 21 Si 1.86797 * 119.99910 * 173.86699 * 19 17 15 22 22 H 1.48502 * 109.46936 * 94.98488 * 21 19 17 23 23 H 1.48500 * 109.47051 * 214.98223 * 21 19 17 24 24 H 1.48502 * 109.47262 * 334.98553 * 21 19 17 25 25 C 1.46850 * 110.99988 * 124.25473 * 2 1 3 26 26 H 1.08997 * 109.47231 * 56.04057 * 1 2 3 27 27 H 1.08996 * 109.47176 * 176.04705 * 1 2 3 28 28 H 1.08997 * 109.46725 * 296.04361 * 1 2 3 29 29 H 1.08999 * 109.46608 * 65.82744 * 3 2 1 30 30 H 1.09008 * 109.45514 * 305.85273 * 3 2 1 31 31 H 1.09003 * 109.50272 * 180.87665 * 4 3 2 32 32 H 1.09007 * 109.50314 * 60.76507 * 4 3 2 33 33 H 1.08997 * 109.52036 * 297.74630 * 5 4 3 34 34 H 1.09000 * 109.57161 * 177.58776 * 5 4 3 35 35 H 1.08004 * 119.95575 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.79527 * 180.02562 * 11 10 9 37 37 H 1.07995 * 119.83636 * 180.27342 * 12 11 10 38 38 H 1.07994 * 120.04930 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99718 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.49292 * 54.15557 * 25 2 1 41 41 H 1.08994 * 109.42753 * 294.19580 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5368 1.0143 6 6 3.5182 -0.8716 1.0207 7 1 3.7819 -1.3839 0.0954 8 8 4.0318 -1.6042 2.1349 9 6 4.0445 -2.9564 2.0296 10 6 3.4744 -3.5748 0.9271 11 6 3.4885 -4.9515 0.8212 12 6 4.0716 -5.7262 1.8130 13 6 4.6426 -5.1300 2.9151 14 6 4.6348 -3.7368 3.0365 15 6 5.2441 -3.0910 4.2148 16 8 5.2357 -1.8773 4.3165 17 6 5.8398 -3.8836 5.2290 18 1 5.9458 -4.9493 5.0892 19 6 6.2913 -3.2831 6.4142 20 7 6.2736 -1.9835 6.5352 21 14 6.9178 -4.3435 7.8186 22 1 8.3958 -4.4580 7.7313 23 1 6.5453 -3.7200 9.1139 24 1 6.3103 -5.6955 7.7272 25 6 1.9953 -0.7717 1.1332 26 1 -0.3633 0.5740 -0.8523 27 1 -0.3633 -1.0252 -0.0708 28 1 -0.3633 0.4512 0.9233 29 1 1.7325 1.8608 0.9376 30 1 1.5633 1.9256 -0.8331 31 1 3.9099 2.3512 -0.1311 32 1 3.7813 0.8567 -1.0908 33 1 3.8888 1.0353 1.9559 34 1 5.1999 0.4712 0.8914 35 1 3.0187 -2.9789 0.1502 36 1 3.0435 -5.4281 -0.0398 37 1 4.0813 -6.8019 1.7184 38 1 5.0957 -5.7374 3.6845 39 1 6.5861 -1.5684 7.3543 40 1 1.5638 -1.7727 1.1232 41 1 1.7319 -0.2722 2.0654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -70.762192 kcal Electronic energy + Delta-G solvation = -23279.311030 eV Core-core repulsion = 19930.398069 eV Total energy + Delta-G solvation = -3348.912961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44549 -39.78933 -38.29246 -37.71758 -34.73002 -34.25615 -32.27172 -31.41362 -30.36238 -28.66680 -27.74779 -24.66440 -24.54490 -23.85025 -22.50018 -21.58136 -20.76981 -19.02547 -18.46074 -17.48109 -17.08406 -16.71072 -16.32001 -16.05776 -15.82175 -15.43870 -15.26585 -14.95922 -14.79990 -14.71467 -14.20987 -13.94984 -13.73498 -13.61680 -13.28614 -13.23872 -12.97619 -12.73224 -12.62635 -12.58252 -12.15879 -12.09660 -12.04968 -11.98526 -11.71599 -11.56004 -11.30670 -10.96257 -9.72362 -9.47332 -9.46031 -8.97401 -8.28293 -7.00317 0.26970 0.61287 1.36693 1.38133 1.54654 2.21908 2.26016 2.29830 2.89941 2.99819 3.60173 3.67462 3.80208 3.90268 3.97718 4.03319 4.07164 4.13570 4.32392 4.36745 4.43826 4.48576 4.56742 4.59556 4.60615 4.69077 4.79307 4.82128 4.92761 4.96813 4.98109 5.07943 5.18134 5.23977 5.26736 5.44376 5.55969 5.71505 5.85183 5.97948 6.01606 6.09310 6.66908 6.74834 6.91342 8.34179 8.56185 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.004710 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.481938 B = 5943.298984 C = 6963.910868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.048 3.952 4 C -0.101 4.101 5 C -0.117 4.117 6 C 0.078 3.922 7 H 0.086 0.914 8 O -0.306 6.306 9 C 0.130 3.870 10 C -0.224 4.224 11 C -0.071 4.071 12 C -0.167 4.167 13 C -0.063 4.063 14 C -0.195 4.195 15 C 0.367 3.633 16 O -0.574 6.574 17 C -0.552 4.552 18 H 0.092 0.908 19 C 0.023 3.977 20 N -0.794 5.794 21 Si 0.995 3.005 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.244 1.244 25 C 0.045 3.955 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.078 0.922 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -0.634 -14.092 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.079 4.079 4 C -0.139 4.139 5 C -0.155 4.155 6 C 0.022 3.978 7 H 0.104 0.896 8 O -0.218 6.218 9 C 0.084 3.916 10 C -0.242 4.242 11 C -0.089 4.089 12 C -0.185 4.185 13 C -0.081 4.081 14 C -0.197 4.197 15 C 0.264 3.736 16 O -0.467 6.467 17 C -0.583 4.583 18 H 0.110 0.890 19 C -0.195 4.195 20 N -0.423 5.423 21 Si 0.813 3.187 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.167 1.167 25 C -0.084 4.084 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.740 0.023 -14.262 16.727 hybrid contribution 0.104 0.252 1.752 1.773 sum -8.636 0.275 -12.510 15.204 Atomic orbital electron populations 1.22456 0.85448 1.03177 1.01304 1.61945 1.09170 1.14223 1.41149 1.22292 0.95552 0.88624 1.01435 1.21546 0.94364 1.00773 0.97188 1.21643 1.00543 0.93210 1.00068 1.22581 0.93236 0.93275 0.88749 0.89602 1.86473 1.78140 1.15646 1.41586 1.19680 0.94588 0.82869 0.94488 1.21443 1.07114 0.97171 0.98478 1.21432 0.96392 0.92052 0.98997 1.21374 1.01419 1.01398 0.94273 1.21483 0.96387 0.91957 0.98296 1.21263 1.04865 0.95157 0.98415 1.18752 0.80761 0.88709 0.85329 1.90474 1.59612 1.17223 1.79354 1.21418 1.37720 0.97020 1.02158 0.88972 1.27259 0.93288 0.96201 1.02727 1.70143 1.32383 1.13014 1.26798 0.85059 0.79171 0.79031 0.75458 1.18325 1.19441 1.16702 1.22426 0.94596 0.99178 0.92164 0.88752 0.90827 0.96068 0.95542 0.87411 0.88571 0.89760 0.93377 0.91916 0.83578 0.81873 0.82469 0.84853 0.91080 0.90345 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.59 127.69 1.22 1.67 16 2 N -0.54 -12.82 4.91 -922.61 -4.53 -17.35 16 3 C 0.05 1.01 5.47 86.33 0.47 1.49 16 4 C -0.10 -2.23 6.09 30.65 0.19 -2.04 16 5 C -0.12 -3.82 5.66 30.67 0.17 -3.65 16 6 C 0.08 2.79 2.27 30.64 0.07 2.86 16 7 H 0.09 2.80 6.30 -2.38 -0.02 2.78 16 8 O -0.31 -15.00 7.88 -68.63 -0.54 -15.54 16 9 C 0.13 6.02 6.62 22.90 0.15 6.18 16 10 C -0.22 -7.75 8.25 22.34 0.18 -7.56 16 11 C -0.07 -2.04 10.04 22.34 0.22 -1.81 16 12 C -0.17 -5.17 10.02 22.25 0.22 -4.95 16 13 C -0.06 -2.59 9.43 22.53 0.21 -2.38 16 14 C -0.20 -10.05 5.90 -19.91 -0.12 -10.17 16 15 C 0.37 22.99 6.90 25.61 0.18 23.17 16 16 O -0.57 -40.71 13.74 16.20 0.22 -40.48 16 17 C -0.55 -32.48 8.83 23.67 0.21 -32.27 16 18 H 0.09 4.81 6.07 -2.91 -0.02 4.79 16 19 C 0.02 1.31 5.49 85.39 0.47 1.78 16 20 N -0.79 -49.33 11.76 21.88 0.26 -49.07 16 21 Si 0.99 40.98 29.57 68.60 2.03 43.01 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.24 -9.28 7.11 99.48 0.71 -8.58 16 25 C 0.04 1.41 4.74 86.32 0.41 1.82 16 26 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 1.62 8.09 -2.38 -0.02 1.60 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.15 4.30 5.43 -2.91 -0.02 4.29 16 36 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.13 5.29 6.22 -2.91 -0.02 5.27 16 39 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 40 H 0.08 2.44 6.92 -2.38 -0.02 2.42 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -82.04 331.16 2.74 -79.30 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 1.03 Total: 26.01 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.27 Total: -25.89 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -4.27 Total: -66.42 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.32 Total: -56.02 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -82.04 2.74 -79.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.541 kcal (2) G-P(sol) polarization free energy of solvation -82.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds