Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32599 * 1 3 3 C 1.47765 * 120.00047 * 2 1 4 4 C 1.39562 * 120.07359 * 359.97438 * 3 2 1 5 5 C 1.37942 * 120.00708 * 179.97438 * 4 3 2 6 6 C 1.38697 * 120.14799 * 0.02562 * 5 4 3 7 7 O 1.35946 * 119.93418 * 179.97438 * 6 5 4 8 8 C 1.42906 * 117.00122 * 355.36218 * 7 6 5 9 9 H 1.09000 * 110.64037 * 328.55811 * 8 7 6 10 10 C 1.55150 * 110.72252 * 205.41260 * 8 7 6 11 11 C 1.54904 * 101.58552 * 206.13577 * 10 8 7 12 12 N 1.47424 * 104.82952 * 37.00866 * 11 10 8 13 13 C 1.36945 * 125.64879 * 155.83654 * 12 11 10 14 14 H 1.08003 * 120.00085 * 332.76603 * 13 12 11 15 15 C 1.38810 * 119.99867 * 152.76692 * 13 12 11 16 16 N 1.31621 * 119.99764 * 160.81737 * 15 13 12 17 17 Si 1.86793 * 120.00193 * 340.80844 * 15 13 12 18 18 H 1.48501 * 109.47281 * 84.79759 * 17 15 13 19 19 H 1.48506 * 109.47343 * 204.79782 * 17 15 13 20 20 H 1.48501 * 109.47176 * 324.79671 * 17 15 13 21 21 C 1.47319 * 108.73863 * 335.71740 * 12 11 10 22 22 C 1.39276 * 120.13170 * 359.97438 * 6 5 4 23 23 O 1.36000 * 120.00082 * 179.97438 * 22 6 5 24 24 C 1.42896 * 116.99887 * 180.02562 * 23 22 6 25 25 C 1.38280 * 119.99929 * 359.74644 * 22 6 5 26 26 H 1.07997 * 120.00206 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99847 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99847 * 179.97438 * 2 1 3 29 29 H 1.08002 * 119.99063 * 0.02562 * 4 3 2 30 30 H 1.08008 * 119.92655 * 179.97438 * 5 4 3 31 31 H 1.08997 * 111.00565 * 324.21335 * 10 8 7 32 32 H 1.09002 * 111.00553 * 88.06201 * 10 8 7 33 33 H 1.08995 * 110.36982 * 155.84965 * 11 10 8 34 34 H 1.09002 * 110.37144 * 278.06451 * 11 10 8 35 35 H 0.96997 * 119.99703 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.06433 * 241.87017 * 21 12 11 37 37 H 1.09006 * 109.84755 * 120.60917 * 21 12 11 38 38 H 1.09011 * 109.46863 * 180.02562 * 24 23 22 39 39 H 1.09002 * 109.47436 * 299.99859 * 24 23 22 40 40 H 1.08996 * 109.47471 * 60.00576 * 24 23 22 41 41 H 1.07998 * 120.07741 * 180.27483 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2797 0.0000 4 6 1.3686 2.4892 -0.0005 5 6 2.0597 3.6830 0.0000 6 6 3.4466 3.6850 0.0005 7 8 4.1234 4.8641 0.0005 8 6 3.3456 6.0585 -0.1030 9 1 2.4465 5.8816 -0.6933 10 6 4.1865 7.2098 -0.7150 11 6 3.4804 8.4571 -0.1276 12 7 3.0970 8.0642 1.2406 13 6 2.8803 8.9218 2.2861 14 1 3.3799 9.8790 2.3119 15 6 2.0185 8.5608 3.3127 16 7 2.0853 9.1754 4.4747 17 14 0.7639 7.2030 3.0450 18 1 1.3987 5.8850 3.3005 19 1 -0.3767 7.3920 3.9771 20 1 0.2722 7.2524 1.6446 21 6 2.9825 6.5966 1.2971 22 6 4.1475 2.4814 0.0011 23 8 5.5075 2.4864 0.0011 24 6 6.1609 1.2156 0.0011 25 6 3.4605 1.2813 0.0064 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8659 -0.9353 0.0004 29 1 0.2886 2.4904 -0.0005 30 1 1.5195 4.6183 -0.0008 31 1 5.2234 7.1553 -0.3833 32 1 4.1253 7.2025 -1.8033 33 1 4.1660 9.3039 -0.1011 34 1 2.5960 8.7042 -0.7149 35 1 1.4833 8.9229 5.1921 36 1 1.9618 6.3106 1.5509 37 1 3.6762 6.1995 2.0383 38 1 7.2411 1.3625 0.0015 39 1 5.8701 0.6575 0.8911 40 1 5.8702 0.6575 -0.8889 41 1 4.0027 0.3473 0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233570403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = 11.505209 kcal Electronic energy + Delta-G solvation = -23062.000260 eV Core-core repulsion = 19716.654681 eV Total energy + Delta-G solvation = -3345.345579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60476 -38.89165 -37.57932 -36.47561 -33.51055 -32.38947 -30.47959 -29.94117 -28.99816 -27.92731 -27.03956 -24.42141 -23.28225 -22.69666 -20.64658 -20.26290 -20.03139 -18.45935 -17.17551 -16.79212 -16.62890 -16.13651 -15.75908 -15.44955 -14.90946 -14.39571 -14.23287 -14.03514 -13.82046 -13.18805 -13.01716 -12.60691 -12.55886 -12.47719 -12.29699 -12.04142 -11.84092 -11.48415 -11.41581 -11.17718 -11.16688 -10.97799 -10.73909 -10.57782 -10.21450 -10.02398 -9.68606 -9.41208 -8.66464 -8.61080 -7.55441 -7.00757 -5.98197 -3.35250 0.88218 1.31872 2.43697 3.22016 3.31188 3.33790 3.42207 3.47363 3.80859 4.51699 4.54893 4.69122 4.79805 4.90143 4.93745 5.02675 5.03745 5.12845 5.19755 5.25295 5.28376 5.35690 5.37191 5.43667 5.50594 5.63443 5.84021 5.94894 6.03826 6.10564 6.16768 6.26790 6.32821 6.39037 6.50635 6.57378 6.67192 6.67250 6.74288 7.17408 7.70378 7.75148 8.30294 8.80041 9.64993 10.15174 11.18338 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.005124 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.660739 B = 5462.713372 C = 6462.820494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.071 4.071 4 C -0.104 4.104 5 C -0.175 4.175 6 C 0.118 3.882 7 O -0.289 6.289 8 C 0.066 3.934 9 H 0.080 0.920 10 C -0.123 4.123 11 C 0.132 3.868 12 N -0.606 5.606 13 C -0.246 4.246 14 H 0.092 0.908 15 C 0.028 3.972 16 N -0.906 5.906 17 Si 0.886 3.114 18 H -0.283 1.283 19 H -0.301 1.301 20 H -0.277 1.277 21 C 0.103 3.897 22 C 0.095 3.905 23 O -0.304 6.304 24 C 0.027 3.973 25 C -0.162 4.162 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -18.759 -12.494 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.126 4.126 3 C -0.072 4.072 4 C -0.122 4.122 5 C -0.194 4.194 6 C 0.071 3.929 7 O -0.201 6.201 8 C 0.010 3.990 9 H 0.098 0.902 10 C -0.161 4.161 11 C 0.007 3.993 12 N -0.335 5.335 13 C -0.373 4.373 14 H 0.110 0.890 15 C -0.171 4.171 16 N -0.549 5.549 17 Si 0.717 3.283 18 H -0.210 1.210 19 H -0.229 1.229 20 H -0.204 1.204 21 C -0.022 4.022 22 C 0.049 3.951 23 O -0.217 6.217 24 C -0.068 4.068 25 C -0.180 4.180 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.129 -18.453 -12.236 22.243 hybrid contribution -1.097 -1.059 0.081 1.527 sum 1.031 -19.512 -12.155 23.011 Atomic orbital electron populations 1.24338 0.95681 1.02220 1.00196 1.21686 0.95113 0.95398 1.00376 1.18703 0.92237 0.93193 1.03049 1.21001 0.99885 0.90894 1.00389 1.21158 0.92176 0.99892 1.06146 1.18417 0.90020 0.84924 0.99510 1.86227 1.35096 1.11558 1.87251 1.23631 0.94594 0.82668 0.98127 0.90217 1.22871 1.00435 0.93426 0.99350 1.21673 0.96549 0.94745 0.86353 1.44659 1.82557 0.99756 1.06489 1.18645 1.21508 1.00166 0.96958 0.89047 1.25174 0.98075 0.98001 0.95895 1.69801 1.39026 1.43996 1.02098 0.86868 0.82233 0.82189 0.76987 1.21032 1.22897 1.20373 1.22147 0.98746 0.86879 0.94463 1.18113 0.82895 0.91318 1.02757 1.86216 1.15478 1.30917 1.89127 1.23042 0.98082 0.84749 1.00954 1.21070 0.94200 0.96103 1.06668 0.87902 0.87985 0.86676 0.85342 0.84337 0.89833 0.90713 0.92463 0.95358 0.92576 0.95346 0.92911 0.88268 0.92852 0.92933 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 14.15 28.83 0.41 -1.27 16 2 C -0.11 -1.08 9.91 -37.59 -0.37 -1.45 16 3 C -0.07 -0.90 5.87 -105.01 -0.62 -1.52 16 4 C -0.10 -1.41 9.39 -39.20 -0.37 -1.78 16 5 C -0.18 -2.77 8.93 -39.52 -0.35 -3.12 16 6 C 0.12 2.02 6.70 -39.03 -0.26 1.76 16 7 O -0.29 -5.42 9.64 -34.25 -0.33 -5.75 16 8 C 0.07 1.23 2.75 -24.90 -0.07 1.16 16 9 H 0.08 1.34 6.10 -51.93 -0.32 1.02 16 10 C -0.12 -2.06 6.81 -24.59 -0.17 -2.23 16 11 C 0.13 2.61 7.23 -2.53 -0.02 2.59 16 12 N -0.61 -15.09 3.10 -169.83 -0.53 -15.62 16 13 C -0.25 -7.11 10.55 -15.06 -0.16 -7.27 16 14 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 15 C 0.03 0.84 5.45 -17.43 -0.09 0.74 16 16 N -0.91 -28.35 13.97 55.49 0.78 -27.57 16 17 Si 0.89 23.19 24.46 -169.99 -4.16 19.03 16 18 H -0.28 -7.30 6.85 56.52 0.39 -6.91 16 19 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 20 H -0.28 -7.02 6.99 56.52 0.39 -6.63 16 21 C 0.10 2.36 5.28 -2.90 -0.02 2.35 16 22 C 0.09 1.45 6.69 -39.18 -0.26 1.18 16 23 O -0.30 -4.48 10.27 -34.42 -0.35 -4.84 16 24 C 0.03 0.25 9.81 101.05 0.99 1.24 16 25 C -0.16 -2.04 8.77 -39.07 -0.34 -2.38 16 26 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.10 0.91 6.03 -52.49 -0.32 0.60 16 28 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.13 1.48 6.15 -52.49 -0.32 1.16 16 30 H 0.14 2.21 5.72 -52.48 -0.30 1.91 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 36 H 0.03 0.70 3.21 -51.93 -0.17 0.53 16 37 H 0.05 1.32 8.06 -51.93 -0.42 0.90 16 38 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 40 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.13 1.28 6.29 -52.49 -0.33 0.95 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -33.56 330.75 -6.81 -40.38 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.50 Total: -0.61 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.70 Total: -10.01 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.25 Total: -43.19 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.68 Total: -10.59 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.16 Total: 19.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.56 -6.81 -40.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233570403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.881 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds