Wall clock time and date at job start Tue Mar 31 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32599 * 1 3 3 C 1.47765 * 120.00047 * 2 1 4 4 C 1.39562 * 120.07359 * 359.97438 * 3 2 1 5 5 C 1.37942 * 120.00708 * 179.97438 * 4 3 2 6 6 C 1.38697 * 120.14799 * 0.02562 * 5 4 3 7 7 O 1.35946 * 119.93418 * 179.97438 * 6 5 4 8 8 C 1.42906 * 117.00122 * 355.36218 * 7 6 5 9 9 H 1.09000 * 110.64037 * 328.55811 * 8 7 6 10 10 C 1.55150 * 110.72252 * 205.41260 * 8 7 6 11 11 C 1.54904 * 101.58552 * 206.13577 * 10 8 7 12 12 N 1.47424 * 104.82952 * 37.00866 * 11 10 8 13 13 C 1.36945 * 125.64879 * 155.83654 * 12 11 10 14 14 H 1.08003 * 120.00085 * 332.76603 * 13 12 11 15 15 C 1.38810 * 119.99867 * 152.76692 * 13 12 11 16 16 N 1.31621 * 119.99764 * 160.81737 * 15 13 12 17 17 Si 1.86793 * 120.00193 * 340.80844 * 15 13 12 18 18 H 1.48501 * 109.47281 * 84.79759 * 17 15 13 19 19 H 1.48506 * 109.47343 * 204.79782 * 17 15 13 20 20 H 1.48501 * 109.47176 * 324.79671 * 17 15 13 21 21 C 1.47319 * 108.73863 * 335.71740 * 12 11 10 22 22 C 1.39276 * 120.13170 * 359.97438 * 6 5 4 23 23 O 1.36000 * 120.00082 * 179.97438 * 22 6 5 24 24 C 1.42896 * 116.99887 * 180.02562 * 23 22 6 25 25 C 1.38280 * 119.99929 * 359.74644 * 22 6 5 26 26 H 1.07997 * 120.00206 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99847 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99847 * 179.97438 * 2 1 3 29 29 H 1.08002 * 119.99063 * 0.02562 * 4 3 2 30 30 H 1.08008 * 119.92655 * 179.97438 * 5 4 3 31 31 H 1.08997 * 111.00565 * 324.21335 * 10 8 7 32 32 H 1.09002 * 111.00553 * 88.06201 * 10 8 7 33 33 H 1.08995 * 110.36982 * 155.84965 * 11 10 8 34 34 H 1.09002 * 110.37144 * 278.06451 * 11 10 8 35 35 H 0.96997 * 119.99703 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.06433 * 241.87017 * 21 12 11 37 37 H 1.09006 * 109.84755 * 120.60917 * 21 12 11 38 38 H 1.09011 * 109.46863 * 180.02562 * 24 23 22 39 39 H 1.09002 * 109.47436 * 299.99859 * 24 23 22 40 40 H 1.08996 * 109.47471 * 60.00576 * 24 23 22 41 41 H 1.07998 * 120.07741 * 180.27483 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2797 0.0000 4 6 1.3686 2.4892 -0.0005 5 6 2.0597 3.6830 0.0000 6 6 3.4466 3.6850 0.0005 7 8 4.1234 4.8641 0.0005 8 6 3.3456 6.0585 -0.1030 9 1 2.4465 5.8816 -0.6933 10 6 4.1865 7.2098 -0.7150 11 6 3.4804 8.4571 -0.1276 12 7 3.0970 8.0642 1.2406 13 6 2.8803 8.9218 2.2861 14 1 3.3799 9.8790 2.3119 15 6 2.0185 8.5608 3.3127 16 7 2.0853 9.1754 4.4747 17 14 0.7639 7.2030 3.0450 18 1 1.3987 5.8850 3.3005 19 1 -0.3767 7.3920 3.9771 20 1 0.2722 7.2524 1.6446 21 6 2.9825 6.5966 1.2971 22 6 4.1475 2.4814 0.0011 23 8 5.5075 2.4864 0.0011 24 6 6.1609 1.2156 0.0011 25 6 3.4605 1.2813 0.0064 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8659 -0.9353 0.0004 29 1 0.2886 2.4904 -0.0005 30 1 1.5195 4.6183 -0.0008 31 1 5.2234 7.1553 -0.3833 32 1 4.1253 7.2025 -1.8033 33 1 4.1660 9.3039 -0.1011 34 1 2.5960 8.7042 -0.7149 35 1 1.4833 8.9229 5.1921 36 1 1.9618 6.3106 1.5509 37 1 3.6762 6.1995 2.0383 38 1 7.2411 1.3625 0.0015 39 1 5.8701 0.6575 0.8911 40 1 5.8702 0.6575 -0.8889 41 1 4.0027 0.3473 0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233570403.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:10 Heat of formation + Delta-G solvation = -9.871350 kcal Electronic energy + Delta-G solvation = -23062.927217 eV Core-core repulsion = 19716.654681 eV Total energy + Delta-G solvation = -3346.272536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73066 -40.17965 -38.66274 -37.95068 -34.68270 -34.22442 -31.72892 -31.48413 -30.17954 -29.40198 -27.88462 -26.34770 -24.28939 -23.91955 -22.35218 -21.66659 -20.90917 -19.65139 -19.13891 -18.01181 -17.86407 -17.59231 -16.81539 -16.41167 -16.21545 -15.91650 -15.53326 -15.37822 -15.02462 -14.79966 -14.47710 -14.30113 -13.89868 -13.66584 -13.46267 -13.32011 -13.06796 -12.93017 -12.72394 -12.49209 -12.42043 -12.34163 -12.22186 -11.93760 -11.82091 -11.60775 -11.37218 -10.84866 -10.68118 -9.64012 -9.07024 -8.62466 -8.27539 -5.61093 -0.08356 0.27184 1.22867 1.26991 1.38474 1.58476 2.03860 2.31972 2.33255 2.79718 2.94580 3.29333 3.52271 3.66716 3.68547 3.74540 3.86679 3.94697 4.18841 4.21598 4.29852 4.33567 4.38407 4.40517 4.47713 4.62287 4.64550 4.71078 4.77606 4.83264 4.90737 4.94282 5.07361 5.23668 5.25590 5.26868 5.59321 5.66199 5.68843 5.87337 6.03346 6.09786 6.56550 6.66407 7.42720 8.01918 8.92853 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.005124 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.660739 B = 5462.713372 C = 6462.820494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.117 4.117 5 C -0.184 4.184 6 C 0.074 3.926 7 O -0.305 6.305 8 C 0.078 3.922 9 H 0.101 0.899 10 C -0.108 4.108 11 C 0.126 3.874 12 N -0.625 5.625 13 C -0.241 4.241 14 H 0.063 0.937 15 C -0.029 4.029 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.283 1.283 19 H -0.300 1.300 20 H -0.261 1.261 21 C 0.101 3.899 22 C 0.086 3.914 23 O -0.333 6.333 24 C 0.017 3.983 25 C -0.159 4.159 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -22.071 -14.695 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.064 4.064 4 C -0.135 4.135 5 C -0.203 4.203 6 C 0.028 3.972 7 O -0.218 6.218 8 C 0.021 3.979 9 H 0.119 0.881 10 C -0.146 4.146 11 C 0.002 3.998 12 N -0.354 5.354 13 C -0.370 4.370 14 H 0.081 0.919 15 C -0.224 4.224 16 N -0.597 5.597 17 Si 0.776 3.224 18 H -0.210 1.210 19 H -0.229 1.229 20 H -0.187 1.187 21 C -0.024 4.024 22 C 0.041 3.959 23 O -0.248 6.248 24 C -0.077 4.077 25 C -0.178 4.178 26 H 0.145 0.855 27 H 0.117 0.883 28 H 0.157 0.843 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.338 -21.787 -14.486 26.197 hybrid contribution -0.794 -0.139 0.748 1.100 sum 0.544 -21.926 -13.737 25.880 Atomic orbital electron populations 1.24635 0.95524 1.03336 0.97383 1.21833 0.95560 0.94942 1.02122 1.19111 0.92547 0.94101 1.00651 1.21276 1.00942 0.90687 1.00634 1.21203 0.91898 1.00512 1.06666 1.18784 0.90858 0.84893 1.02632 1.86188 1.35492 1.12042 1.88111 1.23478 0.95915 0.83357 0.95178 0.88148 1.22838 0.99316 0.90871 1.01602 1.21917 0.97549 0.96404 0.83947 1.44788 1.82419 1.00364 1.07803 1.18623 1.20460 0.99714 0.98165 0.91908 1.25798 1.00075 1.00914 0.95649 1.69923 1.40271 1.46505 1.03020 0.85889 0.79638 0.79322 0.77538 1.21043 1.22858 1.18677 1.22151 0.97416 0.85832 0.97039 1.18353 0.83445 0.91544 1.02579 1.86172 1.15415 1.34047 1.89140 1.23379 0.98682 0.83237 1.02432 1.21424 0.94431 0.96404 1.05498 0.85493 0.88254 0.84293 0.83510 0.85082 0.90413 0.86403 0.92152 0.93489 0.92626 0.96181 0.96089 0.86680 0.91688 0.90959 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 14.15 66.66 0.94 -1.45 16 2 C -0.13 -2.05 9.91 23.63 0.23 -1.81 16 3 C -0.06 -1.44 5.87 -20.12 -0.12 -1.56 16 4 C -0.12 -3.00 9.39 22.52 0.21 -2.79 16 5 C -0.18 -5.70 8.93 22.31 0.20 -5.50 16 6 C 0.07 2.50 6.70 22.63 0.15 2.66 16 7 O -0.30 -11.44 9.64 -78.90 -0.76 -12.20 16 8 C 0.08 2.81 2.75 31.78 0.09 2.90 16 9 H 0.10 3.20 6.10 -2.39 -0.01 3.19 16 10 C -0.11 -3.45 6.81 31.98 0.22 -3.23 16 11 C 0.13 4.83 7.23 86.85 0.63 5.45 16 12 N -0.63 -31.44 3.10 -691.23 -2.14 -33.58 16 13 C -0.24 -14.39 10.55 84.03 0.89 -13.50 16 14 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 15 C -0.03 -1.76 5.45 84.86 0.46 -1.29 16 16 N -0.95 -61.63 13.97 21.65 0.30 -61.33 16 17 Si 0.95 49.00 24.46 68.60 1.68 50.68 16 18 H -0.28 -14.49 6.85 99.48 0.68 -13.81 16 19 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 20 H -0.26 -12.70 6.99 99.48 0.69 -12.01 16 21 C 0.10 4.68 5.28 86.67 0.46 5.14 16 22 C 0.09 2.55 6.69 22.53 0.15 2.70 16 23 O -0.33 -9.54 10.27 -79.51 -0.82 -10.36 16 24 C 0.02 0.27 9.81 113.37 1.11 1.39 16 25 C -0.16 -3.63 8.77 22.60 0.20 -3.43 16 26 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 27 H 0.10 1.43 6.03 -2.91 -0.02 1.41 16 28 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.15 3.05 6.15 -2.91 -0.02 3.03 16 30 H 0.13 4.10 5.72 -2.91 -0.02 4.08 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 36 H 0.02 0.99 3.21 -2.39 -0.01 0.98 16 37 H 0.02 1.09 8.06 -2.38 -0.02 1.07 16 38 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 0.89 7.65 -2.39 -0.02 0.87 16 40 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 41 H 0.17 2.56 6.29 -2.91 -0.02 2.54 16 Total: -1.00 -75.87 330.75 5.08 -70.79 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.00 Total: 10.33 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.82 Total: -14.33 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -1.84 Total: -94.91 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.58 Total: -22.56 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.68 Total: 50.68 kcal Total: -75.87 5.08 -70.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233570403.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.919 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds