Wall clock time and date at job start Tue Mar 31 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32603 * 1 3 3 C 1.47775 * 119.99944 * 2 1 4 4 C 1.39563 * 120.06859 * 0.02562 * 3 2 1 5 5 C 1.37948 * 119.99878 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.15025 * 359.97438 * 5 4 3 7 7 O 1.35946 * 119.93481 * 179.97438 * 6 5 4 8 8 C 1.42904 * 117.00125 * 5.31643 * 7 6 5 9 9 H 1.09005 * 110.88191 * 38.49437 * 8 7 6 10 10 C 1.55154 * 111.00553 * 162.41375 * 8 7 6 11 11 C 1.54336 * 103.02005 * 153.38547 * 10 8 7 12 12 N 1.47022 * 107.26493 * 338.13860 * 11 10 8 13 13 C 1.36936 * 125.64954 * 178.84987 * 12 11 10 14 14 H 1.08008 * 119.99846 * 179.69740 * 13 12 11 15 15 C 1.38811 * 120.00193 * 359.69501 * 13 12 11 16 16 N 1.31626 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46834 * 269.99681 * 17 15 13 19 19 H 1.48492 * 109.47397 * 29.99615 * 17 15 13 20 20 H 1.48498 * 109.47056 * 149.99915 * 17 15 13 21 21 C 1.47428 * 108.70343 * 358.59042 * 12 11 10 22 22 C 1.39288 * 120.13460 * 0.25683 * 6 5 4 23 23 O 1.35993 * 119.99910 * 179.72190 * 22 6 5 24 24 C 1.42901 * 116.99567 * 179.97438 * 23 22 6 25 25 C 1.38278 * 119.99022 * 359.48899 * 22 6 5 26 26 H 1.07997 * 120.00188 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99766 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99766 * 180.02562 * 2 1 3 29 29 H 1.08000 * 119.99845 * 359.95664 * 4 3 2 30 30 H 1.08005 * 119.92019 * 180.02562 * 5 4 3 31 31 H 1.08997 * 110.72236 * 271.94007 * 10 8 7 32 32 H 1.09001 * 110.72231 * 35.03706 * 10 8 7 33 33 H 1.08999 * 109.99274 * 218.66887 * 11 10 8 34 34 H 1.08998 * 109.78244 * 97.49430 * 11 10 8 35 35 H 0.97002 * 119.99308 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.36884 * 143.19416 * 21 12 11 37 37 H 1.09003 * 110.36599 * 265.40452 * 21 12 11 38 38 H 1.08997 * 109.47259 * 299.99678 * 24 23 22 39 39 H 1.09000 * 109.47261 * 60.00443 * 24 23 22 40 40 H 1.09004 * 109.47343 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.06654 * 180.27407 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2798 0.0000 4 6 1.3685 2.4893 0.0005 5 6 2.0597 3.6831 0.0011 6 6 3.4465 3.6850 0.0016 7 8 4.1233 4.8641 0.0016 8 6 3.3466 6.0579 0.1190 9 1 2.5201 5.9168 0.8155 10 6 4.2331 7.2587 0.5427 11 6 3.4730 8.4723 -0.0330 12 7 2.6156 7.9751 -1.1189 13 6 1.7615 8.7347 -1.8729 14 1 1.1754 8.2737 -2.6543 15 6 1.6487 10.0973 -1.6329 16 7 2.3625 10.6590 -0.6803 17 14 0.4830 11.1334 -2.6610 18 1 1.2026 11.6547 -3.8509 19 1 -0.6631 10.2988 -3.1021 20 1 -0.0169 12.2707 -1.8474 21 6 2.8323 6.5242 -1.2658 22 6 4.1475 2.4814 -0.0038 23 8 5.5074 2.4866 -0.0090 24 6 6.1609 1.2157 -0.0138 25 6 3.4605 1.2814 0.0010 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8660 -0.9354 -0.0004 29 1 0.2885 2.4905 0.0003 30 1 1.5195 4.6183 0.0019 31 1 4.3016 7.3234 1.6286 32 1 5.2257 7.1808 0.0991 33 1 4.1802 9.2035 -0.4244 34 1 2.8596 8.9263 0.7453 35 1 2.2834 11.6111 -0.5124 36 1 1.8957 6.0236 -1.5109 37 1 3.5791 6.3282 -2.0353 38 1 5.8736 0.6561 0.8763 39 1 5.8668 0.6593 -0.9037 40 1 7.2410 1.3625 -0.0171 41 1 4.0028 0.3474 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233570408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:15 Heat of formation + Delta-G solvation = 4.459833 kcal Electronic energy + Delta-G solvation = -22700.945873 eV Core-core repulsion = 19355.294784 eV Total energy + Delta-G solvation = -3345.651089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51562 -38.72023 -37.48874 -36.23099 -33.46835 -32.23768 -30.40752 -29.53298 -28.83311 -27.28705 -26.99154 -24.56371 -23.22005 -22.46652 -20.33809 -20.06165 -19.94897 -18.32938 -17.14741 -16.76124 -16.45384 -15.85437 -15.42703 -15.07772 -14.69941 -14.54644 -14.14346 -13.91313 -13.77060 -13.24476 -12.68476 -12.53685 -12.46330 -12.24365 -11.95671 -11.84960 -11.67823 -11.39882 -11.26538 -10.98192 -10.88332 -10.77644 -10.37810 -10.29983 -10.10684 -9.86954 -9.74569 -9.58076 -8.62901 -8.60557 -7.49261 -6.88211 -5.74113 -3.08683 0.93532 1.37802 2.48178 3.26385 3.39314 3.42300 3.45863 3.48223 3.86886 4.48457 4.59026 4.75953 4.91331 4.96131 5.05126 5.09692 5.26465 5.30736 5.32128 5.37667 5.40308 5.53555 5.55319 5.62958 5.67809 5.77083 6.07065 6.14971 6.20881 6.30754 6.39048 6.43033 6.46322 6.60029 6.65693 6.71872 6.74757 7.24128 7.51626 7.56553 7.75457 7.83696 8.21346 9.18024 9.77716 10.42554 11.37643 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003810 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.636061 B = 7347.554286 C = 8415.072159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.074 4.074 4 C -0.103 4.103 5 C -0.173 4.173 6 C 0.121 3.879 7 O -0.293 6.293 8 C 0.064 3.936 9 H 0.079 0.921 10 C -0.134 4.134 11 C 0.179 3.821 12 N -0.603 5.603 13 C -0.230 4.230 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.118 3.882 22 C 0.091 3.909 23 O -0.304 6.304 24 C 0.027 3.973 25 C -0.163 4.163 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.253 0.747 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -20.923 3.738 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.121 4.121 5 C -0.191 4.191 6 C 0.074 3.926 7 O -0.206 6.206 8 C 0.007 3.993 9 H 0.097 0.903 10 C -0.172 4.172 11 C 0.054 3.946 12 N -0.330 5.330 13 C -0.358 4.358 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.206 1.206 20 H -0.216 1.216 21 C -0.009 4.009 22 C 0.045 3.955 23 O -0.218 6.218 24 C -0.068 4.068 25 C -0.182 4.182 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.402 -20.476 3.719 20.949 hybrid contribution -0.786 0.326 -0.539 1.007 sum 1.616 -20.151 3.180 20.464 Atomic orbital electron populations 1.24332 0.95677 1.02195 1.00372 1.21694 0.95111 0.95435 1.00297 1.18690 0.92208 0.93197 1.03387 1.21013 0.99841 0.90912 1.00376 1.21239 0.92105 1.00000 1.05779 1.18435 0.90067 0.84930 0.99163 1.86197 1.35603 1.11792 1.87003 1.23863 0.94381 0.81964 0.99063 0.90285 1.23004 0.99444 0.94205 1.00545 1.21209 0.92362 0.90539 0.90482 1.44350 1.48090 1.01295 1.39314 1.19065 1.15691 0.89639 1.11449 0.90310 1.24816 0.99999 0.96606 0.98891 1.69952 1.43253 1.10727 1.32989 0.86086 0.80234 0.79980 0.79264 1.21533 1.20642 1.21612 1.21983 0.98011 0.87194 0.93677 1.18151 0.82814 0.91443 1.03053 1.86215 1.15597 1.30799 1.89193 1.23025 0.98040 0.84825 1.00905 1.21045 0.94213 0.96046 1.06847 0.87999 0.87932 0.86804 0.85406 0.83883 0.91352 0.91100 0.93267 0.93007 0.93640 0.93898 0.95222 0.92978 0.92923 0.88365 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 14.15 28.83 0.41 -1.22 16 2 C -0.11 -1.04 9.91 -37.59 -0.37 -1.41 16 3 C -0.07 -0.91 5.87 -105.01 -0.62 -1.52 16 4 C -0.10 -1.34 9.39 -39.19 -0.37 -1.71 16 5 C -0.17 -2.61 8.70 -39.52 -0.34 -2.95 16 6 C 0.12 2.01 6.65 -39.03 -0.26 1.75 16 7 O -0.29 -5.49 9.73 -34.26 -0.33 -5.82 16 8 C 0.06 1.23 2.82 -24.59 -0.07 1.16 16 9 H 0.08 1.44 6.61 -51.93 -0.34 1.09 16 10 C -0.13 -2.64 6.68 -24.89 -0.17 -2.80 16 11 C 0.18 4.38 5.38 -3.06 -0.02 4.36 16 12 N -0.60 -15.65 3.39 -170.06 -0.58 -16.23 16 13 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 14 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 15 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -26.98 10.31 55.49 0.57 -26.41 16 17 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.12 2.57 6.59 -2.53 -0.02 2.55 16 22 C 0.09 1.36 6.69 -39.18 -0.26 1.09 16 23 O -0.30 -4.43 10.27 -34.40 -0.35 -4.78 16 24 C 0.03 0.25 9.81 101.05 0.99 1.24 16 25 C -0.16 -2.00 8.77 -39.07 -0.34 -2.34 16 26 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 27 H 0.10 0.88 6.03 -52.48 -0.32 0.56 16 28 H 0.11 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.13 1.40 6.15 -52.49 -0.32 1.08 16 30 H 0.14 2.19 5.28 -52.48 -0.28 1.91 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.05 1.32 7.52 -51.93 -0.39 0.93 16 34 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.04 0.89 7.23 -51.93 -0.38 0.51 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.39 7.65 -51.93 -0.40 0.00 16 39 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.13 1.24 6.29 -52.48 -0.33 0.91 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -31.72 334.38 -7.98 -39.70 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.62 Total: 0.16 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.68 Total: -8.71 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.00 Total: -42.64 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.69 Total: -10.60 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.72 -7.98 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233570408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.159 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds