Wall clock time and date at job start Tue Mar 31 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32601 * 1 3 3 C 1.47765 * 120.00200 * 2 1 4 4 C 1.39563 * 120.07232 * 0.02562 * 3 2 1 5 5 C 1.37948 * 120.00521 * 179.72113 * 4 3 2 6 6 C 1.38685 * 120.14435 * 0.51788 * 5 4 3 7 7 O 1.35965 * 119.93226 * 179.76131 * 6 5 4 8 8 C 1.42904 * 116.99564 * 5.82719 * 7 6 5 9 9 C 1.53515 * 114.16716 * 156.77070 * 8 7 6 10 10 N 1.47471 * 87.93197 * 87.61948 * 9 8 7 11 11 C 1.46907 * 111.00186 * 138.70097 * 10 9 8 12 12 C 1.50691 * 109.47448 * 169.99935 * 11 10 9 13 13 H 1.08000 * 119.99942 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99998 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00170 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47396 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.47303 * 299.99766 * 16 14 12 19 19 H 1.48500 * 109.47681 * 59.99858 * 16 14 12 20 20 C 1.47482 * 87.83771 * 27.00977 * 10 9 8 21 21 C 1.39280 * 120.13878 * 359.48443 * 6 5 4 22 22 O 1.35999 * 120.00341 * 180.23215 * 21 6 5 23 23 C 1.42900 * 117.00032 * 179.97438 * 22 21 6 24 24 C 1.38284 * 119.99285 * 0.25765 * 21 6 5 25 25 H 1.07998 * 120.00328 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.99659 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99570 * 180.02562 * 2 1 3 28 28 H 1.08007 * 119.99305 * 359.97438 * 4 3 2 29 29 H 1.08008 * 119.92416 * 180.27756 * 5 4 3 30 30 H 1.08997 * 113.25635 * 23.81742 * 8 7 6 31 31 H 1.09007 * 113.47462 * 332.85401 * 9 8 7 32 32 H 1.08999 * 113.52461 * 202.39921 * 9 8 7 33 33 H 1.09000 * 109.46864 * 49.99824 * 11 10 9 34 34 H 1.08996 * 109.46975 * 290.00522 * 11 10 9 35 35 H 0.96995 * 120.00123 * 179.97438 * 15 14 12 36 36 H 1.08995 * 113.47540 * 87.75388 * 20 10 9 37 37 H 1.09005 * 113.47601 * 218.22110 * 20 10 9 38 38 H 1.09001 * 109.46999 * 60.00158 * 23 22 21 39 39 H 1.09001 * 109.47059 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47180 * 300.00244 * 23 22 21 41 41 H 1.08003 * 120.07062 * 179.97438 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2797 0.0000 4 6 1.3686 2.4892 0.0005 5 6 2.0598 3.6830 0.0064 6 6 3.4466 3.6849 0.0008 7 8 4.1235 4.8641 0.0017 8 6 3.3483 6.0569 0.1377 9 6 4.1330 7.2574 0.6853 10 7 4.5166 7.5720 -0.7035 11 6 4.4543 9.0186 -0.9521 12 6 5.0812 9.3263 -2.2874 13 1 5.4852 8.5272 -2.8913 14 6 5.1391 10.6280 -2.7382 15 7 4.6468 11.6010 -2.0030 16 14 5.9156 11.0094 -4.3938 17 1 5.8528 12.4716 -4.6450 18 1 7.3336 10.5680 -4.3890 19 1 5.1775 10.2917 -5.4639 20 6 3.2741 6.9071 -1.1383 21 6 4.1476 2.4813 0.0002 22 8 5.5076 2.4864 -0.0004 23 6 6.1610 1.2156 -0.0004 24 6 3.4605 1.2813 -0.0002 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8660 -0.9354 -0.0004 28 1 0.2886 2.4905 0.0005 29 1 1.5196 4.6183 0.0113 30 1 2.3871 5.8923 0.6245 31 1 4.9763 6.9741 1.3152 32 1 3.5008 8.0176 1.1440 33 1 4.9955 9.5458 -0.1664 34 1 3.4135 9.3420 -0.9561 35 1 4.6879 12.5168 -2.3200 36 1 2.4120 7.5735 -1.1665 37 1 3.3895 6.3271 -2.0540 38 1 5.8698 0.6573 -0.8902 39 1 7.2411 1.3624 -0.0015 40 1 5.8706 0.6576 0.8898 41 1 4.0028 0.3472 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233570700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:00 Heat of formation + Delta-G solvation = 22.373647 kcal Electronic energy + Delta-G solvation = -22233.122847 eV Core-core repulsion = 18888.248559 eV Total energy + Delta-G solvation = -3344.874288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71433 -39.52587 -37.80718 -36.89102 -33.52050 -32.80530 -30.52300 -29.64945 -28.70004 -27.05074 -25.58029 -25.23713 -23.35599 -22.86522 -21.37715 -20.14124 -19.50532 -18.34804 -16.82948 -16.62676 -16.33318 -15.93742 -15.54077 -15.31978 -15.00489 -14.70446 -14.41325 -14.06833 -13.69885 -13.51970 -13.34034 -12.67030 -12.55759 -12.47119 -12.02024 -11.87057 -11.81747 -11.58339 -11.43088 -11.18182 -10.93798 -10.85785 -10.49403 -10.39704 -10.19838 -9.73044 -9.61531 -9.25555 -8.70438 -8.41295 -7.82923 -7.58143 -6.01924 -4.02703 0.82804 1.26704 2.38095 3.22210 3.23201 3.36177 3.39054 3.43563 3.75315 4.44546 4.50323 4.59515 4.74304 4.78279 4.82428 4.93718 5.04592 5.05730 5.10702 5.24484 5.30375 5.33397 5.38436 5.45195 5.56411 5.80333 5.88978 5.99558 6.04612 6.06656 6.18808 6.21610 6.33515 6.33962 6.60285 6.61235 6.64339 7.13445 7.18261 7.66468 7.69595 7.87998 8.11687 8.47766 9.04978 9.61338 11.09233 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.003160 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.815984 B = 8859.967607 C = 9280.738030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.073 4.073 4 C -0.105 4.105 5 C -0.177 4.177 6 C 0.117 3.883 7 O -0.263 6.263 8 C 0.042 3.958 9 C 0.001 3.999 10 N -0.455 5.455 11 C 0.156 3.844 12 C -0.504 4.504 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.902 5.902 16 Si 0.900 3.100 17 H -0.288 1.288 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.006 4.006 21 C 0.096 3.904 22 O -0.301 6.301 23 C 0.027 3.973 24 C -0.162 4.162 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.004 0.996 35 H 0.262 0.738 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -23.074 6.762 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.125 4.125 3 C -0.073 4.073 4 C -0.123 4.123 5 C -0.195 4.195 6 C 0.070 3.930 7 O -0.175 6.175 8 C -0.015 4.015 9 C -0.129 4.129 10 N -0.178 5.178 11 C 0.030 3.970 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.728 3.272 17 H -0.214 1.214 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.135 4.135 21 C 0.051 3.949 22 O -0.214 6.214 23 C -0.068 4.068 24 C -0.181 4.181 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.985 -22.820 6.462 24.461 hybrid contribution -0.580 0.538 -0.623 1.007 sum -6.565 -22.282 5.839 23.951 Atomic orbital electron populations 1.24320 0.95654 1.02170 1.00408 1.21704 0.95123 0.95482 1.00210 1.18698 0.92217 0.93226 1.03173 1.20978 0.99745 0.90932 1.00665 1.21082 0.92035 0.99736 1.06690 1.18498 0.90110 0.85033 0.99324 1.86300 1.33939 1.10933 1.86347 1.23745 0.94590 0.83552 0.99570 1.23996 0.99246 0.93614 0.96018 1.69099 1.29905 1.15275 1.03503 1.20303 0.96267 0.82339 0.98090 1.21070 1.37789 0.92635 1.02724 0.91861 1.25002 0.95748 0.96210 0.97761 1.69942 1.46408 0.99979 1.37834 0.86525 0.79982 0.76882 0.83833 1.21354 1.20106 1.20246 1.24250 0.94881 0.96674 0.97727 1.18162 0.83063 0.91334 1.02388 1.86262 1.15371 1.30889 1.88927 1.23050 0.98235 0.84683 1.00857 1.21086 0.94222 0.96145 1.06605 0.87954 0.88006 0.86725 0.85432 0.84199 0.89688 0.89670 0.90447 0.95174 0.97855 0.92877 0.90610 0.89968 0.92881 0.88188 0.92952 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 14.15 28.83 0.41 -0.99 16 2 C -0.11 -0.92 9.91 -37.59 -0.37 -1.30 16 3 C -0.07 -0.80 5.87 -105.01 -0.62 -1.41 16 4 C -0.11 -1.17 9.39 -39.19 -0.37 -1.54 16 5 C -0.18 -2.26 9.01 -39.52 -0.36 -2.61 16 6 C 0.12 1.80 6.69 -39.03 -0.26 1.54 16 7 O -0.26 -4.72 9.96 -34.31 -0.34 -5.06 16 8 C 0.04 0.70 4.06 -26.20 -0.11 0.59 16 9 C 0.00 0.01 7.52 -7.55 -0.06 -0.05 16 10 N -0.45 -10.40 6.32 -246.13 -1.55 -11.96 16 11 C 0.16 4.16 4.57 -4.98 -0.02 4.13 16 12 C -0.50 -14.76 9.39 -34.44 -0.32 -15.08 16 13 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 16 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.01 -0.11 7.55 -7.55 -0.06 -0.17 16 21 C 0.10 1.37 6.69 -39.18 -0.26 1.11 16 22 O -0.30 -4.41 10.27 -34.42 -0.35 -4.76 16 23 C 0.03 0.25 9.81 101.05 0.99 1.24 16 24 C -0.16 -1.85 8.77 -39.07 -0.34 -2.20 16 25 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 26 H 0.10 0.72 6.03 -52.49 -0.32 0.40 16 27 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 28 H 0.13 1.12 6.15 -52.48 -0.32 0.80 16 29 H 0.14 1.58 5.87 -52.48 -0.31 1.27 16 30 H 0.09 1.12 5.90 -51.93 -0.31 0.81 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 33 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 1.39 7.42 -51.93 -0.39 1.01 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.13 1.17 6.29 -52.48 -0.33 0.84 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -33.55 342.47 -8.85 -42.40 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.63 Total: -1.32 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.84 Total: -15.26 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.82 Total: -38.38 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.70 Total: -9.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.55 -8.85 -42.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233570700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.769 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds