Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32601 * 1 3 3 C 1.47765 * 120.00200 * 2 1 4 4 C 1.39563 * 120.07232 * 0.02562 * 3 2 1 5 5 C 1.37948 * 120.00521 * 179.72113 * 4 3 2 6 6 C 1.38685 * 120.14435 * 0.51788 * 5 4 3 7 7 O 1.35965 * 119.93226 * 179.76131 * 6 5 4 8 8 C 1.42904 * 116.99564 * 5.82719 * 7 6 5 9 9 C 1.53515 * 114.16716 * 156.77070 * 8 7 6 10 10 N 1.47471 * 87.93197 * 87.61948 * 9 8 7 11 11 C 1.46907 * 111.00186 * 138.70097 * 10 9 8 12 12 C 1.50691 * 109.47448 * 169.99935 * 11 10 9 13 13 H 1.08000 * 119.99942 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99998 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00170 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47396 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.47303 * 299.99766 * 16 14 12 19 19 H 1.48500 * 109.47681 * 59.99858 * 16 14 12 20 20 C 1.47482 * 87.83771 * 27.00977 * 10 9 8 21 21 C 1.39280 * 120.13878 * 359.48443 * 6 5 4 22 22 O 1.35999 * 120.00341 * 180.23215 * 21 6 5 23 23 C 1.42900 * 117.00032 * 179.97438 * 22 21 6 24 24 C 1.38284 * 119.99285 * 0.25765 * 21 6 5 25 25 H 1.07998 * 120.00328 * 180.02562 * 1 2 3 26 26 H 1.07993 * 119.99659 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99570 * 180.02562 * 2 1 3 28 28 H 1.08007 * 119.99305 * 359.97438 * 4 3 2 29 29 H 1.08008 * 119.92416 * 180.27756 * 5 4 3 30 30 H 1.08997 * 113.25635 * 23.81742 * 8 7 6 31 31 H 1.09007 * 113.47462 * 332.85401 * 9 8 7 32 32 H 1.08999 * 113.52461 * 202.39921 * 9 8 7 33 33 H 1.09000 * 109.46864 * 49.99824 * 11 10 9 34 34 H 1.08996 * 109.46975 * 290.00522 * 11 10 9 35 35 H 0.96995 * 120.00123 * 179.97438 * 15 14 12 36 36 H 1.08995 * 113.47540 * 87.75388 * 20 10 9 37 37 H 1.09005 * 113.47601 * 218.22110 * 20 10 9 38 38 H 1.09001 * 109.46999 * 60.00158 * 23 22 21 39 39 H 1.09001 * 109.47059 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47180 * 300.00244 * 23 22 21 41 41 H 1.08003 * 120.07062 * 179.97438 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2797 0.0000 4 6 1.3686 2.4892 0.0005 5 6 2.0598 3.6830 0.0064 6 6 3.4466 3.6849 0.0008 7 8 4.1235 4.8641 0.0017 8 6 3.3483 6.0569 0.1377 9 6 4.1330 7.2574 0.6853 10 7 4.5166 7.5720 -0.7035 11 6 4.4543 9.0186 -0.9521 12 6 5.0812 9.3263 -2.2874 13 1 5.4852 8.5272 -2.8913 14 6 5.1391 10.6280 -2.7382 15 7 4.6468 11.6010 -2.0030 16 14 5.9156 11.0094 -4.3938 17 1 5.8528 12.4716 -4.6450 18 1 7.3336 10.5680 -4.3890 19 1 5.1775 10.2917 -5.4639 20 6 3.2741 6.9071 -1.1383 21 6 4.1476 2.4813 0.0002 22 8 5.5076 2.4864 -0.0004 23 6 6.1610 1.2156 -0.0004 24 6 3.4605 1.2813 -0.0002 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8660 -0.9354 -0.0004 28 1 0.2886 2.4905 0.0005 29 1 1.5196 4.6183 0.0113 30 1 2.3871 5.8923 0.6245 31 1 4.9763 6.9741 1.3152 32 1 3.5008 8.0176 1.1440 33 1 4.9955 9.5458 -0.1664 34 1 3.4135 9.3420 -0.9561 35 1 4.6879 12.5168 -2.3200 36 1 2.4120 7.5735 -1.1665 37 1 3.3895 6.3271 -2.0540 38 1 5.8698 0.6573 -0.8902 39 1 7.2411 1.3624 -0.0015 40 1 5.8706 0.6576 0.8898 41 1 4.0028 0.3472 -0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233570700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = -0.449360 kcal Electronic energy + Delta-G solvation = -22234.112527 eV Core-core repulsion = 18888.248559 eV Total energy + Delta-G solvation = -3345.863968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84971 -40.79110 -38.85048 -38.02366 -35.05910 -34.23475 -31.48980 -31.23778 -29.79174 -27.84815 -27.36479 -26.85016 -24.29094 -24.17480 -22.97545 -20.98087 -20.72074 -19.44668 -18.55440 -17.78734 -17.60337 -17.13298 -16.80218 -16.33548 -16.22127 -16.18372 -15.80183 -15.25563 -14.94910 -14.84550 -14.57115 -13.99508 -13.71820 -13.62168 -13.35702 -13.29834 -12.98124 -12.80875 -12.60673 -12.43331 -12.31369 -12.20184 -12.15271 -11.75057 -11.59961 -11.45660 -11.28439 -10.64224 -10.60592 -9.60379 -9.56892 -8.54460 -8.24981 -6.35059 -0.01064 0.36141 1.37527 1.41104 1.49464 1.64376 2.07156 2.37816 2.39138 2.86771 3.06691 3.31480 3.32347 3.70154 3.77003 3.92489 3.97855 4.19431 4.26453 4.33325 4.40482 4.42008 4.46158 4.50116 4.58559 4.59843 4.69162 4.72409 4.81049 4.88455 4.92495 5.02483 5.15525 5.31045 5.34309 5.55642 5.66666 5.76403 5.76966 5.91959 6.05611 6.18993 6.44111 6.66798 6.78295 7.34253 8.85828 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.003160 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.815984 B = 8859.967607 C = 9280.738030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.066 4.066 4 C -0.113 4.113 5 C -0.174 4.174 6 C 0.073 3.927 7 O -0.294 6.294 8 C 0.069 3.931 9 C -0.001 4.001 10 N -0.488 5.488 11 C 0.172 3.828 12 C -0.530 4.530 13 H 0.051 0.949 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.969 3.031 17 H -0.276 1.276 18 H -0.271 1.271 19 H -0.268 1.268 20 C -0.008 4.008 21 C 0.079 3.921 22 O -0.338 6.338 23 C 0.018 3.982 24 C -0.163 4.163 25 H 0.123 0.877 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.003 0.997 34 H -0.010 1.010 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -25.373 6.500 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.067 4.067 4 C -0.131 4.131 5 C -0.192 4.192 6 C 0.027 3.973 7 O -0.208 6.208 8 C 0.012 3.988 9 C -0.130 4.130 10 N -0.211 5.211 11 C 0.045 3.955 12 C -0.569 4.569 13 H 0.070 0.930 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.793 3.207 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.193 1.193 20 C -0.137 4.137 21 C 0.034 3.966 22 O -0.252 6.252 23 C -0.076 4.076 24 C -0.181 4.181 25 H 0.142 0.858 26 H 0.123 0.877 27 H 0.150 0.850 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.021 0.979 34 H 0.008 0.992 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.484 -25.152 6.210 26.967 hybrid contribution -0.197 1.065 -0.500 1.193 sum -7.681 -24.087 5.710 25.919 Atomic orbital electron populations 1.24625 0.95336 1.03440 0.97276 1.21814 0.95670 0.94973 1.02293 1.19106 0.92263 0.94421 1.00894 1.21308 1.01060 0.90432 1.00267 1.21257 0.91104 1.01003 1.05874 1.18880 0.91340 0.84409 1.02640 1.86238 1.35259 1.11928 1.87358 1.23496 0.95512 0.82796 0.97024 1.24067 0.99944 0.95120 0.93872 1.69001 1.32587 1.12557 1.06946 1.19969 0.94553 0.84776 0.96159 1.21371 1.38612 0.92888 1.03982 0.93029 1.25890 0.95963 0.95845 1.01700 1.70046 1.47052 1.00430 1.39615 0.85446 0.79021 0.77183 0.79034 1.20142 1.19663 1.19295 1.24276 0.93564 0.96989 0.98888 1.18489 0.83233 0.92004 1.02911 1.86201 1.15953 1.33859 1.89208 1.23332 0.98564 0.83327 1.02348 1.21370 0.94708 0.96117 1.05923 0.85840 0.87654 0.84998 0.82896 0.83106 0.85781 0.89809 0.88886 0.97886 0.99230 0.92455 0.89784 0.91139 0.91554 0.87160 0.91139 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 14.15 66.66 0.94 -0.90 16 2 C -0.13 -1.79 9.91 23.63 0.23 -1.56 16 3 C -0.07 -1.30 5.87 -20.12 -0.12 -1.42 16 4 C -0.11 -2.25 9.39 22.52 0.21 -2.04 16 5 C -0.17 -4.23 9.01 22.31 0.20 -4.03 16 6 C 0.07 2.24 6.69 22.63 0.15 2.39 16 7 O -0.29 -10.81 9.96 -79.12 -0.79 -11.60 16 8 C 0.07 2.25 4.06 30.94 0.13 2.37 16 9 C 0.00 -0.04 7.52 83.58 0.63 0.59 16 10 N -0.49 -23.14 6.32 -933.00 -5.89 -29.03 16 11 C 0.17 9.56 4.57 85.55 0.39 9.95 16 12 C -0.53 -32.04 9.39 25.60 0.24 -31.80 16 13 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 14 C 0.00 0.25 5.46 84.65 0.46 0.72 16 15 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 16 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.01 -0.30 7.55 83.57 0.63 0.33 16 21 C 0.08 2.26 6.69 22.53 0.15 2.41 16 22 O -0.34 -10.07 10.27 -79.50 -0.82 -10.88 16 23 C 0.02 0.32 9.81 113.37 1.11 1.44 16 24 C -0.16 -3.48 8.77 22.60 0.20 -3.28 16 25 H 0.12 0.84 8.06 -2.91 -0.02 0.82 16 26 H 0.11 1.06 6.03 -2.91 -0.02 1.04 16 27 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 28 H 0.15 2.17 6.15 -2.91 -0.02 2.16 16 29 H 0.15 3.14 5.87 -2.91 -0.02 3.12 16 30 H 0.12 3.06 5.90 -2.39 -0.01 3.04 16 31 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 32 H 0.09 3.16 7.91 -2.39 -0.02 3.14 16 33 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 34 H -0.01 -0.57 7.30 -2.39 -0.02 -0.59 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.08 3.12 7.42 -2.39 -0.02 3.11 16 37 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.07 0.95 7.66 -2.39 -0.02 0.94 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 41 H 0.16 2.41 6.29 -2.91 -0.02 2.39 16 Total: -1.00 -74.96 342.47 1.40 -73.56 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.03 Total: 11.44 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 5.56 Total: -24.83 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -5.61 Total: -85.70 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.60 Total: -22.48 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.96 1.40 -73.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233570700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.108 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds