Wall clock time and date at job start Tue Mar 31 2020 06:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35521 * 116.99743 * 2 1 4 4 C 1.39149 * 120.46634 * 0.26107 * 3 2 1 5 5 C 1.38269 * 118.65423 * 180.24806 * 4 3 2 6 6 C 1.40272 * 119.56138 * 359.73671 * 5 4 3 7 7 C 1.47630 * 119.53960 * 179.97438 * 6 5 4 8 8 C 1.31267 * 118.08663 * 174.48245 * 7 6 5 9 9 C 1.50103 * 123.82390 * 179.29625 * 8 7 6 10 10 C 1.53010 * 110.07729 * 17.64881 * 9 8 7 11 11 H 1.09002 * 109.63196 * 69.78733 * 10 9 8 12 12 O 1.42904 * 109.79406 * 190.28436 * 10 9 8 13 13 C 1.42891 * 114.00050 * 269.10323 * 12 10 9 14 14 C 1.53365 * 108.49636 * 310.08440 * 10 9 8 15 15 C 1.50100 * 118.08429 * 354.74133 * 7 6 5 16 16 N 1.32346 * 120.92312 * 0.02562 * 6 5 4 17 17 C 1.33550 * 121.44253 * 0.02562 * 16 6 5 18 18 C 1.40986 * 119.82375 * 179.97438 * 17 16 6 19 19 H 1.07992 * 119.99773 * 179.97438 * 18 17 16 20 20 C 1.40021 * 119.99961 * 359.72660 * 18 17 16 21 21 N 1.30784 * 119.99695 * 0.26851 * 20 18 17 22 22 Si 1.86796 * 119.99896 * 180.27442 * 20 18 17 23 23 H 1.48496 * 109.47147 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47242 * 119.99684 * 22 20 18 25 25 H 1.48501 * 109.47065 * 239.99496 * 22 20 18 26 26 H 1.08992 * 109.47169 * 60.00393 * 1 2 3 27 27 H 1.09002 * 109.46304 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47115 * 299.99378 * 1 2 3 29 29 H 1.08001 * 120.67028 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.21468 * 179.72210 * 5 4 3 31 31 H 1.07996 * 118.08982 * 359.56987 * 8 7 6 32 32 H 1.09000 * 109.55722 * 257.35716 * 9 8 7 33 33 H 1.09007 * 109.10837 * 137.65943 * 9 8 7 34 34 H 1.09001 * 109.47594 * 300.00508 * 13 12 10 35 35 H 1.09000 * 109.47262 * 60.00620 * 13 12 10 36 36 H 1.08996 * 109.47131 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.63361 * 308.25415 * 14 10 9 38 38 H 1.09005 * 109.62688 * 187.65671 * 14 10 9 39 39 H 1.08997 * 109.35893 * 317.37354 * 15 7 6 40 40 H 1.08998 * 109.35594 * 77.09683 * 15 7 6 41 41 H 0.97004 * 119.99381 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.2958 2.3806 0.0055 5 6 1.9621 3.5922 0.0000 6 6 3.3647 3.6106 -0.0052 7 6 4.0756 4.9044 -0.0116 8 6 5.3839 4.8913 0.0950 9 6 6.2353 6.1275 0.0874 10 6 5.3757 7.3591 0.3798 11 1 5.0484 7.3389 1.4193 12 8 6.1331 8.5465 0.1378 13 6 6.8344 9.0322 1.2842 14 6 4.1532 7.3301 -0.5459 15 6 3.2597 6.1584 -0.1336 16 7 4.0597 2.4843 -0.0055 17 6 3.4558 1.2931 -0.0013 18 6 4.2298 0.1147 -0.0023 19 1 3.7444 -0.8500 0.0014 20 6 5.6276 0.1951 -0.0134 21 7 6.2153 1.3635 -0.0176 22 14 6.6530 -1.3663 -0.0225 23 1 5.7545 -2.5485 -0.0154 24 1 7.5001 -1.3951 -1.2418 25 1 7.5195 -1.3964 1.1831 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 0.2164 2.3455 0.0094 30 1 1.4062 4.5182 -0.0005 31 1 5.8768 3.9351 0.1894 32 1 6.7071 6.2396 -0.8887 33 1 7.0059 6.0347 0.8528 34 1 6.1215 9.2613 2.0762 35 1 7.5324 8.2710 1.6327 36 1 7.3840 9.9351 1.0182 37 1 4.4782 7.1974 -1.5777 38 1 3.5995 8.2641 -0.4505 39 1 2.4843 6.0132 -0.8857 40 1 2.7946 6.3816 0.8265 41 1 7.1837 1.4192 -0.0256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243804185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:21 Heat of formation + Delta-G solvation = -43.528496 kcal Electronic energy + Delta-G solvation = -22929.277206 eV Core-core repulsion = 19581.545186 eV Total energy + Delta-G solvation = -3347.732019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.23757 -38.63314 -37.02346 -35.73157 -33.61592 -30.98177 -30.74198 -29.99855 -28.38947 -26.67470 -26.29182 -25.25362 -23.01291 -22.12570 -21.04648 -20.48090 -17.60025 -17.40964 -16.65874 -16.47584 -15.83232 -15.25881 -14.83301 -14.75172 -14.72098 -14.42153 -13.58464 -13.21062 -13.08784 -12.91862 -12.63759 -12.43633 -12.32023 -12.00938 -11.87021 -11.71175 -11.32300 -11.23011 -11.20853 -10.71594 -10.63657 -10.48901 -10.44499 -10.35837 -10.17695 -9.73246 -9.44551 -9.24479 -8.41803 -8.08324 -7.70692 -6.80701 -6.43329 -4.38725 2.24554 2.83593 3.11736 3.13902 3.17322 3.57250 3.84001 3.97629 4.43332 4.80171 5.01251 5.05579 5.27033 5.33356 5.41834 5.57262 5.58258 5.69161 5.70754 5.72260 5.73904 5.83192 5.92612 5.95221 6.04225 6.12444 6.18724 6.23084 6.27951 6.32180 6.47620 6.51597 6.75775 6.93711 7.18921 7.30488 7.39748 7.48496 7.64090 7.78013 8.02752 8.22628 8.32830 8.72272 9.02276 10.03857 10.30821 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.005103 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.315088 B = 5485.572591 C = 7253.123161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C -0.034 4.034 4 C -0.147 4.147 5 C -0.276 4.276 6 C 0.151 3.849 7 C -0.081 4.081 8 C -0.134 4.134 9 C -0.105 4.105 10 C 0.087 3.913 11 H 0.061 0.939 12 O -0.389 6.389 13 C 0.032 3.968 14 C -0.111 4.111 15 C -0.072 4.072 16 N -0.455 5.455 17 C 0.255 3.745 18 C -0.414 4.414 19 H 0.090 0.910 20 C 0.068 3.932 21 N -0.718 5.718 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 8.289 1.530 8.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.223 6.223 3 C -0.082 4.082 4 C -0.171 4.171 5 C -0.300 4.300 6 C 0.010 3.990 7 C -0.082 4.082 8 C -0.154 4.154 9 C -0.142 4.142 10 C 0.029 3.971 11 H 0.079 0.921 12 O -0.308 6.308 13 C -0.065 4.065 14 C -0.149 4.149 15 C -0.109 4.109 16 N -0.169 5.169 17 C 0.127 3.873 18 C -0.446 4.446 19 H 0.108 0.892 20 C -0.156 4.156 21 N -0.341 5.341 22 Si 0.733 3.267 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.169 0.831 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.280 8.272 1.348 8.386 hybrid contribution -0.844 -0.611 0.314 1.088 sum -1.123 7.662 1.662 7.920 Atomic orbital electron populations 1.22744 0.81801 1.01811 0.99883 1.85934 1.18236 1.27942 1.90147 1.20351 0.93694 0.83179 1.11025 1.20874 0.97636 0.92773 1.05840 1.21060 0.94411 0.96060 1.18455 1.19922 0.89531 0.92642 0.96900 1.19424 0.93652 0.91781 1.03368 1.22849 0.94639 0.99416 0.98475 1.20930 0.98156 0.92881 1.02281 1.22294 0.91590 0.84208 0.98958 0.92060 1.87880 1.65078 1.43135 1.34684 1.22735 0.95906 0.99012 0.88861 1.21647 0.94943 0.98372 0.99891 1.20295 0.97451 0.91594 1.01588 1.68929 1.34710 0.95314 1.17987 1.18137 0.84973 0.92163 0.92064 1.19550 0.90598 0.93047 1.41441 0.89177 1.26039 0.98671 0.97225 0.93670 1.70095 1.10238 1.24493 1.29241 0.86249 0.79776 0.82255 0.78447 1.18357 1.19891 1.19916 0.94229 0.89925 0.94251 0.88044 0.88369 0.83095 0.90323 0.91566 0.94316 0.94072 0.90077 0.91076 0.91451 0.90514 0.91384 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.83 101.05 0.99 1.57 16 2 O -0.31 -7.13 9.60 -18.26 -0.18 -7.31 16 3 C -0.03 -0.86 6.74 -38.03 -0.26 -1.12 16 4 C -0.15 -3.34 9.11 -39.23 -0.36 -3.70 16 5 C -0.28 -6.24 9.30 -38.81 -0.36 -6.60 16 6 C 0.15 3.66 6.69 -83.05 -0.56 3.10 16 7 C -0.08 -1.66 5.79 -102.87 -0.60 -2.26 16 8 C -0.13 -2.69 9.39 -36.38 -0.34 -3.03 16 9 C -0.11 -1.70 5.76 -28.17 -0.16 -1.86 16 10 C 0.09 1.27 2.65 -26.54 -0.07 1.20 16 11 H 0.06 0.87 7.77 -51.93 -0.40 0.47 16 12 O -0.39 -5.48 10.37 -35.23 -0.37 -5.84 16 13 C 0.03 0.34 10.83 101.05 1.09 1.43 16 14 C -0.11 -1.60 5.66 -26.54 -0.15 -1.75 16 15 C -0.07 -1.16 4.77 -28.17 -0.13 -1.30 16 16 N -0.45 -12.31 6.52 -7.67 -0.05 -12.36 16 17 C 0.25 7.04 6.56 -84.87 -0.56 6.49 16 18 C -0.41 -11.26 8.94 -37.87 -0.34 -11.60 16 19 H 0.09 2.39 7.31 -52.49 -0.38 2.01 16 20 C 0.07 1.73 5.50 -17.33 -0.10 1.64 16 21 N -0.72 -18.52 10.83 55.55 0.60 -17.92 16 22 Si 0.91 18.75 29.56 -169.99 -5.02 13.73 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 26 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 29 H 0.10 1.98 6.43 -52.49 -0.34 1.64 16 30 H 0.10 1.93 6.60 -52.48 -0.35 1.58 16 31 H 0.15 3.53 6.40 -52.49 -0.34 3.19 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 34 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.22 7.22 -51.93 -0.37 0.84 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.27 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -29.70 334.31 -7.78 -37.48 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.91 Total: 4.98 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.89 Total: -17.80 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.55 Total: -30.28 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.54 Total: -13.15 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.70 -7.78 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243804185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.048 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds