Wall clock time and date at job start Tue Mar 31 2020 06:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35521 * 116.99743 * 2 1 4 4 C 1.39149 * 120.46634 * 0.26107 * 3 2 1 5 5 C 1.38269 * 118.65423 * 180.24806 * 4 3 2 6 6 C 1.40272 * 119.56138 * 359.73671 * 5 4 3 7 7 C 1.47630 * 119.53960 * 179.97438 * 6 5 4 8 8 C 1.31267 * 118.08663 * 174.48245 * 7 6 5 9 9 C 1.50103 * 123.82390 * 179.29625 * 8 7 6 10 10 C 1.53010 * 110.07729 * 17.64881 * 9 8 7 11 11 H 1.09002 * 109.63196 * 69.78733 * 10 9 8 12 12 O 1.42904 * 109.79406 * 190.28436 * 10 9 8 13 13 C 1.42891 * 114.00050 * 269.10323 * 12 10 9 14 14 C 1.53365 * 108.49636 * 310.08440 * 10 9 8 15 15 C 1.50100 * 118.08429 * 354.74133 * 7 6 5 16 16 N 1.32346 * 120.92312 * 0.02562 * 6 5 4 17 17 C 1.33550 * 121.44253 * 0.02562 * 16 6 5 18 18 C 1.40986 * 119.82375 * 179.97438 * 17 16 6 19 19 H 1.07992 * 119.99773 * 179.97438 * 18 17 16 20 20 C 1.40021 * 119.99961 * 359.72660 * 18 17 16 21 21 N 1.30784 * 119.99695 * 0.26851 * 20 18 17 22 22 Si 1.86796 * 119.99896 * 180.27442 * 20 18 17 23 23 H 1.48496 * 109.47147 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47242 * 119.99684 * 22 20 18 25 25 H 1.48501 * 109.47065 * 239.99496 * 22 20 18 26 26 H 1.08992 * 109.47169 * 60.00393 * 1 2 3 27 27 H 1.09002 * 109.46304 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47115 * 299.99378 * 1 2 3 29 29 H 1.08001 * 120.67028 * 359.97438 * 4 3 2 30 30 H 1.08004 * 120.21468 * 179.72210 * 5 4 3 31 31 H 1.07996 * 118.08982 * 359.56987 * 8 7 6 32 32 H 1.09000 * 109.55722 * 257.35716 * 9 8 7 33 33 H 1.09007 * 109.10837 * 137.65943 * 9 8 7 34 34 H 1.09001 * 109.47594 * 300.00508 * 13 12 10 35 35 H 1.09000 * 109.47262 * 60.00620 * 13 12 10 36 36 H 1.08996 * 109.47131 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.63361 * 308.25415 * 14 10 9 38 38 H 1.09005 * 109.62688 * 187.65671 * 14 10 9 39 39 H 1.08997 * 109.35893 * 317.37354 * 15 7 6 40 40 H 1.08998 * 109.35594 * 77.09683 * 15 7 6 41 41 H 0.97004 * 119.99381 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.2958 2.3806 0.0055 5 6 1.9621 3.5922 0.0000 6 6 3.3647 3.6106 -0.0052 7 6 4.0756 4.9044 -0.0116 8 6 5.3839 4.8913 0.0950 9 6 6.2353 6.1275 0.0874 10 6 5.3757 7.3591 0.3798 11 1 5.0484 7.3389 1.4193 12 8 6.1331 8.5465 0.1378 13 6 6.8344 9.0322 1.2842 14 6 4.1532 7.3301 -0.5459 15 6 3.2597 6.1584 -0.1336 16 7 4.0597 2.4843 -0.0055 17 6 3.4558 1.2931 -0.0013 18 6 4.2298 0.1147 -0.0023 19 1 3.7444 -0.8500 0.0014 20 6 5.6276 0.1951 -0.0134 21 7 6.2153 1.3635 -0.0176 22 14 6.6530 -1.3663 -0.0225 23 1 5.7545 -2.5485 -0.0154 24 1 7.5001 -1.3951 -1.2418 25 1 7.5195 -1.3964 1.1831 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 0.2164 2.3455 0.0094 30 1 1.4062 4.5182 -0.0005 31 1 5.8768 3.9351 0.1894 32 1 6.7071 6.2396 -0.8887 33 1 7.0059 6.0347 0.8528 34 1 6.1215 9.2613 2.0762 35 1 7.5324 8.2710 1.6327 36 1 7.3840 9.9351 1.0182 37 1 4.4782 7.1974 -1.5777 38 1 3.5995 8.2641 -0.4505 39 1 2.4843 6.0132 -0.8857 40 1 2.7946 6.3816 0.8265 41 1 7.1837 1.4192 -0.0256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243804185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:20 Heat of formation + Delta-G solvation = -60.794072 kcal Electronic energy + Delta-G solvation = -22930.025897 eV Core-core repulsion = 19581.545186 eV Total energy + Delta-G solvation = -3348.480711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85629 -40.01660 -38.58021 -37.13857 -35.45367 -32.50021 -32.45790 -31.48809 -29.94267 -28.08776 -27.55020 -26.85513 -24.39290 -23.65804 -22.75202 -21.98877 -19.38678 -18.90256 -18.38677 -17.68848 -17.38978 -16.72371 -16.37551 -16.33137 -16.03681 -15.58904 -15.02491 -14.80612 -14.65506 -14.25520 -14.13804 -14.05942 -13.73677 -13.45571 -13.15619 -13.00840 -12.92608 -12.84735 -12.64623 -12.37555 -12.11115 -11.99162 -11.88918 -11.66273 -11.54577 -11.35361 -11.25351 -10.40466 -10.07296 -9.91082 -9.56704 -8.60254 -8.28812 -6.34782 0.49792 1.02425 1.40200 1.46099 1.55166 1.87346 2.24673 2.82509 2.85299 2.92529 3.74308 3.87768 3.93334 3.99419 4.18047 4.28994 4.36609 4.39076 4.44803 4.46623 4.54520 4.57378 4.58375 4.66671 4.71723 4.81758 4.86865 4.90402 4.94609 5.00006 5.02924 5.11368 5.24159 5.32336 5.32780 5.58963 5.68945 5.94664 6.04551 6.28681 6.32948 6.39442 6.47719 6.82729 7.17115 8.15845 8.46724 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.005103 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.315088 B = 5485.572591 C = 7253.123161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C -0.053 4.053 4 C -0.147 4.147 5 C -0.269 4.269 6 C 0.121 3.879 7 C -0.092 4.092 8 C -0.138 4.138 9 C -0.098 4.098 10 C 0.094 3.906 11 H 0.069 0.931 12 O -0.401 6.401 13 C 0.023 3.977 14 C -0.105 4.105 15 C -0.064 4.064 16 N -0.481 5.481 17 C 0.215 3.785 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.026 3.974 21 N -0.749 5.749 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.266 1.266 25 H -0.265 1.265 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 9.871 1.789 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C -0.101 4.101 4 C -0.172 4.172 5 C -0.292 4.292 6 C -0.020 4.020 7 C -0.093 4.093 8 C -0.158 4.158 9 C -0.135 4.135 10 C 0.036 3.964 11 H 0.087 0.913 12 O -0.320 6.320 13 C -0.073 4.073 14 C -0.143 4.143 15 C -0.101 4.101 16 N -0.196 5.196 17 C 0.086 3.914 18 C -0.487 4.487 19 H 0.099 0.901 20 C -0.195 4.195 21 N -0.372 5.372 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.190 1.190 25 H -0.189 1.189 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.232 9.879 1.610 10.084 hybrid contribution -0.675 -1.044 0.250 1.268 sum -1.907 8.835 1.860 9.228 Atomic orbital electron populations 1.23104 0.78608 1.04340 1.00921 1.85875 1.21549 1.27316 1.90162 1.20427 0.93472 0.84750 1.11434 1.21278 0.99390 0.91958 1.04527 1.21504 0.94089 0.97514 1.16048 1.20670 0.90964 0.93425 0.96906 1.19746 0.94021 0.92016 1.03471 1.22811 0.95089 0.99570 0.98316 1.20874 0.97975 0.92181 1.02494 1.22151 0.91270 0.83631 0.99344 0.91341 1.87861 1.65307 1.42447 1.36375 1.22977 0.96198 0.99768 0.88362 1.21603 0.94801 0.98585 0.99275 1.20290 0.97222 0.89977 1.02623 1.68896 1.36099 0.96021 1.18597 1.18590 0.86816 0.92761 0.93185 1.19712 0.91972 0.92828 1.44177 0.90069 1.26860 0.99144 1.00643 0.92857 1.70191 1.10755 1.26395 1.29870 0.85140 0.77831 0.77785 0.78833 1.18373 1.19039 1.18946 0.93060 0.86867 0.93040 0.84519 0.84888 0.87010 0.90426 0.90807 0.93068 0.93967 0.88077 0.91832 0.88868 0.89948 0.89812 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.83 113.37 1.11 1.93 16 2 O -0.34 -15.61 9.60 -88.24 -0.85 -16.46 16 3 C -0.05 -2.70 6.74 23.27 0.16 -2.55 16 4 C -0.15 -6.55 9.11 22.50 0.20 -6.34 16 5 C -0.27 -11.82 9.30 22.77 0.21 -11.61 16 6 C 0.12 5.93 6.69 42.04 0.28 6.22 16 7 C -0.09 -3.74 5.79 -17.87 -0.10 -3.84 16 8 C -0.14 -5.65 9.39 25.20 0.24 -5.42 16 9 C -0.10 -3.13 5.76 29.66 0.17 -2.95 16 10 C 0.09 2.54 2.65 30.72 0.08 2.62 16 11 H 0.07 1.76 7.77 -2.39 -0.02 1.75 16 12 O -0.40 -10.26 10.37 -148.98 -1.55 -11.81 16 13 C 0.02 0.43 10.83 113.37 1.23 1.66 16 14 C -0.11 -2.75 5.66 30.72 0.17 -2.58 16 15 C -0.06 -1.92 4.77 29.66 0.14 -1.78 16 16 N -0.48 -27.22 6.52 -178.18 -1.16 -28.38 16 17 C 0.21 12.44 6.56 40.34 0.26 12.70 16 18 C -0.45 -26.06 8.94 23.38 0.21 -25.85 16 19 H 0.08 4.58 7.31 -2.91 -0.02 4.56 16 20 C 0.03 1.38 5.50 85.28 0.47 1.85 16 21 N -0.75 -40.62 10.83 21.84 0.24 -40.39 16 22 Si 0.98 39.87 29.56 68.60 2.03 41.90 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 H 0.05 1.51 7.70 -2.39 -0.02 1.49 16 27 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.05 1.51 7.68 -2.39 -0.02 1.49 16 29 H 0.14 4.96 6.43 -2.91 -0.02 4.94 16 30 H 0.13 4.81 6.60 -2.91 -0.02 4.79 16 31 H 0.11 5.54 6.40 -2.91 -0.02 5.53 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 38 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.08 2.38 7.22 -2.39 -0.02 2.37 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.28 13.57 8.30 -92.71 -0.77 12.80 16 Total: -1.00 -68.28 334.31 4.58 -63.70 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.03 Total: 27.39 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 4.84 Total: -35.95 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.93 Total: -68.77 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -2.39 Total: -28.27 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -68.28 4.58 -63.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243804185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.907 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds