Wall clock time and date at job start Tue Mar 31 2020 07:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99974 * 2 1 4 4 H 1.09000 * 109.46758 * 120.00735 * 3 2 1 5 5 C 1.53003 * 109.47258 * 240.00390 * 3 2 1 6 6 O 1.42893 * 109.47129 * 54.99868 * 5 3 2 7 7 C 1.42900 * 114.00227 * 179.97438 * 6 5 3 8 8 N 1.46494 * 109.47242 * 0.02562 * 3 2 1 9 9 C 1.34774 * 120.00112 * 85.00214 * 8 3 2 10 10 O 1.21276 * 120.00336 * 359.97438 * 9 8 3 11 11 C 1.50704 * 119.99873 * 180.02562 * 9 8 3 12 12 C 1.50708 * 109.47082 * 179.97438 * 11 9 8 13 13 C 1.37645 * 120.12474 * 265.00047 * 12 11 9 14 14 C 1.38607 * 120.24413 * 179.97438 * 13 12 11 15 15 C 1.38659 * 120.50531 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.24554 * 0.02562 * 15 14 13 17 17 C 1.40687 * 120.12679 * 84.72379 * 12 11 9 18 18 C 1.41399 * 120.24776 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99880 * 329.70406 * 18 17 12 20 20 C 1.39940 * 119.99991 * 149.70147 * 18 17 12 21 21 N 1.30822 * 119.99857 * 162.01376 * 20 18 17 22 22 Si 1.86804 * 120.00161 * 342.01903 * 20 18 17 23 23 H 1.48502 * 109.47030 * 95.40101 * 22 20 18 24 24 H 1.48503 * 109.46745 * 215.39940 * 22 20 18 25 25 H 1.48495 * 109.46718 * 335.39879 * 22 20 18 26 26 H 1.08000 * 119.99900 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00406 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99900 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46774 * 295.00250 * 5 3 2 30 30 H 1.09000 * 109.47228 * 175.00167 * 5 3 2 31 31 H 1.09002 * 109.47472 * 300.00962 * 7 6 5 32 32 H 1.09007 * 109.46850 * 60.00136 * 7 6 5 33 33 H 1.08998 * 109.47629 * 180.02562 * 7 6 5 34 34 H 0.97003 * 119.99929 * 264.99232 * 8 3 2 35 35 H 1.08997 * 109.46981 * 299.99379 * 11 9 8 36 36 H 1.08994 * 109.47261 * 59.99706 * 11 9 8 37 37 H 1.07997 * 119.87558 * 0.02562 * 13 12 11 38 38 H 1.08006 * 119.74789 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.87321 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.12717 * 179.97438 * 16 15 14 41 41 H 0.97008 * 120.00379 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6902 1.3627 0.8899 5 6 2.9430 1.3862 -1.2493 6 8 2.1364 1.1940 -2.4130 7 6 2.8647 1.2519 -3.6411 8 7 1.1115 2.4186 0.0006 9 6 0.5968 2.8645 1.1636 10 8 0.9213 2.3436 2.2097 11 6 -0.3830 4.0096 1.1642 12 6 -0.8034 4.3104 2.5798 13 6 -1.9551 3.7565 3.0909 14 6 -2.3438 4.0310 4.3927 15 6 -1.5797 4.8653 5.1944 16 6 -0.4251 5.4308 4.7040 17 6 -0.0170 5.1537 3.3859 18 6 1.1715 5.7233 2.8737 19 1 1.7434 5.1965 2.1241 20 6 1.6068 6.9696 3.3380 21 7 2.8469 7.3411 3.1497 22 14 0.4170 8.1028 4.2268 23 1 0.5556 7.9141 5.6933 24 1 0.7230 9.5135 3.8781 25 1 -0.9732 7.7815 3.8156 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.7084 0.6113 -1.2057 30 1 3.4196 2.3654 -1.2952 31 1 3.3394 2.2285 -3.7365 32 1 3.6288 0.4745 -3.6474 33 1 2.1817 1.0972 -4.4764 34 1 0.8518 2.8351 -0.8361 35 1 0.0883 4.8911 0.7297 36 1 -1.2591 3.7384 0.5752 37 1 -2.5578 3.1049 2.4755 38 1 -3.2493 3.5924 4.7855 39 1 -1.8923 5.0726 6.2071 40 1 0.1684 6.0807 5.3299 41 1 3.1486 8.2052 3.4712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320595720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:51 Heat of formation + Delta-G solvation = -41.298586 kcal Electronic energy + Delta-G solvation = -22981.268112 eV Core-core repulsion = 19633.632789 eV Total energy + Delta-G solvation = -3347.635323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.62766 -38.19390 -37.42123 -35.29929 -33.53311 -32.17547 -31.41454 -30.26452 -29.45842 -26.97319 -26.22517 -24.77153 -22.96510 -21.38943 -20.80206 -19.35128 -19.17302 -17.29562 -16.86222 -16.52842 -16.11469 -15.67236 -15.52572 -15.18599 -14.45346 -14.34143 -14.21251 -13.68311 -13.30599 -13.14763 -12.63637 -12.56722 -12.29379 -12.15334 -12.01346 -11.81917 -11.50029 -11.34957 -11.10599 -10.86007 -10.75381 -10.67361 -10.20011 -9.84802 -9.65561 -9.50570 -9.12415 -9.11491 -9.06966 -8.69987 -7.53409 -7.43921 -6.88612 -4.41993 2.55017 2.62445 2.77769 3.16350 3.24204 3.36193 3.38810 3.56303 3.76604 4.03512 4.57616 4.86667 4.95643 5.14315 5.22044 5.28595 5.37371 5.44503 5.47356 5.52973 5.64629 5.80421 5.94966 6.06046 6.13766 6.15525 6.25264 6.35568 6.64404 6.71186 6.78345 6.81274 6.96155 7.01302 7.14457 7.26698 7.49463 7.72592 7.80885 7.96529 8.04445 8.20874 8.41971 8.74769 8.88378 8.93399 10.13732 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.004821 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.113755 B = 5806.082153 C = 6894.721718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.107 0.893 5 C 0.058 3.942 6 O -0.384 6.384 7 C 0.031 3.969 8 N -0.734 5.734 9 C 0.517 3.483 10 O -0.518 6.518 11 C -0.075 4.075 12 C -0.164 4.164 13 C -0.069 4.069 14 C -0.241 4.241 15 C -0.081 4.081 16 C -0.234 4.234 17 C 0.110 3.890 18 C -0.444 4.444 19 H 0.089 0.911 20 C 0.085 3.915 21 N -0.812 5.812 22 Si 0.909 3.091 23 H -0.272 1.272 24 H -0.293 1.293 25 H -0.244 1.244 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.401 0.599 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -8.128 -11.148 13.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.072 3.928 4 H 0.125 0.875 5 C -0.019 4.019 6 O -0.302 6.302 7 C -0.065 4.065 8 N -0.389 5.389 9 C 0.304 3.696 10 O -0.391 6.391 11 C -0.114 4.114 12 C -0.166 4.166 13 C -0.087 4.087 14 C -0.261 4.261 15 C -0.099 4.099 16 C -0.253 4.253 17 C 0.107 3.893 18 C -0.473 4.473 19 H 0.107 0.893 20 C -0.133 4.133 21 N -0.436 5.436 22 Si 0.736 3.264 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.167 1.167 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.546 -8.366 -10.362 13.329 hybrid contribution -0.028 0.691 0.006 0.692 sum -0.574 -7.675 -10.357 12.903 Atomic orbital electron populations 1.23691 0.96159 1.01508 0.99756 1.23027 0.96595 0.97360 1.01090 1.19922 0.90727 0.85409 0.96771 0.87514 1.22805 0.93255 1.00827 0.85015 1.87927 1.35078 1.93523 1.13703 1.22731 0.97061 0.99997 0.86750 1.46081 1.47343 1.35689 1.09783 1.21091 0.81507 0.84080 0.82879 1.90689 1.59343 1.57831 1.31280 1.20299 0.97056 0.96696 0.97388 1.19075 0.96942 1.06800 0.93798 1.20430 0.95967 0.97337 0.95007 1.20328 1.02285 1.07766 0.95694 1.20592 0.94960 0.96874 0.97493 1.20995 1.00025 1.07781 0.96471 1.17479 0.91080 0.90382 0.90367 1.19402 1.04480 1.02429 1.20950 0.89336 1.26144 0.94990 0.99077 0.93123 1.69708 1.15670 1.21101 1.37160 0.86350 0.83038 0.77335 0.79659 1.19797 1.22045 1.16697 0.88350 0.89133 0.87279 0.92018 0.92133 0.94036 0.94260 0.89740 0.76522 0.88222 0.90395 0.89118 0.89052 0.89055 0.88372 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 13.82 29.01 0.40 -2.05 16 2 C -0.16 -2.20 9.03 -36.03 -0.33 -2.52 16 3 C 0.18 2.48 2.92 -69.08 -0.20 2.28 16 4 H 0.11 1.69 7.58 -51.93 -0.39 1.30 16 5 C 0.06 0.64 5.67 37.16 0.21 0.85 16 6 O -0.38 -4.30 9.92 -35.23 -0.35 -4.65 16 7 C 0.03 0.25 11.01 101.05 1.11 1.36 16 8 N -0.73 -11.26 3.85 -54.94 -0.21 -11.47 16 9 C 0.52 10.14 6.29 -10.98 -0.07 10.07 16 10 O -0.52 -12.47 15.70 5.56 0.09 -12.38 16 11 C -0.07 -1.44 5.19 -29.03 -0.15 -1.60 16 12 C -0.16 -3.84 4.43 -103.91 -0.46 -4.30 16 13 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 14 C -0.24 -5.30 10.05 -39.29 -0.39 -5.70 16 15 C -0.08 -1.86 10.02 -39.66 -0.40 -2.26 16 16 C -0.23 -5.92 7.17 -38.87 -0.28 -6.20 16 17 C 0.11 2.85 5.10 -106.82 -0.54 2.31 16 18 C -0.44 -12.04 8.56 -37.74 -0.32 -12.36 16 19 H 0.09 2.52 6.99 -52.49 -0.37 2.15 16 20 C 0.08 2.24 5.41 -17.34 -0.09 2.15 16 21 N -0.81 -21.81 13.93 55.55 0.77 -21.04 16 22 Si 0.91 21.10 24.52 -169.99 -4.17 16.93 16 23 H -0.27 -6.22 6.71 56.52 0.38 -5.84 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.24 -5.76 6.85 56.52 0.39 -5.37 16 26 H 0.10 1.49 6.12 -52.49 -0.32 1.17 16 27 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.40 5.27 8.39 -40.82 -0.34 4.93 16 35 H 0.10 1.92 7.15 -51.93 -0.37 1.55 16 36 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 2.48 4.74 -52.49 -0.25 2.23 16 41 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -31.55 341.21 -6.48 -38.04 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.86 Total: 9.29 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.90 Total: -19.86 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.56 Total: -32.51 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.26 Total: -17.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.17 Total: 16.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.55 -6.48 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320595720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.262 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds