Wall clock time and date at job start Tue Mar 31 2020 07:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99974 * 2 1 4 4 H 1.09000 * 109.46758 * 120.00735 * 3 2 1 5 5 C 1.53003 * 109.47258 * 240.00390 * 3 2 1 6 6 O 1.42893 * 109.47129 * 54.99868 * 5 3 2 7 7 C 1.42900 * 114.00227 * 179.97438 * 6 5 3 8 8 N 1.46494 * 109.47242 * 0.02562 * 3 2 1 9 9 C 1.34774 * 120.00112 * 85.00214 * 8 3 2 10 10 O 1.21276 * 120.00336 * 359.97438 * 9 8 3 11 11 C 1.50704 * 119.99873 * 180.02562 * 9 8 3 12 12 C 1.50708 * 109.47082 * 179.97438 * 11 9 8 13 13 C 1.37645 * 120.12474 * 265.00047 * 12 11 9 14 14 C 1.38607 * 120.24413 * 179.97438 * 13 12 11 15 15 C 1.38659 * 120.50531 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.24554 * 0.02562 * 15 14 13 17 17 C 1.40687 * 120.12679 * 84.72379 * 12 11 9 18 18 C 1.41399 * 120.24776 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99880 * 329.70406 * 18 17 12 20 20 C 1.39940 * 119.99991 * 149.70147 * 18 17 12 21 21 N 1.30822 * 119.99857 * 162.01376 * 20 18 17 22 22 Si 1.86804 * 120.00161 * 342.01903 * 20 18 17 23 23 H 1.48502 * 109.47030 * 95.40101 * 22 20 18 24 24 H 1.48503 * 109.46745 * 215.39940 * 22 20 18 25 25 H 1.48495 * 109.46718 * 335.39879 * 22 20 18 26 26 H 1.08000 * 119.99900 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00406 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99900 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46774 * 295.00250 * 5 3 2 30 30 H 1.09000 * 109.47228 * 175.00167 * 5 3 2 31 31 H 1.09002 * 109.47472 * 300.00962 * 7 6 5 32 32 H 1.09007 * 109.46850 * 60.00136 * 7 6 5 33 33 H 1.08998 * 109.47629 * 180.02562 * 7 6 5 34 34 H 0.97003 * 119.99929 * 264.99232 * 8 3 2 35 35 H 1.08997 * 109.46981 * 299.99379 * 11 9 8 36 36 H 1.08994 * 109.47261 * 59.99706 * 11 9 8 37 37 H 1.07997 * 119.87558 * 0.02562 * 13 12 11 38 38 H 1.08006 * 119.74789 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.87321 * 179.97438 * 15 14 13 40 40 H 1.07998 * 120.12717 * 179.97438 * 16 15 14 41 41 H 0.97008 * 120.00379 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6902 1.3627 0.8899 5 6 2.9430 1.3862 -1.2493 6 8 2.1364 1.1940 -2.4130 7 6 2.8647 1.2519 -3.6411 8 7 1.1115 2.4186 0.0006 9 6 0.5968 2.8645 1.1636 10 8 0.9213 2.3436 2.2097 11 6 -0.3830 4.0096 1.1642 12 6 -0.8034 4.3104 2.5798 13 6 -1.9551 3.7565 3.0909 14 6 -2.3438 4.0310 4.3927 15 6 -1.5797 4.8653 5.1944 16 6 -0.4251 5.4308 4.7040 17 6 -0.0170 5.1537 3.3859 18 6 1.1715 5.7233 2.8737 19 1 1.7434 5.1965 2.1241 20 6 1.6068 6.9696 3.3380 21 7 2.8469 7.3411 3.1497 22 14 0.4170 8.1028 4.2268 23 1 0.5556 7.9141 5.6933 24 1 0.7230 9.5135 3.8781 25 1 -0.9732 7.7815 3.8156 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.7084 0.6113 -1.2057 30 1 3.4196 2.3654 -1.2952 31 1 3.3394 2.2285 -3.7365 32 1 3.6288 0.4745 -3.6474 33 1 2.1817 1.0972 -4.4764 34 1 0.8518 2.8351 -0.8361 35 1 0.0883 4.8911 0.7297 36 1 -1.2591 3.7384 0.5752 37 1 -2.5578 3.1049 2.4755 38 1 -3.2493 3.5924 4.7855 39 1 -1.8923 5.0726 6.2071 40 1 0.1684 6.0807 5.3299 41 1 3.1486 8.2052 3.4712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320595720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:50 Heat of formation + Delta-G solvation = -61.940961 kcal Electronic energy + Delta-G solvation = -22982.163233 eV Core-core repulsion = 19633.632789 eV Total energy + Delta-G solvation = -3348.530444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07389 -39.60501 -38.75614 -36.53647 -35.46759 -33.73577 -32.84179 -32.13553 -30.52996 -28.48670 -27.11691 -26.58923 -24.01579 -23.19975 -22.38229 -21.00928 -20.35702 -19.23046 -18.04240 -17.81060 -17.43646 -17.13577 -16.62584 -16.41696 -16.02351 -15.90836 -15.47090 -15.29122 -14.83830 -14.69621 -14.46009 -13.84711 -13.73887 -13.59429 -13.17453 -13.10699 -13.02864 -12.69696 -12.66123 -12.48549 -12.31786 -11.98595 -11.91684 -11.51999 -11.35661 -10.95645 -10.79013 -10.59164 -10.19554 -10.07123 -9.38104 -9.26800 -8.84835 -6.42623 0.81586 0.92256 1.28305 1.40889 1.47338 1.50422 1.86009 2.15284 2.32547 2.66932 2.83906 3.56645 3.85612 4.00152 4.10164 4.29390 4.35053 4.38377 4.41265 4.46827 4.55130 4.59226 4.60480 4.63409 4.69752 4.75270 4.91937 4.95476 5.00127 5.04234 5.18400 5.39597 5.48410 5.69120 5.70927 5.88799 5.97462 5.99308 6.07552 6.21329 6.31580 6.47726 6.68212 6.83124 6.93334 7.46072 8.23088 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.004821 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.113755 B = 5806.082153 C = 6894.721718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 C 0.169 3.831 4 H 0.084 0.916 5 C 0.067 3.933 6 O -0.400 6.400 7 C 0.026 3.974 8 N -0.717 5.717 9 C 0.520 3.480 10 O -0.570 6.570 11 C -0.075 4.075 12 C -0.170 4.170 13 C -0.079 4.079 14 C -0.230 4.230 15 C -0.092 4.092 16 C -0.257 4.257 17 C 0.084 3.916 18 C -0.469 4.469 19 H 0.058 0.942 20 C 0.049 3.951 21 N -0.853 5.853 22 Si 0.962 3.038 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.251 1.251 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -9.228 -11.921 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.182 4.182 3 C 0.065 3.935 4 H 0.102 0.898 5 C -0.010 4.010 6 O -0.320 6.320 7 C -0.070 4.070 8 N -0.370 5.370 9 C 0.308 3.692 10 O -0.448 6.448 11 C -0.115 4.115 12 C -0.172 4.172 13 C -0.097 4.097 14 C -0.249 4.249 15 C -0.110 4.110 16 C -0.276 4.276 17 C 0.082 3.918 18 C -0.499 4.499 19 H 0.076 0.924 20 C -0.165 4.165 21 N -0.480 5.480 22 Si 0.787 3.213 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.175 1.175 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.149 0.851 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.431 -9.466 -11.193 14.859 hybrid contribution 0.448 0.854 0.185 0.982 sum -1.982 -8.612 -11.008 14.116 Atomic orbital electron populations 1.23794 0.96413 1.01789 1.00291 1.23190 0.96692 0.97716 1.00583 1.20059 0.90585 0.85272 0.97624 0.89822 1.22675 0.92722 1.01661 0.83953 1.87888 1.35944 1.93666 1.14467 1.22916 0.97632 1.00780 0.85676 1.45901 1.46495 1.35551 1.09081 1.21052 0.81303 0.83729 0.83124 1.90661 1.61289 1.59673 1.33191 1.20345 0.98606 0.96557 0.95985 1.19539 0.96930 1.05390 0.95307 1.20883 0.95731 0.97352 0.95748 1.20864 1.02727 1.05874 0.95392 1.20972 0.94255 0.96628 0.99166 1.21148 1.01331 1.08758 0.96389 1.17719 0.91316 0.91566 0.91242 1.19321 1.05599 1.03308 1.21634 0.92405 1.26752 0.96123 0.99861 0.93753 1.69739 1.16823 1.22113 1.39279 0.85536 0.80687 0.76383 0.78733 1.19460 1.20458 1.17468 0.89659 0.87387 0.85129 0.89760 0.92247 0.93594 0.92965 0.88495 0.75105 0.88752 0.86496 0.85745 0.85460 0.86108 0.89166 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.97 13.82 67.78 0.94 -4.03 16 2 C -0.16 -4.22 9.03 25.65 0.23 -3.99 16 3 C 0.17 4.71 2.92 44.25 0.13 4.84 16 4 H 0.08 2.75 7.58 -2.39 -0.02 2.73 16 5 C 0.07 1.40 5.67 71.98 0.41 1.81 16 6 O -0.40 -8.23 9.92 -148.98 -1.48 -9.71 16 7 C 0.03 0.36 11.01 113.37 1.25 1.61 16 8 N -0.72 -21.87 3.85 -446.11 -1.72 -23.59 16 9 C 0.52 20.57 6.29 87.66 0.55 21.13 16 10 O -0.57 -28.15 15.70 -3.02 -0.05 -28.19 16 11 C -0.08 -2.89 5.19 29.11 0.15 -2.74 16 12 C -0.17 -7.83 4.43 -19.40 -0.09 -7.92 16 13 C -0.08 -3.27 9.66 22.22 0.21 -3.05 16 14 C -0.23 -9.30 10.05 22.46 0.23 -9.08 16 15 C -0.09 -4.04 10.02 22.22 0.22 -3.81 16 16 C -0.26 -12.98 7.17 22.73 0.16 -12.82 16 17 C 0.08 4.43 5.10 -21.29 -0.11 4.32 16 18 C -0.47 -26.55 8.56 23.46 0.20 -26.35 16 19 H 0.06 3.51 6.99 -2.91 -0.02 3.49 16 20 C 0.05 2.68 5.41 85.26 0.46 3.14 16 21 N -0.85 -47.64 13.93 21.82 0.30 -47.33 16 22 Si 0.96 44.21 24.52 68.60 1.68 45.89 16 23 H -0.27 -12.05 6.71 99.48 0.67 -11.38 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.25 -11.67 6.85 99.48 0.68 -10.99 16 26 H 0.09 2.48 6.12 -2.91 -0.02 2.46 16 27 H 0.11 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.41 10.56 8.39 -92.71 -0.78 9.79 16 35 H 0.09 3.72 7.15 -2.39 -0.02 3.70 16 36 H 0.12 3.46 8.05 -2.39 -0.02 3.44 16 37 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.09 4.60 4.74 -2.91 -0.01 4.58 16 41 H 0.29 14.66 8.30 -92.70 -0.77 13.89 16 Total: -1.00 -70.28 341.21 3.88 -66.40 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.19 Total: 33.48 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 4.95 Total: -36.95 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.41 Total: -70.92 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.52 Total: -37.90 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.68 Total: 45.89 kcal Total: -70.28 3.88 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320595720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.460 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds