Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99805 * 2 1 4 4 C 1.38757 * 120.05289 * 4.96340 * 3 2 1 5 5 C 1.38122 * 119.94013 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05445 * 359.97438 * 5 4 3 7 7 C 1.38235 * 120.11413 * 359.97438 * 6 5 4 8 8 C 1.38166 * 120.05542 * 0.03870 * 7 6 5 9 9 C 1.50707 * 120.02845 * 179.97438 * 8 7 6 10 10 C 1.50696 * 112.84684 * 354.34369 * 9 8 7 11 11 O 1.21295 * 119.99589 * 113.00249 * 10 9 8 12 12 N 1.34776 * 120.00508 * 292.99957 * 10 9 8 13 13 C 1.46499 * 119.99736 * 4.59580 * 12 10 9 14 14 C 1.37092 * 120.00173 * 184.59876 * 12 10 9 15 15 H 1.08003 * 120.00445 * 5.20100 * 14 12 10 16 16 C 1.38951 * 120.00296 * 185.20882 * 14 12 10 17 17 N 1.31413 * 119.99739 * 8.29774 * 16 14 12 18 18 Si 1.86795 * 120.00475 * 188.29809 * 16 14 12 19 19 H 1.48505 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47315 * 119.99758 * 18 16 14 21 21 H 1.48505 * 109.47116 * 239.99732 * 18 16 14 22 22 C 1.53779 * 113.61567 * 223.03733 * 9 8 7 23 23 C 1.53781 * 87.08115 * 220.02205 * 22 9 8 24 24 C 1.53773 * 113.60992 * 125.54022 * 9 8 7 25 25 H 1.09003 * 109.47231 * 303.15426 * 1 2 3 26 26 H 1.08998 * 109.47744 * 63.15621 * 1 2 3 27 27 H 1.09001 * 109.47038 * 183.16351 * 1 2 3 28 28 H 1.07994 * 120.03292 * 0.04638 * 4 3 2 29 29 H 1.08001 * 119.97613 * 180.25600 * 5 4 3 30 30 H 1.08002 * 119.94210 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.97157 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47119 * 354.27459 * 13 12 10 33 33 H 1.09007 * 109.47158 * 114.26943 * 13 12 10 34 34 H 1.08994 * 109.46969 * 234.27135 * 13 12 10 35 35 H 0.97001 * 120.00631 * 180.02562 * 17 16 14 36 36 H 1.09003 * 113.61128 * 334.57382 * 22 9 8 37 37 H 1.09001 * 113.61398 * 105.46913 * 22 9 8 38 38 H 1.09000 * 113.60793 * 270.88528 * 23 22 9 39 39 H 1.08994 * 113.61608 * 139.98406 * 23 22 9 40 40 H 1.09005 * 113.61719 * 254.53084 * 24 9 8 41 41 H 1.09004 * 113.62160 * 25.43445 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2953 2.3733 0.1039 5 6 1.9247 3.6027 0.1031 6 6 3.3018 3.6758 -0.0005 7 6 4.0519 2.5192 -0.1031 8 6 3.4271 1.2869 -0.1031 9 6 4.2455 0.0264 -0.2155 10 6 5.7083 0.2979 -0.4552 11 8 6.5246 0.0180 0.3972 12 7 6.1096 0.8516 -1.6166 13 6 5.1169 1.2820 -2.6043 14 6 7.4466 1.0119 -1.8736 15 1 8.1799 0.6193 -1.1848 16 6 7.8584 1.6797 -3.0204 17 7 6.9764 2.2980 -3.7732 18 14 9.6657 1.6986 -3.4922 19 1 10.4478 0.9353 -2.4867 20 1 9.8349 1.0747 -4.8292 21 1 10.1514 3.1014 -3.5355 22 6 3.6449 -1.0145 -1.1751 23 6 4.0652 -2.0837 -0.1528 24 6 3.9832 -0.9812 0.9161 25 1 -0.3634 0.5620 0.8604 26 1 -0.3634 0.4640 -0.9169 27 1 -0.3633 -1.0261 0.0567 28 1 0.2199 2.3167 0.1857 29 1 1.3413 4.5076 0.1882 30 1 3.7921 4.6381 -0.0005 31 1 5.1273 2.5789 -0.1835 32 1 4.1220 0.9843 -2.2731 33 1 5.1555 2.3664 -2.7094 34 1 5.3347 0.8159 -3.5651 35 1 7.2637 2.7639 -4.5740 36 1 2.5652 -0.9257 -1.2952 37 1 4.1730 -1.0878 -2.1258 38 1 5.0740 -2.4653 -0.3100 39 1 3.3279 -2.8755 -0.0210 40 1 4.7844 -1.0278 1.6538 41 1 2.9959 -0.8835 1.3678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322276226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = 1.513719 kcal Electronic energy + Delta-G solvation = -24519.173468 eV Core-core repulsion = 21173.394626 eV Total energy + Delta-G solvation = -3345.778842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.84764 -38.90859 -37.03528 -36.48605 -34.57009 -31.69518 -30.85358 -29.77707 -27.40657 -26.50870 -25.54381 -24.91288 -24.04841 -22.02642 -21.50011 -20.15646 -18.08728 -17.70427 -16.82123 -16.13880 -15.79997 -15.68236 -15.23441 -14.68455 -14.41286 -14.24054 -14.08530 -13.47231 -13.28505 -13.13383 -12.82196 -12.20779 -11.94964 -11.84854 -11.58830 -11.55958 -11.44164 -11.34160 -10.99578 -10.87052 -10.75700 -10.65758 -10.31068 -10.13768 -10.06181 -9.81951 -9.68942 -9.01490 -8.43169 -8.26030 -7.82642 -7.77480 -6.19014 -3.75964 1.63551 1.73926 3.16477 3.27137 3.34474 3.41207 3.89604 4.05593 4.14575 4.85573 4.93680 5.05118 5.12298 5.18334 5.19135 5.23698 5.34531 5.43698 5.51052 5.51828 5.58027 5.70548 5.84033 6.03989 6.07429 6.26663 6.32387 6.35210 6.47796 6.56471 6.58487 6.65712 6.69220 6.81883 6.99617 7.03324 7.13439 7.17503 7.49882 7.60825 7.61897 8.13211 8.54874 9.24243 9.51319 10.06156 10.74785 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.006113 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.199864 B = 4579.293536 C = 5283.407700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.125 3.875 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.151 4.151 7 C -0.066 4.066 8 C -0.079 4.079 9 C -0.046 4.046 10 C 0.464 3.536 11 O -0.591 6.591 12 N -0.442 5.442 13 C 0.112 3.888 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.027 3.973 17 N -0.885 5.885 18 Si 0.927 3.073 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.110 4.110 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -0.911 3.751 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.081 3.919 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.169 4.169 7 C -0.084 4.084 8 C -0.080 4.080 9 C -0.049 4.049 10 C 0.252 3.748 11 O -0.477 6.477 12 N -0.159 5.159 13 C -0.031 4.031 14 C -0.428 4.428 15 H 0.121 0.879 16 C -0.175 4.175 17 N -0.526 5.526 18 Si 0.754 3.246 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.172 4.172 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.725 -1.118 3.949 14.326 hybrid contribution 0.496 0.483 -0.577 0.901 sum -13.229 -0.635 3.372 13.667 Atomic orbital electron populations 1.23019 0.79734 1.03438 1.01047 1.86228 1.20218 1.26653 1.88687 1.18719 0.91367 0.84115 0.97740 1.21066 0.99489 0.92429 1.10091 1.20835 0.94608 0.96641 0.98936 1.21044 0.93777 0.98460 1.03646 1.21277 1.01163 0.90952 0.94993 1.19045 0.89897 0.95060 1.04045 1.20651 0.93457 0.91423 0.99405 1.19104 0.87927 0.84537 0.83240 1.90493 1.54223 1.58182 1.44764 1.43658 1.06653 1.51423 1.14192 1.21888 0.87900 1.01701 0.91616 1.19854 0.82287 1.33908 1.06746 0.87856 1.25284 0.99957 0.95917 0.96348 1.70170 1.33156 1.33405 1.15880 0.85835 0.82306 0.77958 0.78465 1.19284 1.20735 1.20800 1.23184 1.01586 0.94503 0.97110 1.22718 1.01140 0.96298 0.97093 1.22767 1.01700 0.94041 0.96213 0.93026 0.92931 0.88645 0.85930 0.86338 0.86106 0.84525 0.94920 0.90699 0.92560 0.92521 0.88276 0.91419 0.90413 0.92008 0.90550 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.86 101.05 1.00 1.21 16 2 O -0.30 -4.21 5.65 -19.43 -0.11 -4.32 16 3 C 0.13 1.98 6.19 -39.22 -0.24 1.73 16 4 C -0.21 -2.90 9.07 -39.43 -0.36 -3.26 16 5 C -0.09 -1.27 10.04 -39.60 -0.40 -1.67 16 6 C -0.15 -2.44 10.04 -39.56 -0.40 -2.84 16 7 C -0.07 -1.28 7.82 -39.61 -0.31 -1.58 16 8 C -0.08 -1.49 3.85 -104.47 -0.40 -1.89 16 9 C -0.05 -0.93 0.63 -156.00 -0.10 -1.03 16 10 C 0.46 11.63 4.87 -10.99 -0.05 11.58 16 11 O -0.59 -16.77 15.56 5.54 0.09 -16.68 16 12 N -0.44 -11.49 2.52 -122.19 -0.31 -11.79 16 13 C 0.11 2.66 6.36 59.85 0.38 3.04 16 14 C -0.30 -8.43 9.55 -14.94 -0.14 -8.57 16 15 H 0.10 3.06 7.20 -52.48 -0.38 2.68 16 16 C 0.03 0.71 5.39 -17.47 -0.09 0.61 16 17 N -0.88 -23.45 9.61 55.50 0.53 -22.92 16 18 Si 0.93 21.00 29.56 -169.99 -5.02 15.97 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.13 -2.28 5.60 -25.92 -0.15 -2.42 16 23 C -0.14 -2.33 7.81 -25.92 -0.20 -2.53 16 24 C -0.11 -2.02 6.77 -25.92 -0.18 -2.19 16 25 H 0.05 0.42 7.25 -51.93 -0.38 0.04 16 26 H 0.05 0.44 8.03 -51.93 -0.42 0.03 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.12 1.31 6.29 -52.49 -0.33 0.98 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.14 3.09 6.20 -52.49 -0.33 2.76 16 32 H 0.03 0.69 3.98 -51.93 -0.21 0.48 16 33 H 0.07 1.88 6.83 -51.92 -0.35 1.52 16 34 H 0.06 1.40 7.28 -51.93 -0.38 1.02 16 35 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.10 1.61 5.39 -51.93 -0.28 1.33 16 37 H 0.07 1.31 7.08 -51.93 -0.37 0.94 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.54 7.35 -51.93 -0.38 1.16 16 41 H 0.08 1.40 6.45 -51.93 -0.33 1.06 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -30.93 316.24 -7.08 -38.01 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.38 Total: 6.78 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.64 Total: -9.82 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.23 Total: -34.71 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.02 Total: -21.00 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.93 -7.08 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322276226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.522 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds