Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99805 * 2 1 4 4 C 1.38757 * 120.05289 * 4.96340 * 3 2 1 5 5 C 1.38122 * 119.94013 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05445 * 359.97438 * 5 4 3 7 7 C 1.38235 * 120.11413 * 359.97438 * 6 5 4 8 8 C 1.38166 * 120.05542 * 0.03870 * 7 6 5 9 9 C 1.50707 * 120.02845 * 179.97438 * 8 7 6 10 10 C 1.50696 * 112.84684 * 354.34369 * 9 8 7 11 11 O 1.21295 * 119.99589 * 113.00249 * 10 9 8 12 12 N 1.34776 * 120.00508 * 292.99957 * 10 9 8 13 13 C 1.46499 * 119.99736 * 4.59580 * 12 10 9 14 14 C 1.37092 * 120.00173 * 184.59876 * 12 10 9 15 15 H 1.08003 * 120.00445 * 5.20100 * 14 12 10 16 16 C 1.38951 * 120.00296 * 185.20882 * 14 12 10 17 17 N 1.31413 * 119.99739 * 8.29774 * 16 14 12 18 18 Si 1.86795 * 120.00475 * 188.29809 * 16 14 12 19 19 H 1.48505 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47315 * 119.99758 * 18 16 14 21 21 H 1.48505 * 109.47116 * 239.99732 * 18 16 14 22 22 C 1.53779 * 113.61567 * 223.03733 * 9 8 7 23 23 C 1.53781 * 87.08115 * 220.02205 * 22 9 8 24 24 C 1.53773 * 113.60992 * 125.54022 * 9 8 7 25 25 H 1.09003 * 109.47231 * 303.15426 * 1 2 3 26 26 H 1.08998 * 109.47744 * 63.15621 * 1 2 3 27 27 H 1.09001 * 109.47038 * 183.16351 * 1 2 3 28 28 H 1.07994 * 120.03292 * 0.04638 * 4 3 2 29 29 H 1.08001 * 119.97613 * 180.25600 * 5 4 3 30 30 H 1.08002 * 119.94210 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.97157 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47119 * 354.27459 * 13 12 10 33 33 H 1.09007 * 109.47158 * 114.26943 * 13 12 10 34 34 H 1.08994 * 109.46969 * 234.27135 * 13 12 10 35 35 H 0.97001 * 120.00631 * 180.02562 * 17 16 14 36 36 H 1.09003 * 113.61128 * 334.57382 * 22 9 8 37 37 H 1.09001 * 113.61398 * 105.46913 * 22 9 8 38 38 H 1.09000 * 113.60793 * 270.88528 * 23 22 9 39 39 H 1.08994 * 113.61608 * 139.98406 * 23 22 9 40 40 H 1.09005 * 113.61719 * 254.53084 * 24 9 8 41 41 H 1.09004 * 113.62160 * 25.43445 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2953 2.3733 0.1039 5 6 1.9247 3.6027 0.1031 6 6 3.3018 3.6758 -0.0005 7 6 4.0519 2.5192 -0.1031 8 6 3.4271 1.2869 -0.1031 9 6 4.2455 0.0264 -0.2155 10 6 5.7083 0.2979 -0.4552 11 8 6.5246 0.0180 0.3972 12 7 6.1096 0.8516 -1.6166 13 6 5.1169 1.2820 -2.6043 14 6 7.4466 1.0119 -1.8736 15 1 8.1799 0.6193 -1.1848 16 6 7.8584 1.6797 -3.0204 17 7 6.9764 2.2980 -3.7732 18 14 9.6657 1.6986 -3.4922 19 1 10.4478 0.9353 -2.4867 20 1 9.8349 1.0747 -4.8292 21 1 10.1514 3.1014 -3.5355 22 6 3.6449 -1.0145 -1.1751 23 6 4.0652 -2.0837 -0.1528 24 6 3.9832 -0.9812 0.9161 25 1 -0.3634 0.5620 0.8604 26 1 -0.3634 0.4640 -0.9169 27 1 -0.3633 -1.0261 0.0567 28 1 0.2199 2.3167 0.1857 29 1 1.3413 4.5076 0.1882 30 1 3.7921 4.6381 -0.0005 31 1 5.1273 2.5789 -0.1835 32 1 4.1220 0.9843 -2.2731 33 1 5.1555 2.3664 -2.7094 34 1 5.3347 0.8159 -3.5651 35 1 7.2637 2.7639 -4.5740 36 1 2.5652 -0.9257 -1.2952 37 1 4.1730 -1.0878 -2.1258 38 1 5.0740 -2.4653 -0.3100 39 1 3.3279 -2.8755 -0.0210 40 1 4.7844 -1.0278 1.6538 41 1 2.9959 -0.8835 1.3678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322276226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = -16.507886 kcal Electronic energy + Delta-G solvation = -24519.954944 eV Core-core repulsion = 21173.394626 eV Total energy + Delta-G solvation = -3346.560318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28891 -40.35211 -38.23286 -38.15355 -36.64684 -33.66542 -32.23961 -30.93579 -28.69435 -28.03156 -27.18482 -26.43685 -25.86841 -23.37998 -22.75796 -21.73487 -19.64847 -19.09016 -18.85107 -17.68036 -17.11072 -16.90178 -16.61201 -16.27610 -16.01069 -15.90843 -15.51476 -15.15511 -14.71065 -14.46974 -14.15007 -13.95661 -13.54281 -13.37275 -13.19867 -12.96573 -12.89976 -12.80273 -12.62496 -12.52776 -12.17980 -12.09388 -12.06156 -11.80344 -11.62077 -11.31923 -11.09898 -11.04476 -10.27148 -9.87234 -9.69897 -9.00384 -8.25675 -5.92546 0.39710 0.52978 1.32634 1.37559 1.52101 1.97586 2.23746 2.43765 2.81394 3.02887 3.09517 3.69825 3.77229 3.85602 3.89639 4.03181 4.08565 4.24262 4.34765 4.46186 4.56455 4.59878 4.62621 4.70812 4.76593 4.85909 4.89678 4.95472 5.05646 5.06228 5.14927 5.15743 5.24088 5.39393 5.42195 5.47033 5.54709 5.60109 5.71884 5.90333 6.04019 6.46941 6.55971 7.14955 7.47702 8.03095 8.66220 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.006113 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.199864 B = 4579.293536 C = 5283.407700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.133 3.867 4 C -0.200 4.200 5 C -0.078 4.078 6 C -0.162 4.162 7 C -0.096 4.096 8 C -0.107 4.107 9 C -0.052 4.052 10 C 0.459 3.541 11 O -0.639 6.639 12 N -0.452 5.452 13 C 0.137 3.863 14 C -0.343 4.343 15 H 0.074 0.926 16 C -0.004 4.004 17 N -0.895 5.895 18 Si 0.992 3.008 19 H -0.277 1.277 20 H -0.266 1.266 21 H -0.270 1.270 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.104 4.104 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.272 0.728 36 H 0.128 0.872 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.912 -0.633 3.313 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.087 3.913 4 C -0.218 4.218 5 C -0.096 4.096 6 C -0.180 4.180 7 C -0.114 4.114 8 C -0.108 4.108 9 C -0.055 4.055 10 C 0.248 3.752 11 O -0.527 6.527 12 N -0.169 5.169 13 C -0.006 4.006 14 C -0.471 4.471 15 H 0.092 0.908 16 C -0.205 4.205 17 N -0.535 5.535 18 Si 0.816 3.184 19 H -0.202 1.202 20 H -0.191 1.191 21 H -0.196 1.196 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.433 -0.833 3.486 17.798 hybrid contribution 1.543 0.435 -0.393 1.651 sum -15.890 -0.399 3.094 16.193 Atomic orbital electron populations 1.23408 0.76836 1.05597 1.02411 1.86162 1.23033 1.25659 1.88243 1.18624 0.90141 0.85774 0.96727 1.21523 1.01390 0.91234 1.07695 1.21261 0.93391 0.98550 0.96407 1.21188 0.95242 0.97564 1.04042 1.20987 0.99090 0.93075 0.98262 1.18907 0.91544 0.93571 1.06794 1.20560 0.90151 0.93499 1.01278 1.20038 0.90130 0.82890 0.82131 1.90435 1.56378 1.59855 1.46074 1.43813 1.06421 1.51616 1.15052 1.21620 0.88518 1.00172 0.90310 1.19780 0.83198 1.36354 1.07760 0.90802 1.26051 1.04251 0.94685 0.95470 1.70257 1.34725 1.32642 1.15841 0.84894 0.76977 0.78323 0.78224 1.20154 1.19115 1.19553 1.23191 1.02737 0.93589 0.95762 1.22656 1.00776 0.96984 0.95996 1.22784 1.01949 0.93944 0.95434 0.91373 0.91674 0.86360 0.81766 0.82348 0.85402 0.89505 0.92416 0.92470 0.94226 0.91794 0.85470 0.93393 0.93133 0.88041 0.93418 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.86 113.37 1.12 1.27 16 2 O -0.32 -7.44 5.65 -92.44 -0.52 -7.96 16 3 C 0.13 3.79 6.19 22.51 0.14 3.93 16 4 C -0.20 -4.54 9.07 22.37 0.20 -4.34 16 5 C -0.08 -1.87 10.04 22.26 0.22 -1.65 16 6 C -0.16 -5.16 10.04 22.28 0.22 -4.93 16 7 C -0.10 -3.87 7.82 22.25 0.17 -3.69 16 8 C -0.11 -4.01 3.85 -19.77 -0.08 -4.09 16 9 C -0.05 -2.14 0.63 -53.15 -0.03 -2.18 16 10 C 0.46 24.64 4.87 87.66 0.43 25.07 16 11 O -0.64 -39.38 15.56 -3.07 -0.05 -39.43 16 12 N -0.45 -25.16 2.52 -658.89 -1.66 -26.82 16 13 C 0.14 6.78 6.36 127.77 0.81 7.59 16 14 C -0.34 -20.61 9.55 84.04 0.80 -19.81 16 15 H 0.07 4.76 7.20 -2.91 -0.02 4.74 16 16 C 0.00 -0.20 5.39 84.93 0.46 0.26 16 17 N -0.89 -48.58 9.61 21.66 0.21 -48.37 16 18 Si 0.99 44.17 29.56 68.60 2.03 46.20 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 22 C -0.12 -4.09 5.60 31.12 0.17 -3.92 16 23 C -0.13 -4.30 7.81 31.12 0.24 -4.06 16 24 C -0.10 -3.83 6.77 31.12 0.21 -3.62 16 25 H 0.07 0.69 7.25 -2.39 -0.02 0.67 16 26 H 0.06 0.72 8.03 -2.39 -0.02 0.70 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.16 2.37 6.29 -2.91 -0.02 2.35 16 29 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.09 4.32 6.20 -2.91 -0.02 4.30 16 32 H 0.06 2.53 3.98 -2.38 -0.01 2.52 16 33 H 0.06 3.01 6.83 -2.38 -0.02 2.99 16 34 H 0.04 2.04 7.28 -2.39 -0.02 2.03 16 35 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 36 H 0.13 3.79 5.39 -2.39 -0.01 3.77 16 37 H 0.05 1.87 7.08 -2.39 -0.02 1.85 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.05 2.02 7.35 -2.38 -0.02 2.00 16 41 H 0.11 3.47 6.45 -2.39 -0.02 3.46 16 Total: -1.00 -73.74 316.24 6.15 -67.59 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 1.05 Total: 22.96 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 5.10 Total: -14.17 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -1.45 Total: -75.19 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.57 Total: -47.39 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -73.74 6.15 -67.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322276226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.087 kcal (2) G-P(sol) polarization free energy of solvation -73.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds