Wall clock time and date at job start Tue Mar 31 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21253 * 120.00021 * 2 1 4 4 C 1.47168 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.39856 * 120.16903 * 179.97438 * 4 2 1 6 6 C 1.37883 * 119.82280 * 180.02562 * 5 4 2 7 7 C 1.38403 * 120.17337 * 0.03227 * 6 5 4 8 8 C 1.50705 * 119.82723 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46660 * 89.99842 * 8 7 6 10 10 C 1.48528 * 111.00111 * 307.39624 * 9 8 7 11 11 C 1.55099 * 103.28381 * 200.33449 * 10 9 8 12 12 C 1.54593 * 102.84490 * 37.30637 * 11 10 9 13 13 O 1.42898 * 110.30719 * 97.12142 * 12 11 10 14 14 C 1.50702 * 110.30772 * 219.18689 * 12 11 10 15 15 H 1.08002 * 120.00299 * 117.21456 * 14 12 11 16 16 C 1.37884 * 119.99942 * 296.93014 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47903 * 110.99661 * 189.99940 * 9 8 7 23 23 C 1.38405 * 120.35022 * 0.22767 * 7 6 5 24 24 C 1.37887 * 120.16972 * 359.48861 * 23 7 6 25 25 H 1.08992 * 109.47249 * 270.01166 * 1 2 3 26 26 H 1.09001 * 109.46529 * 30.01203 * 1 2 3 27 27 H 1.09000 * 109.46765 * 150.00349 * 1 2 3 28 28 H 1.08000 * 120.09156 * 0.05507 * 5 4 2 29 29 H 1.08000 * 119.91859 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47188 * 330.00155 * 8 7 6 31 31 H 1.08996 * 109.47303 * 209.99832 * 8 7 6 32 32 H 1.09001 * 110.66718 * 318.71611 * 10 9 8 33 33 H 1.09006 * 110.66736 * 81.67838 * 10 9 8 34 34 H 1.09001 * 110.71257 * 278.99719 * 11 10 9 35 35 H 1.08998 * 110.81298 * 155.66416 * 11 10 9 36 36 H 0.96691 * 114.00808 * 62.79185 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.91924 * 26.49349 * 22 9 8 39 39 H 1.08997 * 110.08057 * 265.28894 * 22 9 8 40 40 H 1.07999 * 119.91576 * 179.72491 * 23 7 6 41 41 H 1.08001 * 120.09180 * 180.23373 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6414 -1.2787 0.0000 6 6 4.3236 -2.4770 0.0000 7 6 3.6279 -3.6735 -0.0001 8 6 4.3814 -4.9786 -0.0007 9 7 4.6266 -5.4030 1.3842 10 6 5.2726 -4.3184 2.1668 11 6 5.9166 -5.0739 3.3585 12 6 6.4086 -6.3869 2.7075 13 8 7.7950 -6.2870 2.3760 14 6 6.1765 -7.5504 3.6368 15 1 5.5100 -8.3490 3.3463 16 6 6.8196 -7.5982 4.8556 17 7 7.6312 -6.6257 5.2094 18 14 6.5378 -9.0441 6.0041 19 1 6.9534 -10.3003 5.3298 20 1 7.3386 -8.8573 7.2407 21 1 5.0972 -9.1241 6.3553 22 6 5.5636 -6.5464 1.4301 23 6 2.2439 -3.6777 -0.0050 24 6 1.5472 -2.4878 0.0009 25 1 -0.3633 0.0002 1.0276 26 1 -0.3632 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 4.1857 -0.3459 0.0001 29 1 5.4035 -2.4820 0.0000 30 1 5.3336 -4.8482 -0.5147 31 1 3.7922 -5.7381 -0.5145 32 1 6.0367 -3.8177 1.5723 33 1 4.5295 -3.6023 2.5179 34 1 5.1750 -5.2802 4.1302 35 1 6.7540 -4.5090 3.7681 36 1 8.3743 -6.1636 3.1402 37 1 8.0833 -6.6592 6.0670 38 1 6.2104 -6.5320 0.5529 39 1 5.0086 -7.4838 1.4667 40 1 1.7081 -4.6154 -0.0096 41 1 0.4672 -2.4926 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329272901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:48 Heat of formation + Delta-G solvation = -57.842795 kcal Electronic energy + Delta-G solvation = -22670.329336 eV Core-core repulsion = 19321.976602 eV Total energy + Delta-G solvation = -3348.352734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19019 -38.92868 -37.80341 -34.98064 -32.48523 -32.09330 -31.36131 -30.18658 -29.00006 -27.95215 -25.79975 -24.11831 -22.65230 -22.35208 -20.22044 -19.86049 -19.40628 -17.15144 -17.06652 -15.89289 -15.68134 -15.22284 -15.12584 -14.86649 -14.49105 -14.37107 -14.01081 -13.87147 -13.59042 -13.33662 -12.79901 -12.55845 -12.43143 -12.17011 -12.11420 -11.76203 -11.61622 -11.26558 -11.10237 -10.91691 -10.87373 -10.58516 -10.50411 -10.32214 -9.96823 -9.88066 -9.19699 -9.03257 -8.87809 -8.58706 -8.10965 -7.83649 -6.19778 -4.26117 0.55186 1.34326 2.27774 3.25657 3.30263 3.33338 3.69572 3.88757 4.32138 4.60302 4.67867 4.75692 4.85449 4.90467 5.08485 5.12753 5.14801 5.28323 5.37266 5.55972 5.62388 5.67851 5.73211 5.87309 5.94737 6.04649 6.09973 6.18367 6.23974 6.31568 6.38317 6.47752 6.57150 6.82542 6.90698 7.03607 7.25816 7.34818 7.50602 7.60808 7.65427 7.83244 8.15579 8.75084 9.40315 9.49981 10.87824 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.003305 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.926759 B = 8470.406272 C = 8535.640944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.397 3.603 3 O -0.465 6.465 4 C -0.184 4.184 5 C -0.060 4.060 6 C -0.125 4.125 7 C -0.033 4.033 8 C 0.075 3.925 9 N -0.506 5.506 10 C 0.032 3.968 11 C -0.117 4.117 12 C 0.244 3.756 13 O -0.595 6.595 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.053 3.947 23 C -0.115 4.115 24 C -0.074 4.074 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.383 0.617 37 H 0.267 0.733 38 H 0.037 0.963 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.608 8.395 -10.022 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.276 3.724 3 O -0.341 6.341 4 C -0.185 4.185 5 C -0.078 4.078 6 C -0.144 4.144 7 C -0.034 4.034 8 C -0.053 4.053 9 N -0.230 5.230 10 C -0.095 4.095 11 C -0.156 4.156 12 C 0.204 3.796 13 O -0.405 6.405 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.092 4.092 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.909 8.766 -10.271 18.005 hybrid contribution 0.837 -0.567 0.985 1.411 sum -11.072 8.199 -9.286 16.615 Atomic orbital electron populations 1.22236 0.93951 1.04764 1.04805 1.22519 0.91609 0.87693 0.70595 1.90527 1.72204 1.34449 1.36970 1.20444 0.94611 0.94614 1.08829 1.21349 0.93125 0.98479 0.94882 1.21148 1.00395 0.91701 1.01154 1.20191 0.94074 0.94949 0.94168 1.21381 0.98415 0.93142 0.92360 1.64986 1.43375 1.06275 1.08391 1.23360 0.96099 0.93866 0.96200 1.23004 0.99661 0.97401 0.95528 1.19345 0.79134 0.92210 0.88948 1.86082 1.19171 1.96165 1.39076 1.21655 1.27038 1.06681 1.01389 0.92036 1.25016 0.94506 0.96166 0.97671 1.69647 1.29479 1.31990 1.22826 0.86518 0.78343 0.82578 0.79743 1.20152 1.21233 1.20099 1.22903 0.92697 0.93402 0.98390 1.21037 0.93576 0.98233 1.00508 1.21425 0.99848 0.91440 0.96512 0.88424 0.89579 0.89482 0.85170 0.85503 0.93773 0.89917 0.94827 0.91769 0.91416 0.91670 0.76607 0.92310 0.94465 0.90129 0.85084 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 9.75 36.01 0.35 -1.03 16 2 C 0.40 4.41 7.23 -30.68 -0.22 4.18 16 3 O -0.47 -6.73 17.09 5.58 0.10 -6.63 16 4 C -0.18 -2.14 5.87 -105.06 -0.62 -2.76 16 5 C -0.06 -0.77 9.60 -39.11 -0.38 -1.14 16 6 C -0.13 -1.65 8.31 -39.65 -0.33 -1.98 16 7 C -0.03 -0.45 4.60 -104.50 -0.48 -0.93 16 8 C 0.07 1.11 5.18 -4.97 -0.03 1.09 16 9 N -0.51 -9.41 5.39 -231.78 -1.25 -10.66 16 10 C 0.03 0.62 4.97 -1.81 -0.01 0.61 16 11 C -0.12 -2.71 5.43 -24.78 -0.13 -2.84 16 12 C 0.24 5.99 0.99 -90.42 -0.09 5.90 16 13 O -0.60 -15.39 12.92 -35.23 -0.46 -15.85 16 14 C -0.53 -14.13 8.11 -34.44 -0.28 -14.41 16 15 H 0.06 1.63 7.34 -52.49 -0.39 1.25 16 16 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 17 N -0.90 -23.98 10.88 55.43 0.60 -23.38 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.05 1.13 6.17 -2.76 -0.02 1.12 16 23 C -0.12 -1.33 9.67 -39.65 -0.38 -1.72 16 24 C -0.07 -0.75 9.37 -39.11 -0.37 -1.12 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.43 6.47 -51.93 -0.34 0.09 16 28 H 0.13 1.61 7.65 -52.49 -0.40 1.21 16 29 H 0.13 1.63 7.37 -52.49 -0.39 1.24 16 30 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 31 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.03 0.63 7.07 -51.93 -0.37 0.27 16 33 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 34 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 35 H 0.06 1.57 8.02 -51.93 -0.42 1.15 16 36 H 0.38 10.07 7.17 45.56 0.33 10.40 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.04 0.78 7.39 -51.93 -0.38 0.39 16 39 H 0.08 1.71 7.39 -51.93 -0.38 1.33 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.13 0.90 6.36 -52.49 -0.33 0.57 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -29.35 333.94 -9.17 -38.51 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.10 Total: 10.65 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.07 Total: -13.32 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.65 Total: -34.04 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.36 Total: -22.48 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.35 -9.17 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329272901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.329 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds