Wall clock time and date at job start Tue Mar 31 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21253 * 120.00021 * 2 1 4 4 C 1.47168 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.39856 * 120.16903 * 179.97438 * 4 2 1 6 6 C 1.37883 * 119.82280 * 180.02562 * 5 4 2 7 7 C 1.38403 * 120.17337 * 0.03227 * 6 5 4 8 8 C 1.50705 * 119.82723 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46660 * 89.99842 * 8 7 6 10 10 C 1.48528 * 111.00111 * 307.39624 * 9 8 7 11 11 C 1.55099 * 103.28381 * 200.33449 * 10 9 8 12 12 C 1.54593 * 102.84490 * 37.30637 * 11 10 9 13 13 O 1.42898 * 110.30719 * 97.12142 * 12 11 10 14 14 C 1.50702 * 110.30772 * 219.18689 * 12 11 10 15 15 H 1.08002 * 120.00299 * 117.21456 * 14 12 11 16 16 C 1.37884 * 119.99942 * 296.93014 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47903 * 110.99661 * 189.99940 * 9 8 7 23 23 C 1.38405 * 120.35022 * 0.22767 * 7 6 5 24 24 C 1.37887 * 120.16972 * 359.48861 * 23 7 6 25 25 H 1.08992 * 109.47249 * 270.01166 * 1 2 3 26 26 H 1.09001 * 109.46529 * 30.01203 * 1 2 3 27 27 H 1.09000 * 109.46765 * 150.00349 * 1 2 3 28 28 H 1.08000 * 120.09156 * 0.05507 * 5 4 2 29 29 H 1.08000 * 119.91859 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47188 * 330.00155 * 8 7 6 31 31 H 1.08996 * 109.47303 * 209.99832 * 8 7 6 32 32 H 1.09001 * 110.66718 * 318.71611 * 10 9 8 33 33 H 1.09006 * 110.66736 * 81.67838 * 10 9 8 34 34 H 1.09001 * 110.71257 * 278.99719 * 11 10 9 35 35 H 1.08998 * 110.81298 * 155.66416 * 11 10 9 36 36 H 0.96691 * 114.00808 * 62.79185 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.91924 * 26.49349 * 22 9 8 39 39 H 1.08997 * 110.08057 * 265.28894 * 22 9 8 40 40 H 1.07999 * 119.91576 * 179.72491 * 23 7 6 41 41 H 1.08001 * 120.09180 * 180.23373 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 3.6414 -1.2787 0.0000 6 6 4.3236 -2.4770 0.0000 7 6 3.6279 -3.6735 -0.0001 8 6 4.3814 -4.9786 -0.0007 9 7 4.6266 -5.4030 1.3842 10 6 5.2726 -4.3184 2.1668 11 6 5.9166 -5.0739 3.3585 12 6 6.4086 -6.3869 2.7075 13 8 7.7950 -6.2870 2.3760 14 6 6.1765 -7.5504 3.6368 15 1 5.5100 -8.3490 3.3463 16 6 6.8196 -7.5982 4.8556 17 7 7.6312 -6.6257 5.2094 18 14 6.5378 -9.0441 6.0041 19 1 6.9534 -10.3003 5.3298 20 1 7.3386 -8.8573 7.2407 21 1 5.0972 -9.1241 6.3553 22 6 5.5636 -6.5464 1.4301 23 6 2.2439 -3.6777 -0.0050 24 6 1.5472 -2.4878 0.0009 25 1 -0.3633 0.0002 1.0276 26 1 -0.3632 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 4.1857 -0.3459 0.0001 29 1 5.4035 -2.4820 0.0000 30 1 5.3336 -4.8482 -0.5147 31 1 3.7922 -5.7381 -0.5145 32 1 6.0367 -3.8177 1.5723 33 1 4.5295 -3.6023 2.5179 34 1 5.1750 -5.2802 4.1302 35 1 6.7540 -4.5090 3.7681 36 1 8.3743 -6.1636 3.1402 37 1 8.0833 -6.6592 6.0670 38 1 6.2104 -6.5320 0.5529 39 1 5.0086 -7.4838 1.4667 40 1 1.7081 -4.6154 -0.0096 41 1 0.4672 -2.4926 0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329272901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:48 Heat of formation + Delta-G solvation = -77.554005 kcal Electronic energy + Delta-G solvation = -22671.184078 eV Core-core repulsion = 19321.976602 eV Total energy + Delta-G solvation = -3349.207476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16068 -40.25014 -39.09181 -36.66888 -34.13926 -33.65268 -32.32640 -31.29277 -30.21672 -29.64534 -27.22293 -25.79124 -23.62331 -23.45209 -21.71840 -21.26974 -20.73721 -19.10806 -18.00927 -17.06994 -16.97450 -16.78406 -16.46903 -16.00199 -15.81009 -15.75531 -15.40624 -15.00051 -14.75028 -14.50164 -14.29736 -13.95801 -13.53900 -13.28926 -13.24097 -13.04075 -12.99043 -12.96422 -12.66813 -12.49466 -12.33798 -12.22300 -12.07313 -11.93098 -11.80502 -11.08749 -10.77903 -10.60365 -10.14949 -9.93359 -9.85136 -9.32121 -8.20551 -6.34424 -0.36817 0.43341 1.39580 1.43360 1.43502 1.51494 2.40173 2.72827 3.03260 3.11407 3.26205 3.67657 3.79997 3.92802 4.00424 4.14386 4.20649 4.28081 4.34182 4.40666 4.47224 4.57256 4.62262 4.64342 4.71375 4.74335 4.80319 4.91268 5.06376 5.10761 5.13387 5.22040 5.30064 5.39260 5.44576 5.58493 5.61779 5.76877 5.90423 5.94788 6.13580 6.18836 6.52960 6.70159 7.35089 7.43050 8.85171 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.003305 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.926759 B = 8470.406272 C = 8535.640944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.396 3.604 3 O -0.509 6.509 4 C -0.192 4.192 5 C -0.076 4.076 6 C -0.135 4.135 7 C -0.049 4.049 8 C 0.077 3.923 9 N -0.506 5.506 10 C 0.049 3.951 11 C -0.110 4.110 12 C 0.226 3.774 13 O -0.602 6.602 14 C -0.554 4.554 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.061 3.939 23 C -0.116 4.116 24 C -0.059 4.059 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.377 0.623 37 H 0.268 0.732 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.150 0.850 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 8.013 -10.568 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.278 3.722 3 O -0.388 6.388 4 C -0.193 4.193 5 C -0.095 4.095 6 C -0.154 4.154 7 C -0.049 4.049 8 C -0.050 4.050 9 N -0.230 5.230 10 C -0.079 4.079 11 C -0.149 4.149 12 C 0.187 3.813 13 O -0.411 6.411 14 C -0.592 4.592 15 H 0.075 0.925 16 C -0.174 4.174 17 N -0.556 5.556 18 Si 0.786 3.214 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.066 4.066 23 C -0.135 4.135 24 C -0.076 4.076 25 H 0.133 0.867 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.227 0.773 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.168 0.832 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.578 8.380 -10.835 20.003 hybrid contribution 1.647 -0.418 1.127 2.039 sum -12.930 7.962 -9.709 18.023 Atomic orbital electron populations 1.22281 0.90105 1.06438 1.06274 1.23150 0.93621 0.86621 0.68815 1.90520 1.73455 1.35697 1.39167 1.20741 0.94261 0.95929 1.08383 1.21411 0.94198 0.98065 0.95777 1.21125 1.00261 0.92075 1.01910 1.20126 0.95026 0.93875 0.95910 1.21436 0.98948 0.94691 0.89971 1.64941 1.41869 1.05228 1.10953 1.23159 0.96220 0.93744 0.94747 1.22786 0.98567 0.97290 0.96296 1.19626 0.78797 0.92283 0.90618 1.86077 1.19988 1.96223 1.38856 1.21949 1.27473 1.07421 1.02376 0.92495 1.25722 0.94287 0.98456 0.98951 1.69740 1.29709 1.33101 1.23058 0.85578 0.78297 0.79638 0.77895 1.19899 1.20806 1.19676 1.22733 0.92636 0.94582 0.96688 1.21321 0.92815 0.99700 0.99623 1.21806 1.01770 0.89931 0.94128 0.86745 0.89031 0.86751 0.85911 0.86150 0.94099 0.87854 0.94534 0.90665 0.93554 0.93534 0.77324 0.92253 0.94373 0.90230 0.83180 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 9.75 71.24 0.69 -1.26 16 2 C 0.40 8.05 7.23 28.03 0.20 8.25 16 3 O -0.51 -14.58 17.09 -2.95 -0.05 -14.63 16 4 C -0.19 -4.09 5.87 -20.15 -0.12 -4.21 16 5 C -0.08 -1.92 9.60 22.58 0.22 -1.70 16 6 C -0.14 -3.50 8.31 22.22 0.18 -3.31 16 7 C -0.05 -1.22 4.60 -19.78 -0.09 -1.31 16 8 C 0.08 2.15 5.18 85.56 0.44 2.60 16 9 N -0.51 -18.28 5.39 -887.23 -4.78 -23.06 16 10 C 0.05 1.88 4.97 86.71 0.43 2.31 16 11 C -0.11 -5.22 5.43 31.86 0.17 -5.04 16 12 C 0.23 11.29 0.99 -10.66 -0.01 11.28 16 13 O -0.60 -31.82 12.92 -148.98 -1.93 -33.74 16 14 C -0.55 -29.88 8.11 25.60 0.21 -29.68 16 15 H 0.06 3.04 7.34 -2.91 -0.02 3.02 16 16 C 0.03 1.37 5.26 84.66 0.45 1.81 16 17 N -0.92 -49.54 10.88 21.45 0.23 -49.31 16 18 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.06 2.59 6.17 86.44 0.53 3.12 16 23 C -0.12 -2.31 9.67 22.23 0.22 -2.10 16 24 C -0.06 -0.97 9.37 22.58 0.21 -0.76 16 25 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 0.52 6.47 -2.39 -0.02 0.51 16 28 H 0.12 3.17 7.65 -2.91 -0.02 3.15 16 29 H 0.12 3.15 7.37 -2.91 -0.02 3.13 16 30 H 0.04 1.18 7.75 -2.39 -0.02 1.17 16 31 H 0.10 2.47 8.08 -2.39 -0.02 2.45 16 32 H 0.04 1.38 7.07 -2.39 -0.02 1.36 16 33 H 0.08 2.73 7.72 -2.38 -0.02 2.71 16 34 H 0.05 2.34 7.86 -2.39 -0.02 2.32 16 35 H 0.05 2.31 8.02 -2.39 -0.02 2.30 16 36 H 0.38 20.45 7.17 -74.06 -0.53 19.92 16 37 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 38 H 0.04 1.58 7.39 -2.39 -0.02 1.56 16 39 H 0.08 3.35 7.39 -2.39 -0.02 3.33 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.17 1.37 6.36 -2.91 -0.02 1.35 16 Total: -1.00 -64.35 333.94 -0.25 -64.59 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.51 Total: 31.75 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 3.74 Total: -19.99 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -4.55 Total: -72.37 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -1.98 Total: -48.37 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -64.35 -0.25 -64.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329272901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.960 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds