Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21258 * 119.99604 * 2 1 4 4 C 1.47171 * 120.00124 * 179.97438 * 2 1 3 5 5 C 1.39847 * 120.16927 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82438 * 180.02562 * 5 4 2 7 7 C 1.38404 * 120.17321 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.83065 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47037 * 89.99642 * 8 7 6 10 10 C 1.47439 * 111.00045 * 290.12992 * 9 8 7 11 11 C 1.54322 * 107.36952 * 236.65966 * 10 9 8 12 12 C 1.55398 * 102.90031 * 337.89642 * 11 10 9 13 13 O 1.42894 * 110.90261 * 277.37719 * 12 11 10 14 14 C 1.50696 * 111.02695 * 153.63025 * 12 11 10 15 15 H 1.07991 * 120.00591 * 247.60311 * 14 12 11 16 16 C 1.37885 * 119.99573 * 67.60648 * 14 12 11 17 17 N 1.31515 * 119.99698 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99798 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47005 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46788 * 120.00001 * 18 16 14 21 21 H 1.48495 * 109.46927 * 239.99901 * 18 16 14 22 22 C 1.47843 * 110.99640 * 169.28284 * 9 8 7 23 23 C 1.38415 * 120.34401 * 0.27775 * 7 6 5 24 24 C 1.37887 * 120.17205 * 359.48851 * 23 7 6 25 25 H 1.08999 * 109.47464 * 240.00068 * 1 2 3 26 26 H 1.09004 * 109.47073 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46584 * 119.99926 * 1 2 3 28 28 H 1.07998 * 120.08991 * 0.04062 * 5 4 2 29 29 H 1.07995 * 119.91890 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.46848 * 330.00044 * 8 7 6 31 31 H 1.08996 * 109.46914 * 209.99960 * 8 7 6 32 32 H 1.09002 * 109.88998 * 356.14887 * 10 9 8 33 33 H 1.09003 * 109.88733 * 117.17548 * 10 9 8 34 34 H 1.09005 * 110.70342 * 96.18020 * 11 10 9 35 35 H 1.08997 * 110.70605 * 219.41644 * 11 10 9 36 36 H 0.96697 * 114.00262 * 292.32457 * 13 12 11 37 37 H 0.97001 * 119.99346 * 179.97438 * 17 16 14 38 38 H 1.08996 * 110.37823 * 265.19398 * 22 9 8 39 39 H 1.09002 * 110.37399 * 27.53914 * 22 9 8 40 40 H 1.07999 * 119.90927 * 179.72523 * 23 7 6 41 41 H 1.08002 * 120.08464 * 180.27779 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 3.6414 -1.2786 0.0011 6 6 4.3236 -2.4769 0.0011 7 6 3.6280 -3.6734 0.0011 8 6 4.3815 -4.9785 0.0017 9 7 4.6259 -5.4022 1.3869 10 6 5.6096 -4.5216 2.0431 11 6 6.7654 -5.4138 2.5428 12 6 6.1036 -6.8165 2.6404 13 8 5.3904 -6.9592 3.8704 14 6 7.1286 -7.9100 2.4839 15 1 7.1112 -8.5457 1.6111 16 6 8.0888 -8.0990 3.4553 17 7 8.1103 -7.3246 4.5180 18 14 9.3590 -9.4550 3.2616 19 1 9.1197 -10.1790 1.9874 20 1 10.7195 -8.8599 3.2444 21 1 9.2478 -10.4033 4.3989 22 6 5.1311 -6.7908 1.4348 23 6 2.2439 -3.6776 -0.0047 24 6 1.5472 -2.4877 0.0001 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3632 -0.5138 -0.8900 28 1 4.1856 -0.3458 0.0018 29 1 5.4036 -2.4818 0.0011 30 1 5.3341 -4.8483 -0.5118 31 1 3.7926 -5.7382 -0.5122 32 1 5.9878 -3.7907 1.3284 33 1 5.1451 -4.0099 2.8860 34 1 7.5838 -5.4236 1.8229 35 1 7.1144 -5.0808 3.5202 36 1 5.9572 -6.9804 4.6536 37 1 8.7856 -7.4578 5.2015 38 1 4.3092 -7.4884 1.5954 39 1 5.6617 -7.0336 0.5141 40 1 1.7082 -4.6154 -0.0091 41 1 0.4672 -2.4926 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329272902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -59.493809 kcal Electronic energy + Delta-G solvation = -22558.137749 eV Core-core repulsion = 19209.713422 eV Total energy + Delta-G solvation = -3348.424327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14505 -38.88254 -37.80741 -34.88547 -32.47027 -32.06662 -31.32194 -30.16417 -28.96229 -28.06433 -25.88112 -24.21556 -22.60419 -22.32097 -20.00156 -19.85423 -19.53667 -17.18471 -16.99650 -15.90255 -15.44177 -15.24183 -15.12713 -14.93854 -14.69446 -14.24151 -14.18348 -13.85635 -13.55964 -12.91461 -12.73325 -12.54813 -12.48000 -12.42702 -12.14216 -11.79913 -11.37532 -11.30025 -11.25638 -11.01080 -10.90078 -10.72581 -10.44187 -10.31241 -9.92327 -9.88125 -9.28442 -9.01237 -8.83071 -8.61282 -8.08004 -7.67864 -6.25704 -4.33790 0.58222 1.36785 2.29743 3.18114 3.27112 3.30664 3.72221 3.90491 4.25859 4.63916 4.71224 4.82745 4.90353 4.92656 5.03411 5.12640 5.14184 5.29339 5.38055 5.56635 5.57505 5.69625 5.77146 5.89990 5.94041 5.98002 6.06972 6.12506 6.22555 6.34367 6.43631 6.59561 6.63286 6.82876 6.85512 7.02456 7.35943 7.38900 7.43352 7.56417 7.68375 7.79499 8.10026 8.68518 9.35587 9.58825 10.81429 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039651 B = 0.003086 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.995442 B = 9070.039152 C = 9209.444363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.465 6.465 4 C -0.185 4.185 5 C -0.060 4.060 6 C -0.127 4.127 7 C -0.027 4.027 8 C 0.078 3.922 9 N -0.520 5.520 10 C 0.044 3.956 11 C -0.148 4.148 12 C 0.253 3.747 13 O -0.581 6.581 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.070 3.930 17 N -0.896 5.896 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.058 3.942 23 C -0.115 4.115 24 C -0.073 4.073 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.382 0.618 37 H 0.267 0.733 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.130 0.870 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 9.219 -9.263 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.276 3.724 3 O -0.342 6.342 4 C -0.186 4.186 5 C -0.078 4.078 6 C -0.146 4.146 7 C -0.028 4.028 8 C -0.050 4.050 9 N -0.244 5.244 10 C -0.084 4.084 11 C -0.187 4.187 12 C 0.212 3.788 13 O -0.390 6.390 14 C -0.575 4.575 15 H 0.080 0.920 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.091 4.091 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.148 0.852 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.962 9.819 -9.245 18.027 hybrid contribution 2.058 -0.810 -0.048 2.213 sum -9.904 9.009 -9.293 16.298 Atomic orbital electron populations 1.22247 0.93927 1.04936 1.04579 1.22529 0.91617 0.87690 0.70605 1.90526 1.72275 1.34432 1.36935 1.20417 0.94608 0.94568 1.09049 1.21342 0.93143 0.98457 0.94899 1.21133 1.00287 0.91730 1.01414 1.20204 0.94015 0.94993 0.93589 1.21312 0.98274 0.93355 0.92049 1.63667 1.44807 1.03478 1.12414 1.22877 0.92635 0.95140 0.97717 1.23336 0.95931 0.98232 1.01206 1.19546 0.86768 0.90641 0.81805 1.86097 1.39153 1.96328 1.17443 1.21614 1.12628 1.16610 1.06603 0.91983 1.25016 0.97278 0.95960 0.94927 1.69596 1.35822 1.38444 1.09763 0.86400 0.80813 0.81646 0.78312 1.19680 1.20900 1.20738 1.23036 0.97808 0.87874 0.98181 1.21025 0.93639 0.98167 1.00511 1.21379 0.99785 0.91444 0.96514 0.88749 0.89898 0.88882 0.85248 0.85533 0.93836 0.90102 0.94359 0.91748 0.92668 0.90780 0.76652 0.92245 0.90896 0.93480 0.85207 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 8.93 36.01 0.32 -1.06 16 2 C 0.40 4.41 7.23 -30.68 -0.22 4.19 16 3 O -0.47 -6.74 17.08 5.58 0.10 -6.64 16 4 C -0.19 -2.17 5.87 -105.07 -0.62 -2.79 16 5 C -0.06 -0.77 9.60 -39.11 -0.38 -1.14 16 6 C -0.13 -1.67 8.71 -39.65 -0.35 -2.01 16 7 C -0.03 -0.37 5.12 -104.50 -0.53 -0.90 16 8 C 0.08 1.16 4.75 -4.97 -0.02 1.14 16 9 N -0.52 -9.71 5.15 -232.68 -1.20 -10.91 16 10 C 0.04 0.85 6.25 -2.84 -0.02 0.83 16 11 C -0.15 -3.35 5.65 -24.77 -0.14 -3.49 16 12 C 0.25 6.19 0.89 -89.49 -0.08 6.12 16 13 O -0.58 -15.27 13.18 -35.23 -0.46 -15.74 16 14 C -0.54 -14.10 8.25 -34.44 -0.28 -14.38 16 15 H 0.06 1.62 7.77 -52.49 -0.41 1.21 16 16 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 17 N -0.90 -23.72 10.78 55.43 0.60 -23.12 16 18 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.06 1.22 5.86 -2.29 -0.01 1.20 16 23 C -0.11 -1.36 9.68 -39.64 -0.38 -1.74 16 24 C -0.07 -0.75 9.47 -39.11 -0.37 -1.12 16 25 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 27 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.13 1.59 7.65 -52.49 -0.40 1.19 16 29 H 0.13 1.58 6.90 -52.49 -0.36 1.22 16 30 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 31 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16 32 H 0.04 0.65 5.48 -51.93 -0.28 0.37 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.26 8.04 -51.93 -0.42 0.84 16 35 H 0.07 1.80 7.84 -51.93 -0.41 1.39 16 36 H 0.38 10.25 6.93 45.56 0.32 10.56 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.05 0.94 7.68 -51.93 -0.40 0.54 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.13 0.91 7.05 -52.49 -0.37 0.54 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -29.33 336.79 -9.32 -38.65 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.22 Total: 10.78 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.18 Total: -13.43 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.60 Total: -34.03 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.37 Total: -22.38 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.33 -9.32 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329272902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.843 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds