Wall clock time and date at job start Tue Mar 31 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 117.00331 * 2 1 4 4 C 1.38756 * 120.05464 * 4.98505 * 3 2 1 5 5 C 1.38121 * 119.93936 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.06172 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.10826 * 359.97438 * 6 5 4 8 8 C 1.38166 * 120.05725 * 0.03817 * 7 6 5 9 9 C 1.50704 * 120.02657 * 179.97438 * 8 7 6 10 10 C 1.50699 * 112.84988 * 103.13165 * 9 8 7 11 11 O 1.21273 * 120.00077 * 116.23843 * 10 9 8 12 12 N 1.34779 * 119.99384 * 296.23593 * 10 9 8 13 13 C 1.46504 * 119.99547 * 185.01447 * 12 10 9 14 14 C 1.50691 * 109.47056 * 184.26564 * 13 12 10 15 15 H 1.07999 * 120.00177 * 4.60262 * 14 13 12 16 16 C 1.37880 * 120.00258 * 184.59643 * 14 13 12 17 17 N 1.31523 * 119.99690 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00483 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46990 * 60.00189 * 18 16 14 20 20 H 1.48499 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46998 * 300.00039 * 18 16 14 22 22 C 1.53777 * 113.61451 * 331.81927 * 9 8 7 23 23 C 1.53783 * 87.08492 * 220.02158 * 22 9 8 24 24 C 1.53783 * 87.07615 * 25.43572 * 23 22 9 25 25 H 1.09003 * 109.46944 * 54.57106 * 1 2 3 26 26 H 1.08999 * 109.47582 * 174.57098 * 1 2 3 27 27 H 1.08999 * 109.47007 * 294.57072 * 1 2 3 28 28 H 1.08000 * 120.02873 * 0.04340 * 4 3 2 29 29 H 1.08011 * 119.96465 * 180.25675 * 5 4 3 30 30 H 1.08000 * 119.94526 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.96881 * 180.02562 * 7 6 5 32 32 H 0.96988 * 120.00320 * 5.01585 * 12 10 9 33 33 H 1.09005 * 109.47073 * 304.26686 * 13 12 10 34 34 H 1.08996 * 109.47308 * 64.26228 * 13 12 10 35 35 H 0.96991 * 119.99949 * 179.97438 * 17 16 14 36 36 H 1.09007 * 113.61736 * 334.57014 * 22 9 8 37 37 H 1.09000 * 113.61434 * 105.47063 * 22 9 8 38 38 H 1.08996 * 113.61450 * 270.88727 * 23 22 9 39 39 H 1.08998 * 113.61390 * 139.98001 * 23 22 9 40 40 H 1.09006 * 113.61459 * 220.01977 * 24 23 22 41 41 H 1.08996 * 113.61774 * 89.12028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2955 2.3732 0.1044 5 6 1.9251 3.6026 0.1036 6 6 3.3021 3.6756 -0.0005 7 6 4.0521 2.5189 -0.1036 8 6 3.4272 1.2867 -0.1035 9 6 4.2454 0.0262 -0.2164 10 6 4.4037 -0.6887 1.1007 11 8 3.9368 -1.7981 1.2485 12 7 5.0644 -0.0950 2.1144 13 6 5.3141 -0.8307 3.3564 14 6 5.9705 0.0835 4.3585 15 1 6.1132 1.1280 4.1242 16 6 6.3888 -0.4135 5.5747 17 7 6.2144 -1.6855 5.8604 18 14 7.2018 0.7198 6.8172 19 1 6.2629 1.8117 7.1797 20 1 7.5553 -0.0530 8.0350 21 1 8.4329 1.3018 6.2249 22 6 5.5670 0.2160 -0.9793 23 6 5.2976 -1.1517 -1.6287 24 6 3.8043 -0.8934 -1.3674 25 1 -0.3633 0.5958 -0.8374 26 1 -0.3634 -1.0230 -0.0972 27 1 -0.3633 0.4273 0.9346 28 1 0.2201 2.3167 0.1864 29 1 1.3416 4.5075 0.1890 30 1 3.7924 4.6379 -0.0005 31 1 5.1274 2.5786 -0.1843 32 1 5.3744 0.8193 2.0217 33 1 4.3688 -1.1935 3.7602 34 1 5.9703 -1.6767 3.1520 35 1 6.5090 -2.0352 6.7157 36 1 5.5482 1.0460 -1.6857 37 1 6.4457 0.2276 -0.3344 38 1 5.7012 -1.9911 -1.0625 39 1 5.5552 -1.1909 -2.6871 40 1 3.2598 -1.7776 -1.0356 41 1 3.3035 -0.3668 -2.1797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339410579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:49 Heat of formation + Delta-G solvation = -33.003657 kcal Electronic energy + Delta-G solvation = -23535.661208 eV Core-core repulsion = 20188.385580 eV Total energy + Delta-G solvation = -3347.275628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85925 -39.19718 -37.33282 -36.65285 -34.07350 -32.27348 -31.28528 -30.09155 -27.69589 -27.19120 -25.72725 -25.31888 -22.80817 -21.93303 -21.68101 -20.58223 -18.69306 -18.07665 -16.88109 -16.13439 -15.95756 -15.65488 -15.44623 -15.07864 -14.72213 -14.48862 -14.25806 -13.71837 -13.68717 -13.48709 -12.79895 -12.54169 -12.28115 -12.06025 -11.92702 -11.81248 -11.64107 -11.40477 -11.19911 -11.04439 -10.94691 -10.83601 -10.66227 -10.29112 -10.17965 -10.00472 -9.35993 -9.18573 -8.67390 -8.64505 -8.01307 -7.76114 -6.12151 -4.18520 1.33104 1.49629 3.27833 3.32348 3.34081 3.38709 3.44754 3.77188 4.17260 4.41364 4.59529 4.77282 4.84903 4.96073 5.02442 5.06208 5.12420 5.17479 5.23452 5.27463 5.46486 5.48049 5.51067 5.68884 5.80246 5.84801 5.92418 6.02866 6.06516 6.30581 6.36180 6.40983 6.48544 6.53871 6.64982 6.82213 7.38166 7.48982 7.54340 7.58788 7.74133 8.03082 8.73185 8.85336 9.21791 9.48247 10.98091 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.005041 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.116370 B = 5553.483382 C = 6022.486078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.140 3.860 4 C -0.211 4.211 5 C -0.085 4.085 6 C -0.157 4.157 7 C -0.076 4.076 8 C -0.093 4.093 9 C -0.058 4.058 10 C 0.531 3.469 11 O -0.545 6.545 12 N -0.709 5.709 13 C 0.251 3.749 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.102 4.102 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.389 0.611 33 H 0.025 0.975 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 9.303 -15.921 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.210 6.210 3 C 0.094 3.906 4 C -0.229 4.229 5 C -0.103 4.103 6 C -0.175 4.175 7 C -0.094 4.094 8 C -0.094 4.094 9 C -0.062 4.062 10 C 0.315 3.685 11 O -0.423 6.423 12 N -0.357 5.357 13 C 0.130 3.870 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.164 4.164 23 C -0.179 4.179 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.221 0.779 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.907 8.125 -15.619 19.300 hybrid contribution 0.233 1.276 0.893 1.575 sum -7.674 9.401 -14.726 19.082 Atomic orbital electron populations 1.23043 0.79039 1.03826 1.00906 1.86269 1.20652 1.26071 1.87978 1.18881 0.91767 0.84530 0.95416 1.21193 0.99977 0.92419 1.09353 1.20890 0.94759 0.96765 0.97881 1.20989 0.93905 0.98267 1.04357 1.20894 1.00080 0.90786 0.97594 1.18857 0.90340 0.94398 1.05845 1.20812 0.96931 0.93649 0.94773 1.19543 0.78610 0.86019 0.84348 1.90623 1.48764 1.20360 1.82569 1.46355 1.55967 1.17006 1.16323 1.19081 0.96565 0.92201 0.79120 1.21195 1.40562 0.95612 1.00542 0.92030 1.24945 0.95677 0.95219 0.98130 1.69969 1.46139 1.12853 1.23442 0.86492 0.79745 0.80427 0.80354 1.20105 1.21080 1.20050 1.23028 0.95989 0.98433 0.98928 1.22839 0.97092 0.97455 1.00541 1.22695 0.96404 0.99555 0.95346 0.92997 0.88314 0.92866 0.85644 0.86082 0.85907 0.85095 0.77887 0.95739 0.95507 0.92456 0.89311 0.90624 0.89805 0.91395 0.89623 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 16 2 O -0.30 -4.66 8.98 -19.41 -0.17 -4.84 16 3 C 0.14 2.12 6.52 -39.22 -0.26 1.86 16 4 C -0.21 -2.66 9.03 -39.43 -0.36 -3.02 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.36 16 6 C -0.16 -1.81 10.04 -39.56 -0.40 -2.21 16 7 C -0.08 -0.97 9.02 -39.61 -0.36 -1.33 16 8 C -0.09 -1.42 4.83 -104.47 -0.50 -1.92 16 9 C -0.06 -0.95 0.66 -156.00 -0.10 -1.06 16 10 C 0.53 11.46 6.45 -10.98 -0.07 11.39 16 11 O -0.54 -13.85 15.91 5.56 0.09 -13.76 16 12 N -0.71 -16.00 5.54 -61.48 -0.34 -16.34 16 13 C 0.25 6.91 5.45 -5.20 -0.03 6.88 16 14 C -0.54 -15.09 9.27 -34.44 -0.32 -15.41 16 15 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 16 C 0.06 1.80 5.46 -17.81 -0.10 1.71 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 18 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.13 -1.69 6.20 -25.92 -0.16 -1.85 16 23 C -0.14 -1.95 7.81 -25.92 -0.20 -2.15 16 24 C -0.10 -1.54 5.84 -25.92 -0.15 -1.69 16 25 H 0.05 0.45 7.57 -51.93 -0.39 0.06 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.55 7.76 -51.93 -0.40 0.15 16 28 H 0.13 1.30 6.33 -52.49 -0.33 0.97 16 29 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.13 1.45 7.01 -52.48 -0.37 1.08 16 32 H 0.39 7.82 8.34 -40.82 -0.34 7.48 16 33 H 0.02 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 36 H 0.09 0.97 7.43 -51.93 -0.39 0.59 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.49 7.34 -51.93 -0.38 1.10 16 41 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -33.70 341.70 -7.91 -41.61 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.94 Total: 6.68 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.41 Total: -8.88 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.40 Total: -42.18 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.09 Total: -18.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.70 -7.91 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339410579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.608 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds