Wall clock time and date at job start Tue Mar 31 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 117.00331 * 2 1 4 4 C 1.38756 * 120.05464 * 4.98505 * 3 2 1 5 5 C 1.38121 * 119.93936 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.06172 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.10826 * 359.97438 * 6 5 4 8 8 C 1.38166 * 120.05725 * 0.03817 * 7 6 5 9 9 C 1.50704 * 120.02657 * 179.97438 * 8 7 6 10 10 C 1.50699 * 112.84988 * 103.13165 * 9 8 7 11 11 O 1.21273 * 120.00077 * 116.23843 * 10 9 8 12 12 N 1.34779 * 119.99384 * 296.23593 * 10 9 8 13 13 C 1.46504 * 119.99547 * 185.01447 * 12 10 9 14 14 C 1.50691 * 109.47056 * 184.26564 * 13 12 10 15 15 H 1.07999 * 120.00177 * 4.60262 * 14 13 12 16 16 C 1.37880 * 120.00258 * 184.59643 * 14 13 12 17 17 N 1.31523 * 119.99690 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00483 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46990 * 60.00189 * 18 16 14 20 20 H 1.48499 * 109.47266 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46998 * 300.00039 * 18 16 14 22 22 C 1.53777 * 113.61451 * 331.81927 * 9 8 7 23 23 C 1.53783 * 87.08492 * 220.02158 * 22 9 8 24 24 C 1.53783 * 87.07615 * 25.43572 * 23 22 9 25 25 H 1.09003 * 109.46944 * 54.57106 * 1 2 3 26 26 H 1.08999 * 109.47582 * 174.57098 * 1 2 3 27 27 H 1.08999 * 109.47007 * 294.57072 * 1 2 3 28 28 H 1.08000 * 120.02873 * 0.04340 * 4 3 2 29 29 H 1.08011 * 119.96465 * 180.25675 * 5 4 3 30 30 H 1.08000 * 119.94526 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.96881 * 180.02562 * 7 6 5 32 32 H 0.96988 * 120.00320 * 5.01585 * 12 10 9 33 33 H 1.09005 * 109.47073 * 304.26686 * 13 12 10 34 34 H 1.08996 * 109.47308 * 64.26228 * 13 12 10 35 35 H 0.96991 * 119.99949 * 179.97438 * 17 16 14 36 36 H 1.09007 * 113.61736 * 334.57014 * 22 9 8 37 37 H 1.09000 * 113.61434 * 105.47063 * 22 9 8 38 38 H 1.08996 * 113.61450 * 270.88727 * 23 22 9 39 39 H 1.08998 * 113.61390 * 139.98001 * 23 22 9 40 40 H 1.09006 * 113.61459 * 220.01977 * 24 23 22 41 41 H 1.08996 * 113.61774 * 89.12028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2955 2.3732 0.1044 5 6 1.9251 3.6026 0.1036 6 6 3.3021 3.6756 -0.0005 7 6 4.0521 2.5189 -0.1036 8 6 3.4272 1.2867 -0.1035 9 6 4.2454 0.0262 -0.2164 10 6 4.4037 -0.6887 1.1007 11 8 3.9368 -1.7981 1.2485 12 7 5.0644 -0.0950 2.1144 13 6 5.3141 -0.8307 3.3564 14 6 5.9705 0.0835 4.3585 15 1 6.1132 1.1280 4.1242 16 6 6.3888 -0.4135 5.5747 17 7 6.2144 -1.6855 5.8604 18 14 7.2018 0.7198 6.8172 19 1 6.2629 1.8117 7.1797 20 1 7.5553 -0.0530 8.0350 21 1 8.4329 1.3018 6.2249 22 6 5.5670 0.2160 -0.9793 23 6 5.2976 -1.1517 -1.6287 24 6 3.8043 -0.8934 -1.3674 25 1 -0.3633 0.5958 -0.8374 26 1 -0.3634 -1.0230 -0.0972 27 1 -0.3633 0.4273 0.9346 28 1 0.2201 2.3167 0.1864 29 1 1.3416 4.5075 0.1890 30 1 3.7924 4.6379 -0.0005 31 1 5.1274 2.5786 -0.1843 32 1 5.3744 0.8193 2.0217 33 1 4.3688 -1.1935 3.7602 34 1 5.9703 -1.6767 3.1520 35 1 6.5090 -2.0352 6.7157 36 1 5.5482 1.0460 -1.6857 37 1 6.4457 0.2276 -0.3344 38 1 5.7012 -1.9911 -1.0625 39 1 5.5552 -1.1909 -2.6871 40 1 3.2598 -1.7776 -1.0356 41 1 3.3035 -0.3668 -2.1797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339410579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:48 Heat of formation + Delta-G solvation = -55.422400 kcal Electronic energy + Delta-G solvation = -23536.633358 eV Core-core repulsion = 20188.385580 eV Total energy + Delta-G solvation = -3348.247778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08647 -40.46808 -38.61296 -37.89493 -36.12486 -34.35263 -32.31749 -31.02805 -29.62621 -28.20711 -27.02438 -26.55866 -24.72372 -22.89431 -22.83724 -22.14565 -20.34818 -19.13698 -18.44770 -17.72298 -17.13161 -16.98055 -16.73617 -16.58685 -16.29034 -15.89850 -15.38979 -15.29459 -14.97404 -14.59705 -14.30658 -13.98720 -13.84871 -13.59519 -13.34200 -13.06259 -12.87736 -12.80098 -12.68758 -12.44194 -12.24359 -12.12186 -11.96805 -11.87857 -11.54217 -11.31659 -11.16260 -10.80896 -10.77090 -9.84772 -9.72069 -9.03771 -8.30045 -6.47393 0.36461 0.53951 1.41379 1.46191 1.54424 1.76219 2.30870 2.46600 2.54273 2.86913 3.04281 3.45923 3.68722 3.70508 3.88554 3.95746 4.08790 4.14461 4.30193 4.35672 4.44175 4.55941 4.57789 4.68369 4.76075 4.79165 4.83202 5.00397 5.05931 5.09675 5.15517 5.18171 5.21082 5.42418 5.46130 5.48826 5.53498 5.63375 5.69800 5.83477 5.93436 6.52874 6.62712 6.90912 7.21656 7.48286 8.82113 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.005041 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.116370 B = 5553.483382 C = 6022.486078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.114 3.886 4 C -0.217 4.217 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.078 4.078 8 C -0.120 4.120 9 C -0.057 4.057 10 C 0.527 3.473 11 O -0.594 6.594 12 N -0.704 5.704 13 C 0.270 3.730 14 C -0.556 4.556 15 H 0.081 0.919 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.258 1.258 22 C -0.111 4.111 23 C -0.140 4.140 24 C -0.098 4.098 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.404 0.596 33 H -0.021 1.021 34 H -0.010 1.010 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 13.286 -16.927 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.068 3.932 4 C -0.235 4.235 5 C -0.100 4.100 6 C -0.174 4.174 7 C -0.096 4.096 8 C -0.121 4.121 9 C -0.060 4.060 10 C 0.314 3.686 11 O -0.475 6.475 12 N -0.353 5.353 13 C 0.147 3.853 14 C -0.594 4.594 15 H 0.099 0.901 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.808 3.192 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.182 1.182 22 C -0.148 4.148 23 C -0.177 4.177 24 C -0.136 4.136 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.239 0.761 33 H -0.003 1.003 34 H 0.008 0.992 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.355 12.146 -16.666 21.895 hybrid contribution -0.054 0.004 1.182 1.183 sum -7.409 12.150 -15.484 21.030 Atomic orbital electron populations 1.23257 0.77241 1.04883 1.02035 1.86220 1.22823 1.27222 1.88367 1.19236 0.92290 0.85089 0.96559 1.21478 1.00962 0.92170 1.08936 1.21335 0.95236 0.97316 0.96081 1.21389 0.94074 0.99014 1.02906 1.21170 1.01174 0.90302 0.96942 1.18916 0.90457 0.94360 1.08380 1.20648 0.99549 0.94298 0.91502 1.20586 0.76655 0.85519 0.85851 1.90588 1.50362 1.22811 1.83752 1.46105 1.56525 1.17417 1.15212 1.18516 0.93465 0.91958 0.81372 1.21543 1.40616 0.96386 1.00834 0.90057 1.26090 0.96004 0.96904 1.00486 1.70141 1.47198 1.15345 1.24282 0.85197 0.79046 0.77975 0.76954 1.18856 1.20895 1.18242 1.23082 0.93781 0.99285 0.98698 1.22814 0.95828 0.96841 1.02261 1.22686 0.97074 0.98267 0.95530 0.90530 0.87720 0.92667 0.83906 0.83005 0.82927 0.83302 0.76150 1.00287 0.99230 0.92195 0.85531 0.91176 0.92733 0.87974 0.93013 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.82 113.37 1.11 1.56 16 2 O -0.33 -10.72 8.98 -92.36 -0.83 -11.55 16 3 C 0.11 3.38 6.52 22.51 0.15 3.52 16 4 C -0.22 -5.03 9.03 22.37 0.20 -4.83 16 5 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 6 C -0.16 -2.98 10.04 22.28 0.22 -2.75 16 7 C -0.08 -1.78 9.02 22.25 0.20 -1.58 16 8 C -0.12 -3.51 4.83 -19.77 -0.10 -3.61 16 9 C -0.06 -1.86 0.66 -53.15 -0.04 -1.89 16 10 C 0.53 23.91 6.45 87.66 0.57 24.47 16 11 O -0.59 -32.61 15.91 -3.01 -0.05 -32.66 16 12 N -0.70 -33.03 5.54 -466.80 -2.59 -35.62 16 13 C 0.27 15.74 5.45 85.63 0.47 16.21 16 14 C -0.56 -31.53 9.27 25.60 0.24 -31.29 16 15 H 0.08 4.19 7.61 -2.91 -0.02 4.17 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 18 Si 0.99 43.15 29.54 68.60 2.03 45.18 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 C -0.11 -2.79 6.20 31.12 0.19 -2.60 16 23 C -0.14 -3.76 7.81 31.12 0.24 -3.52 16 24 C -0.10 -2.98 5.84 31.12 0.18 -2.80 16 25 H 0.08 1.24 7.57 -2.39 -0.02 1.22 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.14 7.76 -2.39 -0.02 1.12 16 28 H 0.14 2.65 6.33 -2.91 -0.02 2.64 16 29 H 0.15 1.93 8.06 -2.90 -0.02 1.91 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.15 2.74 7.01 -2.91 -0.02 2.72 16 32 H 0.40 16.29 8.34 -92.72 -0.77 15.52 16 33 H -0.02 -1.38 8.11 -2.38 -0.02 -1.40 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.13 2.27 7.43 -2.38 -0.02 2.25 16 37 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.92 7.34 -2.38 -0.02 1.90 16 41 H 0.10 2.60 8.09 -2.39 -0.02 2.58 16 Total: -1.00 -78.55 341.70 3.44 -75.11 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.26 Total: 26.58 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.33 Total: -9.73 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -2.30 Total: -92.93 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.88 Total: -44.21 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -78.55 3.44 -75.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339410579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.686 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds