Wall clock time and date at job start Tue Mar 31 2020 07:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99808 * 2 1 4 4 C 1.52995 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.53504 * 114.20408 * 174.99703 * 4 3 2 6 6 N 1.47066 * 87.98179 * 139.85434 * 5 4 3 7 7 C 1.34777 * 136.05680 * 152.84803 * 6 5 4 8 8 O 1.21277 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99962 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47075 * 299.99807 * 9 7 6 11 11 C 1.50696 * 109.47318 * 59.99940 * 9 7 6 12 12 H 1.07999 * 120.00072 * 235.34732 * 11 9 7 13 13 C 1.37874 * 120.00060 * 55.34265 * 11 9 7 14 14 N 1.31518 * 120.00069 * 1.97358 * 13 11 9 15 15 Si 1.86801 * 120.00245 * 181.96953 * 13 11 9 16 16 H 1.48507 * 109.46882 * 90.00074 * 15 13 11 17 17 H 1.48495 * 109.47509 * 210.00105 * 15 13 11 18 18 H 1.48501 * 109.47149 * 330.00327 * 15 13 11 19 19 C 1.50702 * 109.47179 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00136 * 47.21411 * 19 9 7 21 21 C 1.38233 * 120.00324 * 179.97438 * 20 19 9 22 22 C 1.38234 * 119.99955 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00025 * 227.19237 * 19 9 7 25 25 C 1.47064 * 87.88928 * 333.09916 * 6 5 4 26 26 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47476 * 300.00018 * 1 2 3 28 28 H 1.08997 * 109.47403 * 60.00401 * 1 2 3 29 29 H 1.09003 * 109.47416 * 59.99558 * 3 2 1 30 30 H 1.09003 * 109.47050 * 299.99973 * 3 2 1 31 31 H 1.09000 * 113.28680 * 41.93345 * 4 3 2 32 32 H 1.08995 * 113.46828 * 25.07458 * 5 4 3 33 33 H 1.08997 * 113.47047 * 254.62970 * 5 4 3 34 34 H 0.97001 * 119.99899 * 179.97438 * 14 13 11 35 35 H 1.07998 * 119.99739 * 359.97393 * 20 19 9 36 36 H 1.07999 * 120.00041 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.00365 * 179.72349 * 22 21 20 38 38 H 1.08007 * 120.00046 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00097 * 359.97438 * 24 19 9 40 40 H 1.08997 * 113.47364 * 141.67752 * 25 6 5 41 41 H 1.08997 * 113.47115 * 272.12979 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.2729 2.5253 -0.1214 6 7 5.2395 2.0243 0.8674 7 6 6.5358 2.2507 1.1583 8 8 7.1728 3.0510 0.5065 9 6 7.1939 1.5095 2.2934 10 1 6.6723 1.7330 3.2241 11 6 7.1340 0.0275 2.0274 12 1 6.6909 -0.6346 2.7566 13 6 7.6448 -0.4833 0.8530 14 7 8.2191 0.3178 -0.0177 15 14 7.5212 -2.3132 0.4986 16 1 6.2531 -2.5933 -0.2217 17 1 8.6710 -2.7334 -0.3419 18 1 7.5411 -3.0676 1.7775 19 6 8.6333 1.9411 2.4077 20 6 8.9557 3.2851 2.3864 21 6 10.2760 3.6810 2.4917 22 6 11.2738 2.7329 2.6188 23 6 10.9513 1.3889 2.6411 24 6 9.6312 0.9929 2.5341 25 6 4.1707 1.1628 1.3950 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9064 0.4080 -0.6681 32 1 3.6901 3.3753 0.2334 33 1 4.7077 2.6935 -1.1067 34 1 8.5788 -0.0417 -0.8437 35 1 8.1761 4.0259 2.2876 36 1 10.5278 4.7311 2.4747 37 1 12.3057 3.0419 2.6966 38 1 11.7310 0.6480 2.7399 39 1 9.3793 -0.0571 2.5514 40 1 4.5185 0.1748 1.6964 41 1 3.5602 1.6462 2.1577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557257478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:31 Heat of formation + Delta-G solvation = -12.138825 kcal Electronic energy + Delta-G solvation = -23431.705830 eV Core-core repulsion = 20085.334969 eV Total energy + Delta-G solvation = -3346.370861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73612 -38.40198 -37.46837 -36.30554 -33.57799 -30.80518 -30.35467 -29.64601 -27.69971 -26.59209 -25.36089 -24.91043 -23.58813 -21.24959 -20.72616 -19.90681 -18.20512 -16.81028 -16.43728 -15.97736 -15.74095 -15.50204 -15.12513 -14.86783 -14.56715 -14.02361 -13.62188 -13.58593 -13.12000 -12.61125 -12.47041 -12.22441 -12.10556 -11.96021 -11.77027 -11.50040 -11.46601 -11.21850 -10.94152 -10.80987 -10.72980 -10.37903 -10.11396 -10.01590 -9.64216 -9.60136 -9.33859 -8.67659 -8.29294 -7.67235 -7.66539 -7.37451 -6.09713 -4.24793 2.56420 2.63977 3.23654 3.32801 3.33085 3.67559 3.91372 4.16075 4.35602 4.72791 5.02028 5.09490 5.16559 5.23258 5.31157 5.39386 5.48205 5.58105 5.61327 5.80050 5.86890 5.88618 5.95941 6.01417 6.08796 6.19854 6.41706 6.47271 6.68481 6.70848 6.74493 6.88581 7.07480 7.16152 7.18094 7.25701 7.57501 7.67295 7.72711 7.82623 8.19497 8.30210 8.71039 8.92689 9.40376 9.66412 10.91076 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.005380 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.170835 B = 5202.786799 C = 6250.244223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.076 3.924 4 C -0.128 4.128 5 C 0.112 3.888 6 N -0.639 5.639 7 C 0.582 3.418 8 O -0.545 6.545 9 C 0.063 3.937 10 H 0.055 0.945 11 C -0.535 4.535 12 H 0.066 0.934 13 C 0.075 3.925 14 N -0.843 5.843 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.015 4.015 20 C -0.101 4.101 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.063 4.063 25 C 0.116 3.884 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 1.714 2.351 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.002 4.002 4 C -0.147 4.147 5 C -0.012 4.012 6 N -0.376 5.376 7 C 0.375 3.625 8 O -0.421 6.421 9 C 0.042 3.958 10 H 0.073 0.927 11 C -0.572 4.572 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.476 5.476 15 Si 0.711 3.289 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.016 4.016 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.166 4.166 24 C -0.081 4.081 25 C -0.008 4.008 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.402 2.054 1.862 9.802 hybrid contribution -0.257 -0.792 -0.663 1.064 sum -9.659 1.262 1.200 9.815 Atomic orbital electron populations 1.22713 0.81570 1.02540 0.99689 1.87947 1.19170 1.28104 1.95337 1.22459 0.93124 0.84529 1.00047 1.22976 0.91908 0.99568 1.00284 1.22656 0.89012 0.94742 0.94828 1.49249 1.08346 1.44390 1.35661 1.20786 0.77206 0.79230 0.85300 1.90549 1.61321 1.37328 1.52924 1.17809 0.89520 0.96408 0.92028 0.92681 1.20625 1.42435 0.89681 1.04479 0.91538 1.25036 0.94391 0.97693 0.96182 1.70073 1.34419 1.34337 1.08748 0.86707 0.77957 0.85611 0.78665 1.20301 1.21161 1.19556 1.19815 0.96249 0.91585 0.93938 1.20974 0.95509 0.96232 0.99231 1.20813 0.93554 0.97970 1.03925 1.20771 0.97719 0.93639 1.04134 1.20995 0.96627 0.95182 1.03803 1.21146 0.90967 1.00560 0.95451 1.22775 0.86672 0.97082 0.94311 0.89848 0.94213 0.94359 0.92987 0.93147 0.87334 0.91327 0.91199 0.92529 0.87594 0.88092 0.88190 0.88005 0.85383 0.89035 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.17 10.70 -35.23 -0.38 -5.55 16 3 C 0.08 0.91 5.86 37.15 0.22 1.13 16 4 C -0.13 -1.97 4.33 -90.24 -0.39 -2.36 16 5 C 0.11 1.87 8.20 -8.49 -0.07 1.80 16 6 N -0.64 -13.35 3.64 -185.36 -0.67 -14.03 16 7 C 0.58 14.41 5.70 -10.98 -0.06 14.34 16 8 O -0.55 -15.19 14.73 5.56 0.08 -15.11 16 9 C 0.06 1.54 2.66 -94.08 -0.25 1.29 16 10 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 11 C -0.53 -13.24 5.91 -34.44 -0.20 -13.44 16 12 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.92 3.99 -17.82 -0.07 1.85 16 14 N -0.84 -23.49 10.89 55.43 0.60 -22.88 16 15 Si 0.88 20.18 29.54 -169.99 -5.02 15.16 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.01 -0.36 4.52 -104.62 -0.47 -0.84 16 20 C -0.10 -2.36 8.21 -39.58 -0.33 -2.68 16 21 C -0.14 -3.03 10.05 -39.58 -0.40 -3.43 16 22 C -0.14 -2.92 10.05 -39.58 -0.40 -3.31 16 23 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 24 C -0.06 -1.51 8.19 -39.58 -0.32 -1.83 16 25 C 0.12 1.97 7.68 -8.63 -0.07 1.91 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.55 7.83 -51.93 -0.41 0.14 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 32 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.11 2.45 7.01 -52.49 -0.37 2.09 16 36 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 39 H 0.13 3.14 6.02 -52.49 -0.32 2.82 16 40 H 0.09 1.72 7.15 -51.93 -0.37 1.35 16 41 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -31.41 338.51 -8.45 -39.86 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.06 Total: 5.18 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.10 Total: -7.72 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.07 Total: -36.91 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.30 Total: -20.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.41 -8.45 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557257478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.721 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds