Wall clock time and date at job start Tue Mar 31 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99808 * 2 1 4 4 C 1.52995 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.53504 * 114.20408 * 174.99703 * 4 3 2 6 6 N 1.47066 * 87.98179 * 139.85434 * 5 4 3 7 7 C 1.34777 * 136.05680 * 152.84803 * 6 5 4 8 8 O 1.21277 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99962 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47075 * 299.99807 * 9 7 6 11 11 C 1.50696 * 109.47318 * 59.99940 * 9 7 6 12 12 H 1.07999 * 120.00072 * 235.34732 * 11 9 7 13 13 C 1.37874 * 120.00060 * 55.34265 * 11 9 7 14 14 N 1.31518 * 120.00069 * 1.97358 * 13 11 9 15 15 Si 1.86801 * 120.00245 * 181.96953 * 13 11 9 16 16 H 1.48507 * 109.46882 * 90.00074 * 15 13 11 17 17 H 1.48495 * 109.47509 * 210.00105 * 15 13 11 18 18 H 1.48501 * 109.47149 * 330.00327 * 15 13 11 19 19 C 1.50702 * 109.47179 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00136 * 47.21411 * 19 9 7 21 21 C 1.38233 * 120.00324 * 179.97438 * 20 19 9 22 22 C 1.38234 * 119.99955 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99865 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00025 * 227.19237 * 19 9 7 25 25 C 1.47064 * 87.88928 * 333.09916 * 6 5 4 26 26 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47476 * 300.00018 * 1 2 3 28 28 H 1.08997 * 109.47403 * 60.00401 * 1 2 3 29 29 H 1.09003 * 109.47416 * 59.99558 * 3 2 1 30 30 H 1.09003 * 109.47050 * 299.99973 * 3 2 1 31 31 H 1.09000 * 113.28680 * 41.93345 * 4 3 2 32 32 H 1.08995 * 113.46828 * 25.07458 * 5 4 3 33 33 H 1.08997 * 113.47047 * 254.62970 * 5 4 3 34 34 H 0.97001 * 119.99899 * 179.97438 * 14 13 11 35 35 H 1.07998 * 119.99739 * 359.97393 * 20 19 9 36 36 H 1.07999 * 120.00041 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.00365 * 179.72349 * 22 21 20 38 38 H 1.08007 * 120.00046 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00097 * 359.97438 * 24 19 9 40 40 H 1.08997 * 113.47364 * 141.67752 * 25 6 5 41 41 H 1.08997 * 113.47115 * 272.12979 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.2729 2.5253 -0.1214 6 7 5.2395 2.0243 0.8674 7 6 6.5358 2.2507 1.1583 8 8 7.1728 3.0510 0.5065 9 6 7.1939 1.5095 2.2934 10 1 6.6723 1.7330 3.2241 11 6 7.1340 0.0275 2.0274 12 1 6.6909 -0.6346 2.7566 13 6 7.6448 -0.4833 0.8530 14 7 8.2191 0.3178 -0.0177 15 14 7.5212 -2.3132 0.4986 16 1 6.2531 -2.5933 -0.2217 17 1 8.6710 -2.7334 -0.3419 18 1 7.5411 -3.0676 1.7775 19 6 8.6333 1.9411 2.4077 20 6 8.9557 3.2851 2.3864 21 6 10.2760 3.6810 2.4917 22 6 11.2738 2.7329 2.6188 23 6 10.9513 1.3889 2.6411 24 6 9.6312 0.9929 2.5341 25 6 4.1707 1.1628 1.3950 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9064 0.4080 -0.6681 32 1 3.6901 3.3753 0.2334 33 1 4.7077 2.6935 -1.1067 34 1 8.5788 -0.0417 -0.8437 35 1 8.1761 4.0259 2.2876 36 1 10.5278 4.7311 2.4747 37 1 12.3057 3.0419 2.6966 38 1 11.7310 0.6480 2.7399 39 1 9.3793 -0.0571 2.5514 40 1 4.5185 0.1748 1.6964 41 1 3.5602 1.6462 2.1577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557257478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:30 Heat of formation + Delta-G solvation = -31.309890 kcal Electronic energy + Delta-G solvation = -23432.537150 eV Core-core repulsion = 20085.334969 eV Total energy + Delta-G solvation = -3347.202181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27276 -40.00885 -38.68808 -37.87482 -35.49508 -32.67327 -31.73761 -31.36025 -29.26534 -27.77374 -26.75876 -26.22511 -25.28494 -22.97486 -22.26039 -21.41908 -19.85038 -18.63252 -17.45046 -17.41444 -17.19490 -16.94238 -16.72382 -16.42791 -16.17537 -15.53713 -15.37014 -14.95574 -14.59109 -14.14891 -14.03317 -13.95323 -13.60392 -13.42283 -13.31986 -13.04432 -12.81196 -12.71027 -12.54669 -12.44363 -12.22469 -11.90468 -11.78526 -11.44558 -11.42269 -11.17270 -10.65825 -10.50891 -10.17503 -9.39369 -9.30440 -9.11758 -8.08367 -6.26517 0.85822 0.91830 1.38823 1.42972 1.49813 2.22313 2.34193 2.47190 2.83017 3.19440 3.30983 3.52577 4.02786 4.15204 4.28088 4.33331 4.35387 4.46122 4.49226 4.53297 4.56654 4.59807 4.66035 4.67530 4.72209 4.81773 4.90975 4.93342 4.99035 5.04174 5.14243 5.39172 5.41368 5.44788 5.54700 5.69448 5.87902 5.93565 5.96690 6.33853 6.41566 6.51558 6.76060 7.20687 7.40632 7.83485 8.91093 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.005380 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.170835 B = 5202.786799 C = 6250.244223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.084 3.916 4 C -0.112 4.112 5 C 0.112 3.888 6 N -0.656 5.656 7 C 0.576 3.424 8 O -0.588 6.588 9 C 0.055 3.945 10 H 0.062 0.938 11 C -0.525 4.525 12 H 0.069 0.931 13 C 0.040 3.960 14 N -0.876 5.876 15 Si 0.936 3.064 16 H -0.279 1.279 17 H -0.293 1.293 18 H -0.259 1.259 19 C -0.038 4.038 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.086 4.086 25 C 0.114 3.886 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.255 0.745 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.280 1.966 3.044 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.007 3.993 4 C -0.131 4.131 5 C -0.011 4.011 6 N -0.392 5.392 7 C 0.369 3.631 8 O -0.469 6.469 9 C 0.034 3.966 10 H 0.080 0.920 11 C -0.562 4.562 12 H 0.087 0.913 13 C -0.164 4.164 14 N -0.511 5.511 15 Si 0.762 3.238 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.183 1.183 19 C -0.039 4.039 20 C -0.138 4.138 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.169 4.169 24 C -0.104 4.104 25 C -0.008 4.008 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.488 2.276 2.581 11.038 hybrid contribution -0.005 -0.856 -0.834 1.195 sum -10.492 1.420 1.747 10.731 Atomic orbital electron populations 1.22918 0.79388 1.03615 1.01084 1.87893 1.21567 1.28768 1.95652 1.22383 0.90089 0.84659 1.02196 1.22719 0.94630 0.97615 0.98150 1.22905 0.88190 0.96786 0.93239 1.49346 1.08265 1.44865 1.36694 1.20727 0.78400 0.78862 0.85109 1.90497 1.62872 1.39167 1.54316 1.17904 0.90172 0.96141 0.92404 0.92035 1.20776 1.41144 0.90220 1.04089 0.91277 1.25546 0.94169 1.00603 0.96055 1.70246 1.36280 1.35634 1.08941 0.85885 0.77271 0.82027 0.78642 1.20497 1.21897 1.18287 1.19925 0.96413 0.92412 0.95102 1.21034 0.96675 0.95677 1.00420 1.21197 0.92701 0.99919 1.02575 1.21194 0.99494 0.92818 1.02277 1.21330 0.96158 0.96689 1.02739 1.21126 0.92324 0.99677 0.97280 1.23023 0.85801 0.95793 0.96231 0.89101 0.92676 0.93026 0.90546 0.91159 0.90222 0.87511 0.93037 0.93605 0.88490 0.85116 0.84208 0.85401 0.87005 0.91246 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.29 10.70 -148.98 -1.59 -11.89 16 3 C 0.08 1.78 5.86 71.98 0.42 2.20 16 4 C -0.11 -3.33 4.33 -10.54 -0.05 -3.37 16 5 C 0.11 3.66 8.20 83.19 0.68 4.34 16 6 N -0.66 -27.60 3.64 -858.75 -3.13 -30.73 16 7 C 0.58 29.31 5.70 87.66 0.50 29.81 16 8 O -0.59 -33.98 14.73 -3.02 -0.04 -34.02 16 9 C 0.05 2.73 2.66 -13.03 -0.03 2.70 16 10 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 11 C -0.52 -26.52 5.91 25.60 0.15 -26.37 16 12 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 13 C 0.04 2.11 3.99 84.65 0.34 2.45 16 14 N -0.88 -50.44 10.89 21.45 0.23 -50.21 16 15 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 C -0.04 -1.88 4.52 -19.87 -0.09 -1.97 16 20 C -0.12 -5.66 8.21 22.27 0.18 -5.48 16 21 C -0.15 -5.94 10.05 22.27 0.22 -5.71 16 22 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 23 C -0.15 -6.27 10.05 22.27 0.22 -6.04 16 24 C -0.09 -4.15 8.19 22.27 0.18 -3.97 16 25 C 0.11 3.81 7.68 83.10 0.64 4.44 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 1.28 7.83 -2.39 -0.02 1.27 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.11 2.71 8.10 -2.39 -0.02 2.69 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.10 4.64 7.01 -2.91 -0.02 4.62 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.11 5.63 6.02 -2.91 -0.02 5.61 16 40 H 0.07 2.62 7.15 -2.39 -0.02 2.60 16 41 H 0.10 2.68 7.89 -2.39 -0.02 2.66 16 Total: -1.00 -70.42 338.51 3.35 -67.07 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 1.01 Total: 25.99 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 4.85 Total: -10.43 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.89 Total: -80.94 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.64 Total: -45.91 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -70.42 3.35 -67.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557257478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.757 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds