Wall clock time and date at job start Tue Mar 31 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32689 * 1 3 3 C 1.47669 * 119.99618 * 2 1 4 4 C 1.39707 * 119.99783 * 359.72019 * 3 2 1 5 5 C 1.37606 * 120.00124 * 179.76557 * 4 3 2 6 6 C 1.39738 * 119.99532 * 0.51455 * 5 4 3 7 7 C 1.47689 * 120.00239 * 179.72157 * 6 5 4 8 8 O 1.21582 * 119.99875 * 150.50122 * 7 6 5 9 9 N 1.34779 * 120.00004 * 330.50197 * 7 6 5 10 10 C 1.46499 * 119.99664 * 186.27942 * 9 7 6 11 11 C 1.50702 * 109.47121 * 90.00106 * 10 9 7 12 12 H 1.07990 * 120.00181 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99513 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00383 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99721 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46809 * 59.99861 * 15 13 11 17 17 H 1.48497 * 109.46997 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47128 * 300.00295 * 15 13 11 19 19 C 1.46500 * 119.99792 * 6.27198 * 9 7 6 20 20 C 1.53001 * 109.46493 * 98.16328 * 19 9 7 21 21 O 1.42902 * 109.47468 * 65.00161 * 20 19 9 22 22 C 1.42896 * 114.00236 * 179.97438 * 21 20 19 23 23 C 1.39740 * 119.99409 * 359.74247 * 6 5 4 24 24 C 1.37599 * 119.99863 * 359.97438 * 23 6 5 25 25 H 1.07999 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99896 * 179.72361 * 1 2 3 27 27 H 1.07999 * 120.00041 * 180.02562 * 2 1 3 28 28 H 1.08002 * 119.99890 * 0.02564 * 4 3 2 29 29 H 1.08000 * 119.99729 * 180.25725 * 5 4 3 30 30 H 1.09007 * 109.46707 * 209.99435 * 10 9 7 31 31 H 1.09002 * 109.47145 * 329.99541 * 10 9 7 32 32 H 0.97005 * 119.99874 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.47171 * 218.15949 * 19 9 7 34 34 H 1.08991 * 109.47110 * 338.16581 * 19 9 7 35 35 H 1.09006 * 109.47141 * 184.99538 * 20 19 9 36 36 H 1.09002 * 109.47473 * 304.99537 * 20 19 9 37 37 H 1.08994 * 109.47275 * 299.99989 * 22 21 20 38 38 H 1.09005 * 109.46942 * 60.00157 * 22 21 20 39 39 H 1.09002 * 109.47143 * 179.97438 * 22 21 20 40 40 H 1.08008 * 120.00362 * 179.97438 * 23 6 5 41 41 H 1.07998 * 120.00440 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2789 0.0000 4 6 1.3665 2.4887 -0.0059 5 6 2.0544 3.6805 -0.0010 6 6 3.4517 3.6806 -0.0010 7 6 4.1901 4.9597 -0.0020 8 8 5.2877 5.0283 0.5164 9 7 3.6473 6.0508 -0.5776 10 6 4.4328 7.2812 -0.7011 11 6 5.1785 7.2717 -2.0107 12 1 5.0778 6.4329 -2.6834 13 6 5.9894 8.3340 -2.3499 14 7 6.1125 9.3552 -1.5304 15 14 6.9144 8.3219 -3.9728 16 1 5.9448 8.2381 -5.0945 17 1 7.7105 9.5692 -4.0980 18 1 7.8235 7.1485 -4.0157 19 6 2.2717 6.0062 -1.0797 20 6 1.3298 6.6193 -0.0415 21 8 1.6308 8.0076 0.1139 22 6 0.8033 8.6787 1.0661 23 6 4.1504 2.4704 -0.0006 24 6 3.4623 1.2788 0.0005 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8669 -0.9353 -0.0004 28 1 0.2865 2.4886 -0.0101 29 1 1.5142 4.6157 -0.0014 30 1 3.7658 8.1428 -0.6691 31 1 5.1447 7.3419 0.1220 32 1 6.6827 10.1027 -1.7693 33 1 2.2057 6.5720 -2.0091 34 1 1.9854 4.9708 -1.2635 35 1 0.2983 6.5064 -0.3752 36 1 1.4606 6.1100 0.9134 37 1 -0.2390 8.6085 0.7550 38 1 0.9228 8.2123 2.0440 39 1 1.0951 9.7273 1.1259 40 1 5.2305 2.4703 -0.0010 41 1 4.0022 0.3434 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641320880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:45 Heat of formation + Delta-G solvation = -24.431856 kcal Electronic energy + Delta-G solvation = -22989.273120 eV Core-core repulsion = 19642.369193 eV Total energy + Delta-G solvation = -3346.903927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58372 -39.48076 -38.84015 -36.71715 -35.33336 -34.64164 -32.46707 -31.01152 -30.67151 -28.91682 -27.19799 -25.75956 -24.29859 -23.83552 -23.53286 -20.89116 -20.50036 -18.67788 -18.38628 -18.11313 -17.14076 -16.91113 -16.75772 -16.26865 -16.09591 -15.88791 -15.55106 -15.23929 -14.81168 -14.49479 -14.31264 -14.11439 -13.77045 -13.68140 -13.23850 -13.11902 -13.05432 -12.78987 -12.59504 -12.51018 -12.23643 -12.18080 -12.01343 -11.73650 -11.61225 -11.24773 -10.70743 -10.64387 -10.53480 -9.94245 -9.50727 -9.12883 -8.20304 -6.35714 -0.34963 0.38230 1.34371 1.38456 1.40078 1.47461 2.02539 2.28966 2.42456 2.86080 2.95388 3.09035 3.52617 3.79428 3.85632 3.95551 4.07752 4.19382 4.31186 4.36612 4.38203 4.42558 4.47576 4.52259 4.58928 4.74850 4.86673 4.90673 4.97717 5.04203 5.13946 5.26940 5.28458 5.37323 5.43729 5.54773 5.70217 5.83790 5.86519 5.95796 6.08475 6.32477 6.70072 6.74845 7.24324 7.39959 8.86891 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.004846 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.054296 B = 5777.062052 C = 6968.180760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C -0.038 4.038 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.147 4.147 7 C 0.533 3.467 8 O -0.600 6.600 9 N -0.585 5.585 10 C 0.267 3.733 11 C -0.549 4.549 12 H 0.051 0.949 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.969 3.031 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.278 1.278 19 C 0.072 3.928 20 C 0.040 3.960 21 O -0.413 6.413 22 C 0.026 3.974 23 C -0.082 4.082 24 C -0.115 4.115 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.041 0.959 31 H -0.013 1.013 32 H 0.267 0.733 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.856 -16.257 2.415 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C -0.039 4.039 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.150 4.150 7 C 0.323 3.677 8 O -0.483 6.483 9 N -0.313 5.313 10 C 0.146 3.854 11 C -0.587 4.587 12 H 0.069 0.931 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.793 3.207 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.203 1.203 19 C -0.050 4.050 20 C -0.037 4.037 21 O -0.332 6.332 22 C -0.069 4.069 23 C -0.101 4.101 24 C -0.133 4.133 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.185 0.815 29 H 0.183 0.817 30 H 0.059 0.941 31 H 0.006 0.994 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.077 -15.893 2.587 24.208 hybrid contribution 1.207 0.637 -0.343 1.407 sum -16.870 -15.256 2.244 22.855 Atomic orbital electron populations 1.24763 0.95133 1.03867 0.95318 1.21898 0.95896 0.94973 1.03259 1.19652 0.93043 0.94658 0.96513 1.21611 1.01595 0.90343 0.99985 1.22290 0.91968 1.01262 0.97820 1.20017 0.95296 0.92228 1.07485 1.19083 0.85416 0.84935 0.78281 1.90688 1.23630 1.85807 1.48204 1.48030 1.14570 1.12374 1.56341 1.18784 0.90102 0.81832 0.94675 1.21713 1.28321 1.04350 1.04356 0.93103 1.25877 0.97203 0.94755 1.01272 1.70074 1.39597 1.08691 1.38261 0.85456 0.78605 0.77466 0.79185 1.18391 1.20067 1.20308 1.22755 0.80251 1.04261 0.97701 1.23216 0.99504 0.82357 0.98650 1.88082 1.60284 1.22443 1.62430 1.22886 0.94942 0.97643 0.91475 1.21180 1.00142 0.91726 0.97043 1.21427 0.94052 0.97527 1.00308 0.86970 0.85647 0.84950 0.81528 0.81728 0.94060 0.99440 0.92431 0.90535 0.84014 0.87724 0.92783 0.91403 0.93850 0.90166 0.86879 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 14.15 66.65 0.94 -0.46 16 2 C -0.14 -1.87 9.90 23.59 0.23 -1.64 16 3 C -0.04 -0.75 5.87 -20.07 -0.12 -0.86 16 4 C -0.12 -2.22 9.38 22.48 0.21 -2.01 16 5 C -0.12 -2.94 7.46 22.48 0.17 -2.78 16 6 C -0.15 -5.22 5.59 -20.05 -0.11 -5.33 16 7 C 0.53 25.47 7.46 86.74 0.65 26.12 16 8 O -0.60 -34.89 16.24 -3.97 -0.06 -34.96 16 9 N -0.58 -27.57 2.46 -829.73 -2.04 -29.61 16 10 C 0.27 15.71 5.04 85.63 0.43 16.14 16 11 C -0.55 -33.82 9.39 25.60 0.24 -33.58 16 12 H 0.05 3.09 7.81 -2.92 -0.02 3.06 16 13 C 0.01 0.48 5.46 84.66 0.46 0.94 16 14 N -0.93 -58.91 13.29 21.45 0.28 -58.63 16 15 Si 0.97 46.91 29.54 68.60 2.03 48.94 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 C 0.07 2.45 5.34 86.38 0.46 2.91 16 20 C 0.04 1.10 5.04 71.98 0.36 1.46 16 21 O -0.41 -14.73 8.82 -148.98 -1.31 -16.04 16 22 C 0.03 0.68 11.01 113.37 1.25 1.93 16 23 C -0.08 -2.63 9.57 22.48 0.22 -2.42 16 24 C -0.12 -2.68 9.76 22.48 0.22 -2.46 16 25 H 0.11 0.80 6.02 -2.91 -0.02 0.78 16 26 H 0.13 0.66 8.06 -2.91 -0.02 0.63 16 27 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.17 1.82 6.15 -2.91 -0.02 1.80 16 29 H 0.17 3.69 2.57 -2.91 -0.01 3.68 16 30 H 0.04 2.50 6.40 -2.38 -0.02 2.48 16 31 H -0.01 -0.86 7.34 -2.39 -0.02 -0.87 16 32 H 0.27 15.84 8.31 -92.70 -0.77 15.06 16 33 H 0.08 2.78 8.13 -2.39 -0.02 2.76 16 34 H 0.14 3.83 4.04 -2.55 -0.01 3.82 16 35 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.05 1.44 7.24 -2.39 -0.02 1.43 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 3.98 7.91 -2.91 -0.02 3.96 16 41 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -84.95 340.76 5.54 -79.42 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.03 Total: 12.92 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.61 Total: -2.04 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.76 Total: -88.24 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -1.38 Total: -51.00 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -84.95 5.54 -79.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641320880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.983 kcal (2) G-P(sol) polarization free energy of solvation -84.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds