Wall clock time and date at job start Tue Mar 31 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00161 * 2 1 4 4 O 1.21278 * 119.99729 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99913 * 359.97438 * 3 2 1 6 6 H 1.08997 * 109.47474 * 60.00462 * 5 3 2 7 7 C 1.50700 * 109.47281 * 300.00121 * 5 3 2 8 8 H 1.07997 * 120.00522 * 335.39817 * 7 5 3 9 9 C 1.37879 * 119.99789 * 155.12216 * 7 5 3 10 10 N 1.31512 * 119.99932 * 173.82380 * 9 7 5 11 11 Si 1.86807 * 120.00016 * 353.81839 * 9 7 5 12 12 H 1.48499 * 109.46716 * 84.99251 * 11 9 7 13 13 H 1.48494 * 109.46887 * 204.99189 * 11 9 7 14 14 H 1.48495 * 109.47111 * 324.99286 * 11 9 7 15 15 C 1.50706 * 109.47082 * 180.02562 * 5 3 2 16 16 C 1.38239 * 119.99958 * 66.20041 * 15 5 3 17 17 C 1.38225 * 119.99882 * 179.78738 * 16 15 5 18 18 C 1.38239 * 120.00315 * 0.44348 * 17 16 15 19 19 C 1.38237 * 119.99750 * 359.81237 * 18 17 16 20 20 C 1.38233 * 119.99947 * 359.97438 * 19 18 17 21 21 C 1.46502 * 119.99515 * 179.97438 * 2 1 3 22 22 C 1.53777 * 113.61833 * 39.14089 * 21 2 1 23 23 C 1.53948 * 87.02296 * 220.04672 * 22 21 2 24 24 O 1.42904 * 113.53599 * 270.81381 * 23 22 21 25 25 C 1.53775 * 113.61808 * 301.52972 * 21 2 1 26 26 H 1.09002 * 109.46659 * 90.00498 * 1 2 3 27 27 H 1.09001 * 109.47158 * 210.00117 * 1 2 3 28 28 H 1.08996 * 109.46963 * 330.00684 * 1 2 3 29 29 H 0.97001 * 120.00121 * 180.02562 * 10 9 7 30 30 H 1.08003 * 119.99580 * 359.97438 * 16 15 5 31 31 H 1.08003 * 120.00232 * 180.27140 * 17 16 15 32 32 H 1.07994 * 120.00268 * 179.83392 * 18 17 16 33 33 H 1.07997 * 120.00456 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00174 * 180.02562 * 20 19 18 35 35 H 1.09011 * 112.84476 * 170.33296 * 21 2 1 36 36 H 1.09002 * 113.61183 * 334.56449 * 22 21 2 37 37 H 1.08998 * 113.61549 * 105.46332 * 22 21 2 38 38 H 1.09000 * 113.66995 * 139.93111 * 23 22 21 39 39 H 0.96705 * 113.99747 * 277.49005 * 24 23 22 40 40 H 1.09000 * 113.61680 * 254.53372 * 25 21 2 41 41 H 1.09002 * 113.61662 * 25.43421 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 1 0.7585 2.5303 0.8891 7 6 0.5195 2.5518 -1.2314 8 1 0.7795 1.9837 -2.1123 9 6 -0.6078 3.3456 -1.2309 10 7 -1.2958 3.5114 -2.3394 11 14 -1.1582 4.1855 0.3444 12 1 -0.4277 5.4688 0.5022 13 1 -2.6177 4.4514 0.2796 14 1 -0.8665 3.3040 1.5032 15 6 2.3648 3.6177 -0.0011 16 6 3.1812 3.8286 -1.0966 17 6 4.0763 4.8819 -1.0988 18 6 4.1617 5.7188 -0.0019 19 6 3.3491 5.5047 1.0957 20 6 2.4508 4.4541 1.0962 21 6 2.1974 -1.2688 0.0006 22 6 1.5590 -2.3491 -0.8883 23 6 1.9072 -3.3557 0.2232 24 8 3.2050 -3.9368 0.0808 25 6 1.8673 -2.1702 1.2019 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 -2.0887 4.0702 -2.3392 30 1 3.1174 3.1722 -1.9519 31 1 4.7111 5.0493 -1.9564 32 1 4.8630 6.5401 -0.0026 33 1 3.4160 6.1583 1.9529 34 1 1.8156 4.2871 1.9535 35 1 3.2667 -1.1403 -0.1682 36 1 0.4874 -2.2155 -1.0363 37 1 2.0976 -2.5223 -1.8200 38 1 1.1280 -4.0965 0.4026 39 1 3.2365 -4.6830 -0.5336 40 1 2.6544 -2.1992 1.9554 41 1 0.8802 -1.9877 1.6266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648705965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:26 Heat of formation + Delta-G solvation = -30.853396 kcal Electronic energy + Delta-G solvation = -23574.057555 eV Core-core repulsion = 20226.875170 eV Total energy + Delta-G solvation = -3347.182386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06328 -38.83852 -37.62529 -35.30299 -33.89785 -32.76842 -31.42939 -30.08972 -27.84549 -26.44006 -25.67672 -24.48704 -23.10701 -21.80190 -20.96450 -19.39814 -18.57094 -17.20061 -17.08581 -16.39799 -16.06966 -15.73851 -14.83640 -14.66276 -14.48072 -14.26076 -13.83662 -13.33940 -13.02075 -12.69795 -12.65143 -12.49567 -12.35864 -12.29481 -12.00204 -11.87928 -11.59882 -11.45101 -11.13944 -10.98328 -10.92497 -10.42496 -10.26770 -10.22078 -9.92829 -9.81209 -9.51953 -8.87514 -8.68855 -8.08911 -7.95281 -7.77242 -6.29570 -4.31550 2.19492 2.26171 3.15188 3.22181 3.27753 3.52563 3.73650 4.00704 4.23063 4.58053 4.65694 4.75094 5.00882 5.05692 5.10889 5.51225 5.58795 5.64145 5.64700 5.73937 5.78766 5.85332 5.90454 5.96477 6.05418 6.09159 6.20703 6.32069 6.38073 6.46717 6.51176 6.62164 6.77260 6.89648 7.18200 7.22816 7.30317 7.31861 7.55416 7.64047 7.84041 8.10225 8.24863 8.69639 9.07631 9.28640 10.81477 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.006010 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.234114 B = 4658.037993 C = 5736.513314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.605 5.605 3 C 0.537 3.463 4 O -0.559 6.559 5 C 0.022 3.978 6 H 0.067 0.933 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.088 3.912 10 N -0.883 5.883 11 Si 0.859 3.141 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.263 1.263 15 C -0.029 4.029 16 C -0.069 4.069 17 C -0.130 4.130 18 C -0.143 4.143 19 C -0.129 4.129 20 C -0.136 4.136 21 C 0.133 3.867 22 C -0.181 4.181 23 C 0.080 3.920 24 O -0.551 6.551 25 C -0.148 4.148 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.268 0.732 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.378 0.622 40 H 0.077 0.923 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -8.450 5.297 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.337 5.337 3 C 0.328 3.672 4 O -0.437 6.437 5 C 0.001 3.999 6 H 0.085 0.915 7 C -0.544 4.544 8 H 0.100 0.900 9 C -0.116 4.116 10 N -0.518 5.518 11 Si 0.686 3.314 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.189 1.189 15 C -0.030 4.030 16 C -0.088 4.088 17 C -0.148 4.148 18 C -0.161 4.161 19 C -0.148 4.148 20 C -0.155 4.155 21 C 0.029 3.971 22 C -0.219 4.219 23 C 0.020 3.980 24 O -0.356 6.356 25 C -0.186 4.186 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.226 0.774 40 H 0.095 0.905 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.204 -7.864 5.623 10.184 hybrid contribution -0.780 0.180 0.266 0.844 sum 2.424 -7.683 5.889 9.979 Atomic orbital electron populations 1.21692 0.79069 1.01230 1.02743 1.47674 1.07090 1.04862 1.74052 1.21100 0.87400 0.85651 0.73040 1.90587 1.14579 1.87786 1.50788 1.18543 0.93578 0.87048 1.00735 0.91535 1.20459 1.07120 1.29297 0.97482 0.90046 1.24886 0.96011 0.94906 0.95846 1.69863 1.17855 1.37893 1.26213 0.87084 0.78265 0.81558 0.84518 1.18958 1.21108 1.18861 1.20091 0.94139 0.96267 0.92522 1.20841 0.93853 0.96165 0.97892 1.21032 0.99551 0.96191 0.98012 1.20857 1.00526 1.00105 0.94595 1.20866 0.97411 0.98271 0.98206 1.20957 0.99671 0.96860 0.97966 1.22349 0.98229 0.81930 0.94637 1.24133 1.02368 0.96803 0.98635 1.22590 0.84808 0.93469 0.97083 1.86496 1.29564 1.51647 1.67902 1.23563 1.02990 0.94133 0.97938 0.91597 0.93393 0.90389 0.92178 0.86469 0.87133 0.87347 0.87315 0.87554 0.86469 0.88643 0.90680 0.91257 0.77446 0.90477 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.61 7.75 59.85 0.46 2.07 16 2 N -0.60 -11.33 3.08 -173.00 -0.53 -11.86 16 3 C 0.54 11.97 6.96 -10.99 -0.08 11.89 16 4 O -0.56 -13.68 14.90 5.56 0.08 -13.60 16 5 C 0.02 0.51 1.10 -94.07 -0.10 0.41 16 6 H 0.07 1.50 4.47 -51.93 -0.23 1.27 16 7 C -0.51 -12.76 6.05 -34.44 -0.21 -12.97 16 8 H 0.08 2.28 8.05 -52.49 -0.42 1.85 16 9 C 0.09 2.29 5.47 -17.82 -0.10 2.20 16 10 N -0.88 -24.58 13.96 55.43 0.77 -23.81 16 11 Si 0.86 19.73 26.60 -169.99 -4.52 15.21 16 12 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.26 -5.62 6.30 56.52 0.36 -5.26 16 15 C -0.03 -0.67 3.88 -104.62 -0.41 -1.07 16 16 C -0.07 -1.56 8.31 -39.59 -0.33 -1.89 16 17 C -0.13 -2.54 10.05 -39.59 -0.40 -2.94 16 18 C -0.14 -2.59 10.05 -39.58 -0.40 -2.99 16 19 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 20 C -0.14 -2.86 9.15 -39.58 -0.36 -3.22 16 21 C 0.13 2.16 4.14 -67.12 -0.28 1.88 16 22 C -0.18 -2.33 7.37 -25.83 -0.19 -2.52 16 23 C 0.08 0.90 5.28 -25.83 -0.14 0.77 16 24 O -0.55 -6.36 13.59 -35.23 -0.48 -6.84 16 25 C -0.15 -1.95 7.44 -25.92 -0.19 -2.14 16 26 H 0.07 1.18 7.88 -51.93 -0.41 0.78 16 27 H 0.05 0.63 6.33 -51.93 -0.33 0.30 16 28 H 0.08 1.42 6.14 -51.93 -0.32 1.10 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.12 2.74 7.89 -52.48 -0.41 2.33 16 31 H 0.11 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.11 2.07 7.96 -52.49 -0.42 1.65 16 35 H 0.12 2.20 7.21 -51.92 -0.37 1.82 16 36 H 0.10 1.17 6.81 -51.93 -0.35 0.82 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.38 2.53 9.12 45.56 0.42 2.95 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.15 6.82 -51.93 -0.35 0.79 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -31.07 331.26 -7.72 -38.80 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.93 Total: 10.46 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -3.11 Total: -13.36 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.24 Total: -35.67 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.40 Total: -20.44 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.52 Total: 15.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.07 -7.72 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648705965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.943 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds