Wall clock time and date at job start Tue Mar 31 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 120.00161 * 2 1 4 4 O 1.21278 * 119.99729 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99913 * 359.97438 * 3 2 1 6 6 H 1.08997 * 109.47474 * 60.00462 * 5 3 2 7 7 C 1.50700 * 109.47281 * 300.00121 * 5 3 2 8 8 H 1.07997 * 120.00522 * 335.39817 * 7 5 3 9 9 C 1.37879 * 119.99789 * 155.12216 * 7 5 3 10 10 N 1.31512 * 119.99932 * 173.82380 * 9 7 5 11 11 Si 1.86807 * 120.00016 * 353.81839 * 9 7 5 12 12 H 1.48499 * 109.46716 * 84.99251 * 11 9 7 13 13 H 1.48494 * 109.46887 * 204.99189 * 11 9 7 14 14 H 1.48495 * 109.47111 * 324.99286 * 11 9 7 15 15 C 1.50706 * 109.47082 * 180.02562 * 5 3 2 16 16 C 1.38239 * 119.99958 * 66.20041 * 15 5 3 17 17 C 1.38225 * 119.99882 * 179.78738 * 16 15 5 18 18 C 1.38239 * 120.00315 * 0.44348 * 17 16 15 19 19 C 1.38237 * 119.99750 * 359.81237 * 18 17 16 20 20 C 1.38233 * 119.99947 * 359.97438 * 19 18 17 21 21 C 1.46502 * 119.99515 * 179.97438 * 2 1 3 22 22 C 1.53777 * 113.61833 * 39.14089 * 21 2 1 23 23 C 1.53948 * 87.02296 * 220.04672 * 22 21 2 24 24 O 1.42904 * 113.53599 * 270.81381 * 23 22 21 25 25 C 1.53775 * 113.61808 * 301.52972 * 21 2 1 26 26 H 1.09002 * 109.46659 * 90.00498 * 1 2 3 27 27 H 1.09001 * 109.47158 * 210.00117 * 1 2 3 28 28 H 1.08996 * 109.46963 * 330.00684 * 1 2 3 29 29 H 0.97001 * 120.00121 * 180.02562 * 10 9 7 30 30 H 1.08003 * 119.99580 * 359.97438 * 16 15 5 31 31 H 1.08003 * 120.00232 * 180.27140 * 17 16 15 32 32 H 1.07994 * 120.00268 * 179.83392 * 18 17 16 33 33 H 1.07997 * 120.00456 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00174 * 180.02562 * 20 19 18 35 35 H 1.09011 * 112.84476 * 170.33296 * 21 2 1 36 36 H 1.09002 * 113.61183 * 334.56449 * 22 21 2 37 37 H 1.08998 * 113.61549 * 105.46332 * 22 21 2 38 38 H 1.09000 * 113.66995 * 139.93111 * 23 22 21 39 39 H 0.96705 * 113.99747 * 277.49005 * 24 23 22 40 40 H 1.09000 * 113.61680 * 254.53372 * 25 21 2 41 41 H 1.09002 * 113.61662 * 25.43421 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 1 0.7585 2.5303 0.8891 7 6 0.5195 2.5518 -1.2314 8 1 0.7795 1.9837 -2.1123 9 6 -0.6078 3.3456 -1.2309 10 7 -1.2958 3.5114 -2.3394 11 14 -1.1582 4.1855 0.3444 12 1 -0.4277 5.4688 0.5022 13 1 -2.6177 4.4514 0.2796 14 1 -0.8665 3.3040 1.5032 15 6 2.3648 3.6177 -0.0011 16 6 3.1812 3.8286 -1.0966 17 6 4.0763 4.8819 -1.0988 18 6 4.1617 5.7188 -0.0019 19 6 3.3491 5.5047 1.0957 20 6 2.4508 4.4541 1.0962 21 6 2.1974 -1.2688 0.0006 22 6 1.5590 -2.3491 -0.8883 23 6 1.9072 -3.3557 0.2232 24 8 3.2050 -3.9368 0.0808 25 6 1.8673 -2.1702 1.2019 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 -2.0887 4.0702 -2.3392 30 1 3.1174 3.1722 -1.9519 31 1 4.7111 5.0493 -1.9564 32 1 4.8630 6.5401 -0.0026 33 1 3.4160 6.1583 1.9529 34 1 1.8156 4.2871 1.9535 35 1 3.2667 -1.1403 -0.1682 36 1 0.4874 -2.2155 -1.0363 37 1 2.0976 -2.5223 -1.8200 38 1 1.1280 -4.0965 0.4026 39 1 3.2365 -4.6830 -0.5336 40 1 2.6544 -2.1992 1.9554 41 1 0.8802 -1.9877 1.6266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648705965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:26 Heat of formation + Delta-G solvation = -52.373294 kcal Electronic energy + Delta-G solvation = -23574.990728 eV Core-core repulsion = 20226.875170 eV Total energy + Delta-G solvation = -3348.115559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48893 -40.23682 -39.11185 -36.55571 -35.65746 -34.21399 -33.22164 -31.65101 -29.53255 -27.86753 -26.73433 -26.09659 -24.66858 -23.37692 -22.44217 -20.61279 -20.02329 -19.12376 -18.36013 -17.88499 -17.56997 -17.08117 -16.42858 -16.14507 -15.95147 -15.70533 -15.33412 -14.89506 -14.58320 -14.32757 -14.14677 -13.88061 -13.79573 -13.64557 -13.45094 -13.32558 -12.98781 -12.92838 -12.71708 -12.65605 -12.14689 -12.04062 -11.98399 -11.63307 -11.41550 -11.28063 -10.85969 -10.80372 -10.45738 -9.66458 -9.45605 -9.38147 -8.32522 -6.37754 0.62040 0.68629 1.32205 1.39106 1.42545 1.79717 2.26459 2.31340 2.97073 3.12474 3.15287 3.54495 3.71325 3.90008 4.00174 4.09833 4.18009 4.21514 4.31499 4.35404 4.38824 4.56279 4.61708 4.73317 4.76699 4.80344 4.87519 4.89639 4.99308 5.01861 5.14545 5.18340 5.29833 5.30237 5.40851 5.66805 5.71137 5.81175 5.94641 6.20326 6.27985 6.52663 6.61244 6.92369 7.24722 7.37865 8.82039 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.006010 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.234114 B = 4658.037993 C = 5736.513314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.600 5.600 3 C 0.527 3.473 4 O -0.592 6.592 5 C 0.027 3.973 6 H 0.074 0.926 7 C -0.489 4.489 8 H 0.036 0.964 9 C 0.045 3.955 10 N -0.929 5.929 11 Si 0.910 3.090 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.235 1.235 15 C -0.058 4.058 16 C -0.102 4.102 17 C -0.134 4.134 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.153 4.153 21 C 0.108 3.892 22 C -0.174 4.174 23 C 0.099 3.901 24 O -0.572 6.572 25 C -0.141 4.141 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.269 0.731 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -8.559 7.740 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.330 5.330 3 C 0.317 3.683 4 O -0.473 6.473 5 C 0.006 3.994 6 H 0.091 0.909 7 C -0.527 4.527 8 H 0.055 0.945 9 C -0.156 4.156 10 N -0.567 5.567 11 Si 0.734 3.266 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.159 1.159 15 C -0.059 4.059 16 C -0.121 4.121 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.171 4.171 21 C 0.005 3.995 22 C -0.212 4.212 23 C 0.040 3.960 24 O -0.381 6.381 25 C -0.179 4.179 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.152 0.848 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.250 0.750 40 H 0.086 0.914 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.005 -8.035 8.068 11.776 hybrid contribution -0.588 0.187 -0.580 0.846 sum 2.417 -7.848 7.488 11.113 Atomic orbital electron populations 1.21743 0.77797 1.02914 1.02162 1.47773 1.07936 1.04880 1.72447 1.21112 0.87135 0.86683 0.73357 1.90549 1.15762 1.88344 1.52637 1.18443 0.93502 0.88032 0.99404 0.90852 1.20281 1.07385 1.28118 0.96900 0.94532 1.25517 0.95952 0.95513 0.98613 1.69987 1.18724 1.39491 1.28458 0.86251 0.77751 0.80662 0.81902 1.19365 1.20738 1.15905 1.20163 0.95083 0.96913 0.93789 1.20811 0.96140 0.97642 0.97475 1.21357 0.98831 0.95332 0.99707 1.21349 1.00451 1.00254 0.93353 1.21367 0.95872 0.97552 0.99534 1.21237 1.00837 0.97342 0.97711 1.22623 0.96598 0.81687 0.98596 1.24145 1.02588 0.95838 0.98666 1.22513 0.85620 0.93466 0.94449 1.86453 1.30047 1.52837 1.68741 1.23571 1.03654 0.93920 0.96779 0.93332 0.88649 0.91697 0.92138 0.89521 0.84830 0.83119 0.83331 0.86166 0.90004 0.87473 0.91208 0.87270 0.74956 0.91442 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.19 7.75 127.77 0.99 4.18 16 2 N -0.60 -22.96 3.08 -819.65 -2.53 -25.49 16 3 C 0.53 24.52 6.96 87.66 0.61 25.13 16 4 O -0.59 -30.60 14.90 -3.02 -0.05 -30.64 16 5 C 0.03 1.30 1.10 -13.03 -0.01 1.28 16 6 H 0.07 3.29 4.47 -2.39 -0.01 3.28 16 7 C -0.49 -25.89 6.05 25.60 0.15 -25.73 16 8 H 0.04 2.21 8.05 -2.91 -0.02 2.19 16 9 C 0.04 2.38 5.47 84.66 0.46 2.84 16 10 N -0.93 -53.63 13.96 21.45 0.30 -53.33 16 11 Si 0.91 40.39 26.60 68.60 1.82 42.21 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.24 -9.28 6.30 99.48 0.63 -8.66 16 15 C -0.06 -2.73 3.88 -19.86 -0.08 -2.81 16 16 C -0.10 -4.80 8.31 22.27 0.19 -4.61 16 17 C -0.13 -5.18 10.05 22.27 0.22 -4.96 16 18 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 19 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 20 C -0.15 -6.21 9.15 22.27 0.20 -6.01 16 21 C 0.11 3.56 4.14 45.51 0.19 3.74 16 22 C -0.17 -4.28 7.37 31.18 0.23 -4.05 16 23 C 0.10 1.95 5.28 31.18 0.16 2.12 16 24 O -0.57 -12.10 13.59 -148.98 -2.02 -14.13 16 25 C -0.14 -3.46 7.44 31.12 0.23 -3.23 16 26 H 0.05 1.78 7.88 -2.39 -0.02 1.76 16 27 H 0.10 2.24 6.33 -2.39 -0.02 2.23 16 28 H 0.06 2.33 6.14 -2.39 -0.01 2.32 16 29 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.09 4.44 7.89 -2.91 -0.02 4.41 16 31 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.12 4.41 7.96 -2.91 -0.02 4.39 16 35 H 0.08 3.26 7.21 -2.38 -0.02 3.24 16 36 H 0.11 2.40 6.81 -2.39 -0.02 2.39 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.40 4.42 9.12 -74.05 -0.68 3.74 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.12 2.38 6.82 -2.39 -0.02 2.36 16 Total: -1.00 -72.25 331.26 1.82 -70.43 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.29 Total: 31.41 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 4.00 Total: -20.48 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.23 Total: -78.82 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.07 Total: -44.77 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.82 Total: 42.21 kcal Total: -72.25 1.82 -70.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648705965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.062 kcal (2) G-P(sol) polarization free energy of solvation -72.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds