Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 117.00144 * 2 1 4 4 O 1.20820 * 119.99808 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99941 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.46153 * 300.00054 * 5 3 2 7 7 C 1.38241 * 120.00104 * 60.00275 * 6 5 3 8 8 C 1.38237 * 120.00118 * 180.02562 * 7 6 5 9 9 C 1.38236 * 119.99893 * 359.97438 * 8 7 6 10 10 C 1.38237 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.38235 * 119.99983 * 240.01855 * 6 5 3 12 12 C 1.53041 * 109.45920 * 59.97266 * 5 3 2 13 13 C 1.53189 * 109.31383 * 58.62932 * 12 5 3 14 14 N 1.46924 * 108.76531 * 54.65183 * 13 12 5 15 15 C 1.36943 * 120.63086 * 126.36842 * 14 13 12 16 16 H 1.07998 * 119.99873 * 207.70723 * 15 14 13 17 17 C 1.38807 * 120.00025 * 27.69552 * 15 14 13 18 18 N 1.31622 * 120.00075 * 17.35121 * 17 15 14 19 19 Si 1.86804 * 120.00046 * 197.35584 * 17 15 14 20 20 H 1.48503 * 109.46985 * 60.00257 * 19 17 15 21 21 H 1.48503 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47064 * 299.99851 * 19 17 15 23 23 C 1.46920 * 118.74096 * 306.38590 * 14 13 12 24 24 C 1.53036 * 109.45978 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.47618 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47264 * 300.00769 * 1 2 3 27 27 H 1.09007 * 109.47158 * 60.00145 * 1 2 3 28 28 H 1.08000 * 120.00008 * 359.97438 * 7 6 5 29 29 H 1.07995 * 120.00146 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.99744 * 179.70680 * 9 8 7 31 31 H 1.08005 * 119.99527 * 179.97438 * 10 9 8 32 32 H 1.07994 * 120.00245 * 0.02562 * 11 6 5 33 33 H 1.08998 * 109.49819 * 178.59264 * 12 5 3 34 34 H 1.09002 * 109.49756 * 298.69006 * 12 5 3 35 35 H 1.09000 * 109.59791 * 294.86773 * 13 12 5 36 36 H 1.09000 * 109.59011 * 174.43448 * 13 12 5 37 37 H 0.97000 * 120.00130 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.58964 * 293.81908 * 23 14 13 39 39 H 1.09007 * 109.58833 * 173.39487 * 23 14 13 40 40 H 1.09007 * 109.49866 * 61.31301 * 24 5 3 41 41 H 1.09001 * 109.49870 * 181.37011 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1044 0.5919 1.2314 7 6 3.8399 -0.7472 1.4503 8 6 4.3330 -1.3736 2.5796 9 6 5.0911 -0.6610 3.4899 10 6 5.3564 0.6778 3.2705 11 6 4.8621 1.3045 2.1418 12 6 4.1137 0.5801 -1.2484 13 6 3.5373 1.2548 -2.4971 14 7 3.8253 2.6941 -2.4323 15 6 4.4576 3.3265 -3.4694 16 1 5.0544 4.2068 -3.2817 17 6 4.3316 2.8360 -4.7618 18 7 3.3609 1.9970 -5.0555 19 14 5.5396 3.3666 -6.0841 20 1 6.9150 2.9745 -5.6842 21 1 5.1906 2.7058 -7.3674 22 1 5.4740 4.8406 -6.2519 23 6 3.4225 3.4419 -1.2335 24 6 4.0000 2.7425 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.2473 -1.3039 0.7394 29 1 4.1261 -2.4196 2.7508 30 1 5.4724 -1.1492 4.3746 31 1 5.9483 1.2346 3.9819 32 1 5.0682 2.3508 1.9712 33 1 5.2008 0.6585 -1.2613 34 1 3.8244 -0.4707 -1.2365 35 1 2.4591 1.0992 -2.5320 36 1 3.9989 0.8296 -3.3883 37 1 3.2726 1.6545 -5.9587 38 1 2.3349 3.4646 -1.1652 39 1 3.8085 4.4597 -1.2908 40 1 3.6297 3.2310 0.9025 41 1 5.0882 2.8003 -0.0230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049068822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -32.698047 kcal Electronic energy + Delta-G solvation = -24197.842356 eV Core-core repulsion = 20850.579980 eV Total energy + Delta-G solvation = -3347.262376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88750 -38.96283 -37.25474 -35.83270 -33.85995 -31.42779 -31.03173 -29.91617 -28.97284 -27.65271 -25.45169 -23.49122 -22.94847 -22.08958 -21.34235 -20.44938 -19.10738 -17.29725 -17.00064 -16.47968 -15.96566 -15.78480 -14.90051 -14.67665 -14.44807 -13.98827 -13.69673 -13.38571 -13.27340 -13.22542 -12.99573 -12.57061 -12.51129 -12.20963 -11.83375 -11.53349 -11.40610 -11.32483 -10.92775 -10.89617 -10.66612 -10.47434 -10.44125 -10.19064 -10.12839 -9.68054 -9.60022 -9.44454 -8.81148 -8.58517 -8.41855 -6.62803 -5.76028 -3.17170 1.39599 1.50635 2.67500 3.07930 3.40754 3.46167 3.47515 3.92426 4.52454 4.77188 4.85826 5.05283 5.12260 5.22010 5.31117 5.34827 5.41196 5.43361 5.47082 5.53804 5.63469 5.68252 5.73502 6.02780 6.06544 6.15297 6.26605 6.36339 6.43610 6.50091 6.53597 6.59118 6.61762 6.72476 6.74319 6.85293 7.08929 7.18611 7.34148 7.61735 7.81764 8.20343 8.47579 9.23664 9.87630 10.44697 11.32986 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.005473 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.381249 B = 5114.419133 C = 5728.061269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.482 3.518 4 O -0.496 6.496 5 C 0.002 3.998 6 C -0.074 4.074 7 C -0.102 4.102 8 C -0.124 4.124 9 C -0.126 4.126 10 C -0.124 4.124 11 C -0.111 4.111 12 C -0.126 4.126 13 C 0.169 3.831 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.905 5.905 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.129 3.871 24 C -0.114 4.114 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 -7.038 15.281 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.325 3.675 4 O -0.382 6.382 5 C 0.001 3.999 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.129 4.129 12 C -0.166 4.166 13 C 0.043 3.957 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.003 3.997 24 C -0.153 4.153 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.302 -6.788 15.093 16.552 hybrid contribution 0.352 0.226 -0.727 0.839 sum 0.050 -6.562 14.366 15.794 Atomic orbital electron populations 1.23180 0.77254 1.03097 1.02328 1.86494 1.22681 1.33926 1.84373 1.23533 0.91401 0.81100 0.71488 1.90582 1.66879 1.36012 1.44712 1.19485 0.86435 0.98777 0.95196 1.19759 0.98456 0.94153 0.95044 1.21208 0.99069 0.94187 0.97474 1.21104 0.98578 0.99756 0.94756 1.21124 0.99236 0.94658 0.99361 1.21104 1.00488 0.95002 0.97657 1.21244 0.97426 1.00459 0.93735 1.22384 1.01523 0.98452 0.94207 1.20815 0.96494 0.83954 0.94474 1.44058 1.68236 1.03349 1.15771 1.19167 1.22087 1.11076 0.85665 0.91614 1.25027 0.97428 1.00258 0.96984 1.70025 1.29944 1.35596 1.19351 0.86370 0.81181 0.78176 0.81059 1.21050 1.21676 1.20911 1.21279 0.98376 0.94379 0.85640 1.22072 1.01080 0.91595 1.00599 0.88574 0.92464 0.91834 0.85078 0.86229 0.86474 0.86229 0.85270 0.90845 0.91831 0.96736 0.88747 0.93612 0.93234 0.92753 0.92040 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 16 2 O -0.36 -5.90 8.61 -39.27 -0.34 -6.24 16 3 C 0.48 9.09 5.04 36.00 0.18 9.27 16 4 O -0.50 -10.46 13.34 -18.74 -0.25 -10.71 16 5 C 0.00 0.04 0.56 -156.78 -0.09 -0.05 16 6 C -0.07 -1.13 4.75 -104.62 -0.50 -1.63 16 7 C -0.10 -1.41 8.45 -39.58 -0.33 -1.74 16 8 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 9 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 10 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 11 C -0.11 -1.52 8.98 -39.58 -0.36 -1.88 16 12 C -0.13 -2.44 4.67 -26.61 -0.12 -2.56 16 13 C 0.17 4.08 4.96 -3.71 -0.02 4.07 16 14 N -0.59 -15.15 2.99 -172.33 -0.52 -15.66 16 15 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 19 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.13 2.89 6.12 -3.71 -0.02 2.87 16 24 C -0.11 -2.09 3.21 -26.61 -0.09 -2.18 16 25 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 27 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 28 H 0.13 1.80 6.38 -52.49 -0.33 1.46 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.13 1.68 5.89 -52.49 -0.31 1.37 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.11 7.34 -51.93 -0.38 0.73 16 35 H 0.01 0.38 7.37 -51.93 -0.38 0.00 16 36 H 0.09 2.53 6.04 -51.93 -0.31 2.21 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.05 1.21 5.54 -51.93 -0.29 0.92 16 39 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.06 1.03 7.41 -51.92 -0.38 0.64 16 41 H 0.07 1.32 7.60 -51.93 -0.39 0.92 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -31.66 323.39 -8.05 -39.71 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.71 Total: 2.08 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.70 Total: -4.95 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.10 Total: -41.55 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.59 Total: -16.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.66 -8.05 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049068822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.008 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds