Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 117.00144 * 2 1 4 4 O 1.20820 * 119.99808 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99941 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.46153 * 300.00054 * 5 3 2 7 7 C 1.38241 * 120.00104 * 60.00275 * 6 5 3 8 8 C 1.38237 * 120.00118 * 180.02562 * 7 6 5 9 9 C 1.38236 * 119.99893 * 359.97438 * 8 7 6 10 10 C 1.38237 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.38235 * 119.99983 * 240.01855 * 6 5 3 12 12 C 1.53041 * 109.45920 * 59.97266 * 5 3 2 13 13 C 1.53189 * 109.31383 * 58.62932 * 12 5 3 14 14 N 1.46924 * 108.76531 * 54.65183 * 13 12 5 15 15 C 1.36943 * 120.63086 * 126.36842 * 14 13 12 16 16 H 1.07998 * 119.99873 * 207.70723 * 15 14 13 17 17 C 1.38807 * 120.00025 * 27.69552 * 15 14 13 18 18 N 1.31622 * 120.00075 * 17.35121 * 17 15 14 19 19 Si 1.86804 * 120.00046 * 197.35584 * 17 15 14 20 20 H 1.48503 * 109.46985 * 60.00257 * 19 17 15 21 21 H 1.48503 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47064 * 299.99851 * 19 17 15 23 23 C 1.46920 * 118.74096 * 306.38590 * 14 13 12 24 24 C 1.53036 * 109.45978 * 180.02562 * 5 3 2 25 25 H 1.08995 * 109.47618 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47264 * 300.00769 * 1 2 3 27 27 H 1.09007 * 109.47158 * 60.00145 * 1 2 3 28 28 H 1.08000 * 120.00008 * 359.97438 * 7 6 5 29 29 H 1.07995 * 120.00146 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.99744 * 179.70680 * 9 8 7 31 31 H 1.08005 * 119.99527 * 179.97438 * 10 9 8 32 32 H 1.07994 * 120.00245 * 0.02562 * 11 6 5 33 33 H 1.08998 * 109.49819 * 178.59264 * 12 5 3 34 34 H 1.09002 * 109.49756 * 298.69006 * 12 5 3 35 35 H 1.09000 * 109.59791 * 294.86773 * 13 12 5 36 36 H 1.09000 * 109.59011 * 174.43448 * 13 12 5 37 37 H 0.97000 * 120.00130 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.58964 * 293.81908 * 23 14 13 39 39 H 1.09007 * 109.58833 * 173.39487 * 23 14 13 40 40 H 1.09007 * 109.49866 * 61.31301 * 24 5 3 41 41 H 1.09001 * 109.49870 * 181.37011 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1044 0.5919 1.2314 7 6 3.8399 -0.7472 1.4503 8 6 4.3330 -1.3736 2.5796 9 6 5.0911 -0.6610 3.4899 10 6 5.3564 0.6778 3.2705 11 6 4.8621 1.3045 2.1418 12 6 4.1137 0.5801 -1.2484 13 6 3.5373 1.2548 -2.4971 14 7 3.8253 2.6941 -2.4323 15 6 4.4576 3.3265 -3.4694 16 1 5.0544 4.2068 -3.2817 17 6 4.3316 2.8360 -4.7618 18 7 3.3609 1.9970 -5.0555 19 14 5.5396 3.3666 -6.0841 20 1 6.9150 2.9745 -5.6842 21 1 5.1906 2.7058 -7.3674 22 1 5.4740 4.8406 -6.2519 23 6 3.4225 3.4419 -1.2335 24 6 4.0000 2.7425 0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.2473 -1.3039 0.7394 29 1 4.1261 -2.4196 2.7508 30 1 5.4724 -1.1492 4.3746 31 1 5.9483 1.2346 3.9819 32 1 5.0682 2.3508 1.9712 33 1 5.2008 0.6585 -1.2613 34 1 3.8244 -0.4707 -1.2365 35 1 2.4591 1.0992 -2.5320 36 1 3.9989 0.8296 -3.3883 37 1 3.2726 1.6545 -5.9587 38 1 2.3349 3.4646 -1.1652 39 1 3.8085 4.4597 -1.2908 40 1 3.6297 3.2310 0.9025 41 1 5.0882 2.8003 -0.0230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049068822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -49.902981 kcal Electronic energy + Delta-G solvation = -24198.588418 eV Core-core repulsion = 20850.579980 eV Total energy + Delta-G solvation = -3348.008438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28897 -40.08868 -38.75026 -37.35512 -35.53405 -33.21903 -32.25801 -31.33733 -30.41699 -28.89589 -27.17033 -25.06129 -24.46967 -23.35778 -22.60493 -21.98938 -20.61460 -18.92267 -18.55034 -17.78376 -17.29692 -17.05852 -16.81215 -15.89115 -15.74951 -15.44668 -15.35537 -14.89745 -14.67490 -14.57885 -14.23529 -14.13406 -13.79328 -13.51199 -13.20258 -13.08830 -12.99336 -12.89359 -12.58768 -12.42382 -12.28612 -11.99896 -11.93243 -11.83860 -11.70982 -11.38073 -11.30271 -11.06734 -10.55729 -9.74650 -9.59875 -8.69839 -7.88658 -5.33847 0.40535 0.57210 1.22080 1.47022 1.49543 1.56559 1.81191 2.51138 2.95438 3.25831 3.47736 3.59040 3.67881 3.87202 4.01693 4.22177 4.24351 4.29045 4.30773 4.36796 4.41352 4.61144 4.63083 4.66895 4.72616 4.80300 4.85935 4.91566 4.97609 5.05770 5.12519 5.23091 5.24272 5.32937 5.49332 5.63227 5.64342 5.67562 5.68071 5.74763 6.16811 6.36894 6.76803 7.12333 7.82446 8.36021 9.18498 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.005473 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.381249 B = 5114.419133 C = 5728.061269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.478 3.522 4 O -0.527 6.527 5 C 0.007 3.993 6 C -0.094 4.094 7 C -0.114 4.114 8 C -0.123 4.123 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.123 4.123 12 C -0.111 4.111 13 C 0.179 3.821 14 N -0.607 5.607 15 C -0.265 4.265 16 H 0.069 0.931 17 C -0.051 4.051 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.126 3.874 24 C -0.102 4.102 25 H 0.137 0.863 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.127 0.873 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.080 0.920 35 H -0.017 1.017 36 H 0.064 0.936 37 H 0.250 0.750 38 H 0.027 0.973 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 -8.139 17.633 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.322 3.678 4 O -0.416 6.416 5 C 0.006 3.994 6 C -0.094 4.094 7 C -0.131 4.131 8 C -0.141 4.141 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.141 4.141 12 C -0.150 4.150 13 C 0.053 3.947 14 N -0.331 5.331 15 C -0.395 4.395 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.584 5.584 19 Si 0.798 3.202 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.001 3.999 24 C -0.141 4.141 25 H 0.155 0.845 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.145 0.855 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.001 0.999 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.218 -7.899 17.477 19.218 hybrid contribution -0.206 0.538 -1.382 1.497 sum 1.012 -7.361 16.095 17.727 Atomic orbital electron populations 1.23495 0.75451 1.05643 1.01863 1.86478 1.24457 1.32652 1.83736 1.23836 0.92020 0.81266 0.70639 1.90563 1.67655 1.37066 1.46357 1.19352 0.85883 0.98322 0.95876 1.19552 1.00379 0.94924 0.94592 1.21264 0.99657 0.93710 0.98517 1.21424 0.97835 1.01060 0.93801 1.21555 0.97857 0.94396 0.99913 1.21442 0.99991 0.95607 0.97160 1.21372 0.97620 1.00752 0.94366 1.22133 1.01214 0.98977 0.92660 1.20571 0.94491 0.83887 0.95757 1.44312 1.68342 1.04099 1.16312 1.19534 1.22073 1.11303 0.86568 0.91328 1.25826 0.98999 1.00675 0.99078 1.70197 1.31678 1.37026 1.19513 0.85296 0.79078 0.77856 0.77946 1.20073 1.21994 1.20223 1.21337 0.97312 0.94822 0.86421 1.21918 1.01361 0.91924 0.98857 0.84529 0.91645 0.93625 0.85549 0.83657 0.83249 0.83583 0.85079 0.90631 0.90171 0.99869 0.91793 0.94055 0.95482 0.92746 0.90319 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -11.73 8.61 -51.46 -0.44 -12.18 16 3 C 0.48 18.29 5.04 71.23 0.36 18.65 16 4 O -0.53 -22.95 13.34 21.98 0.29 -22.66 16 5 C 0.01 0.24 0.56 -53.65 -0.03 0.21 16 6 C -0.09 -2.74 4.75 -19.87 -0.09 -2.83 16 7 C -0.11 -2.92 8.45 22.27 0.19 -2.73 16 8 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 9 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 10 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 11 C -0.12 -3.10 8.98 22.27 0.20 -2.90 16 12 C -0.11 -4.32 4.67 30.67 0.14 -4.18 16 13 C 0.18 9.03 4.96 86.36 0.43 9.46 16 14 N -0.61 -32.13 2.99 -699.12 -2.09 -34.22 16 15 C -0.26 -15.04 9.58 84.03 0.81 -14.24 16 16 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 17 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 18 N -0.94 -56.97 11.19 21.65 0.24 -56.73 16 19 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 C 0.13 5.82 6.12 86.36 0.53 6.35 16 24 C -0.10 -3.72 3.21 30.67 0.10 -3.62 16 25 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 27 H 0.04 1.34 8.13 -2.38 -0.02 1.32 16 28 H 0.13 3.28 6.38 -2.91 -0.02 3.26 16 29 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.13 3.14 5.89 -2.91 -0.02 3.12 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.08 2.81 7.34 -2.39 -0.02 2.80 16 35 H -0.02 -0.93 7.37 -2.39 -0.02 -0.94 16 36 H 0.06 3.59 6.04 -2.39 -0.01 3.58 16 37 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.03 1.39 5.54 -2.39 -0.01 1.37 16 39 H 0.05 2.43 7.93 -2.38 -0.02 2.41 16 40 H 0.08 2.59 7.41 -2.38 -0.02 2.57 16 41 H 0.08 2.92 7.60 -2.39 -0.02 2.90 16 Total: -1.00 -70.90 323.39 5.97 -64.94 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.03 Total: 15.98 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.91 Total: -2.74 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -1.85 Total: -90.95 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.15 Total: -34.83 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.90 5.97 -64.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049068822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.035 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds