Wall clock time and date at job start Tue Mar 31 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99849 * 2 1 4 4 H 1.08994 * 109.49601 * 30.07051 * 3 2 1 5 5 C 1.53051 * 109.52150 * 150.14453 * 3 2 1 6 6 C 1.53350 * 109.60229 * 181.34415 * 5 3 2 7 7 C 1.53199 * 109.14982 * 298.70800 * 6 5 3 8 8 N 1.46932 * 108.88813 * 54.58296 * 7 6 5 9 9 C 1.34779 * 120.62699 * 126.34139 * 8 7 6 10 10 O 1.21549 * 120.00225 * 354.27423 * 9 8 7 11 11 C 1.47885 * 119.99677 * 174.28104 * 9 8 7 12 12 C 1.39919 * 120.02271 * 323.21061 * 11 9 8 13 13 C 1.38326 * 120.35574 * 180.02562 * 12 11 9 14 14 C 1.37753 * 120.41745 * 359.97438 * 13 12 11 15 15 C 1.40750 * 120.03299 * 0.02562 * 14 13 12 16 16 C 1.41446 * 120.17560 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00008 * 25.07003 * 16 15 14 18 18 C 1.39935 * 119.99933 * 205.07630 * 16 15 14 19 19 N 1.30835 * 119.99923 * 17.05898 * 18 16 15 20 20 Si 1.86801 * 120.00131 * 197.05593 * 18 16 15 21 21 H 1.48497 * 109.46939 * 89.99904 * 20 18 16 22 22 H 1.48502 * 109.46852 * 210.00248 * 20 18 16 23 23 H 1.48503 * 109.46947 * 329.99850 * 20 18 16 24 24 C 1.38994 * 120.02552 * 142.94690 * 11 9 8 25 25 C 1.46923 * 118.73987 * 306.31938 * 8 7 6 26 26 H 1.08999 * 109.47501 * 59.99555 * 1 2 3 27 27 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47062 * 300.00003 * 1 2 3 29 29 H 1.08999 * 109.45853 * 301.35497 * 5 3 2 30 30 H 1.08996 * 109.45828 * 61.31603 * 5 3 2 31 31 H 1.09004 * 109.68174 * 178.75339 * 6 5 3 32 32 H 1.08991 * 109.47994 * 58.55210 * 6 5 3 33 33 H 1.08997 * 109.58696 * 294.72603 * 7 6 5 34 34 H 1.08997 * 109.58549 * 174.43989 * 7 6 5 35 35 H 1.08001 * 119.82319 * 0.02562 * 12 11 9 36 36 H 1.08008 * 119.79207 * 180.02562 * 13 12 11 37 37 H 1.07992 * 119.98266 * 180.02562 * 14 13 12 38 38 H 0.96999 * 119.99892 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.20030 * 359.97438 * 24 11 9 40 40 H 1.08995 * 109.58393 * 173.39566 * 25 8 7 41 41 H 1.08997 * 109.58657 * 293.82212 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3458 1.9995 0.5148 5 6 3.3611 1.2639 0.7181 6 6 3.9711 2.6706 0.7486 7 6 4.1987 3.1509 -0.6882 8 7 2.9325 3.0564 -1.4275 9 6 2.4360 4.1270 -2.0786 10 8 2.9801 5.2088 -1.9729 11 6 1.2292 3.9855 -2.9216 12 6 1.0316 2.8207 -3.6713 13 6 -0.0945 2.6813 -4.4625 14 6 -1.0344 3.6866 -4.5213 15 6 -0.8526 4.8655 -3.7742 16 6 -1.8161 5.8995 -3.8319 17 1 -2.8395 5.6702 -4.0895 18 6 -1.4431 7.2196 -3.5555 19 7 -0.1798 7.5598 -3.5731 20 14 -2.7487 8.4961 -3.1615 21 1 -2.9912 8.5202 -1.6967 22 1 -2.2838 9.8338 -3.6085 23 1 -4.0089 8.1491 -3.8663 24 6 0.2878 5.0071 -2.9655 25 6 2.2181 1.7726 -1.4440 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.2191 0.9083 1.7386 30 1 4.0331 0.5886 0.1886 31 1 4.9230 2.6465 1.2792 32 1 3.2883 3.3519 1.2561 33 1 4.9499 2.5239 -1.1684 34 1 4.5393 4.1862 -0.6777 35 1 1.7621 2.0262 -3.6320 36 1 -0.2381 1.7781 -5.0371 37 1 -1.9111 3.5702 -5.1410 38 1 0.0787 8.4749 -3.3818 39 1 0.4340 5.9059 -2.3849 40 1 1.2508 1.8990 -1.9300 41 1 2.8079 1.0333 -1.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076244858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:02 Heat of formation + Delta-G solvation = -60.778747 kcal Electronic energy + Delta-G solvation = -23446.874898 eV Core-core repulsion = 20098.394852 eV Total energy + Delta-G solvation = -3348.480046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04555 -38.23800 -37.13467 -35.95219 -33.86339 -32.58189 -30.58501 -29.67538 -29.47739 -26.53388 -25.46872 -25.36535 -22.97170 -22.03264 -21.00180 -20.44093 -18.80039 -17.63123 -16.44604 -16.15651 -15.91197 -15.23284 -15.14894 -15.11353 -14.74402 -14.33145 -14.04760 -13.57366 -13.29259 -13.03389 -12.88424 -12.64791 -12.46260 -12.31020 -11.89280 -11.70621 -11.33603 -11.23757 -11.16030 -10.94710 -10.84348 -10.72662 -10.60010 -10.42735 -10.10456 -9.80282 -9.66557 -9.26741 -8.92470 -8.27882 -7.63308 -7.52899 -6.81657 -4.45051 2.26451 2.76662 3.05038 3.08294 3.11407 3.25839 3.68467 3.82599 3.88845 4.53874 4.79058 4.84317 4.97618 5.08616 5.22550 5.35720 5.40778 5.46359 5.50186 5.56755 5.70361 5.72997 5.78429 5.88648 5.91716 6.04976 6.09035 6.14184 6.21749 6.30372 6.65464 6.83343 6.95277 7.01213 7.17436 7.19865 7.34838 7.63235 7.74896 7.84330 7.95969 8.12891 8.46306 8.76675 8.79125 8.84634 10.12523 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.004886 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.312659 B = 5729.796671 C = 6264.754053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.074 3.926 4 H 0.065 0.935 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.108 3.892 8 N -0.613 5.613 9 C 0.568 3.432 10 O -0.540 6.540 11 C -0.122 4.122 12 C -0.225 4.225 13 C -0.096 4.096 14 C -0.213 4.213 15 C 0.102 3.898 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.100 4.100 25 C 0.077 3.923 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.285 0.715 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -10.330 7.523 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.302 6.302 3 C 0.015 3.985 4 H 0.083 0.917 5 C -0.152 4.152 6 C -0.169 4.169 7 C -0.014 4.014 8 N -0.349 5.349 9 C 0.360 3.640 10 O -0.417 6.417 11 C -0.125 4.125 12 C -0.244 4.244 13 C -0.115 4.115 14 C -0.233 4.233 15 C 0.100 3.900 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.406 5.406 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.120 4.120 25 C -0.046 4.046 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.002 -9.689 7.596 12.946 hybrid contribution -0.671 0.740 0.086 1.003 sum 3.332 -8.949 7.682 12.256 Atomic orbital electron populations 1.22839 0.80779 1.02578 1.00674 1.87852 1.19943 1.27306 1.95078 1.22524 0.95135 0.84636 0.96213 0.91725 1.21634 0.95491 0.97346 1.00764 1.21951 1.01490 0.96204 0.97236 1.21536 0.85876 1.03115 0.90916 1.47914 1.23265 1.11130 1.52597 1.19003 0.84140 0.82509 0.78383 1.90706 1.61138 1.26099 1.63752 1.19425 0.95115 0.96971 1.01030 1.20507 1.00320 0.97430 1.06183 1.20457 0.94871 0.97663 0.98467 1.21098 1.00812 0.96929 1.04411 1.17577 0.91945 0.91847 0.88668 1.19600 0.96731 0.91096 1.41538 0.90061 1.25980 0.96079 1.00006 0.92615 1.69812 1.17209 1.20498 1.33055 0.86277 0.81321 0.79201 0.79772 1.19213 1.20179 1.18537 1.21505 0.94327 0.96693 0.99455 1.22643 1.00289 0.84958 0.96721 0.93175 0.89723 0.94113 0.91328 0.91040 0.90303 0.91355 0.91895 0.88910 0.88401 0.88831 0.88608 0.90397 0.85466 0.86564 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.08 10.35 -35.23 -0.36 -5.44 16 3 C 0.07 0.99 2.76 -26.61 -0.07 0.91 16 4 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 5 C -0.11 -1.30 5.54 -26.52 -0.15 -1.45 16 6 C -0.13 -1.49 6.11 -26.45 -0.16 -1.66 16 7 C 0.11 1.54 6.43 -3.70 -0.02 1.52 16 8 N -0.61 -10.66 2.97 -173.87 -0.52 -11.18 16 9 C 0.57 12.62 7.36 -12.31 -0.09 12.53 16 10 O -0.54 -13.69 16.28 5.32 0.09 -13.60 16 11 C -0.12 -2.88 5.24 -105.04 -0.55 -3.43 16 12 C -0.22 -4.73 7.36 -38.92 -0.29 -5.01 16 13 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 14 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 15 C 0.10 2.66 5.56 -106.87 -0.59 2.06 16 16 C -0.46 -11.93 9.05 -37.73 -0.34 -12.27 16 17 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 18 C 0.07 1.82 5.15 -17.34 -0.09 1.73 16 19 N -0.78 -20.72 10.97 55.55 0.61 -20.11 16 20 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.10 -2.62 8.25 -38.44 -0.32 -2.94 16 25 C 0.08 1.18 4.41 -3.72 -0.02 1.16 16 26 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 35 H 0.10 1.82 6.18 -52.49 -0.32 1.50 16 36 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.13 3.61 6.16 -52.49 -0.32 3.29 16 40 H 0.12 1.97 4.41 -51.93 -0.23 1.74 16 41 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -29.49 332.19 -8.42 -37.91 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.83 Total: 7.10 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.38 Total: -13.20 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.09 Total: -31.29 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.28 Total: -19.05 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.49 -8.42 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076244858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.871 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds