Wall clock time and date at job start Tue Mar 31 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99849 * 2 1 4 4 H 1.08994 * 109.49601 * 30.07051 * 3 2 1 5 5 C 1.53051 * 109.52150 * 150.14453 * 3 2 1 6 6 C 1.53350 * 109.60229 * 181.34415 * 5 3 2 7 7 C 1.53199 * 109.14982 * 298.70800 * 6 5 3 8 8 N 1.46932 * 108.88813 * 54.58296 * 7 6 5 9 9 C 1.34779 * 120.62699 * 126.34139 * 8 7 6 10 10 O 1.21549 * 120.00225 * 354.27423 * 9 8 7 11 11 C 1.47885 * 119.99677 * 174.28104 * 9 8 7 12 12 C 1.39919 * 120.02271 * 323.21061 * 11 9 8 13 13 C 1.38326 * 120.35574 * 180.02562 * 12 11 9 14 14 C 1.37753 * 120.41745 * 359.97438 * 13 12 11 15 15 C 1.40750 * 120.03299 * 0.02562 * 14 13 12 16 16 C 1.41446 * 120.17560 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00008 * 25.07003 * 16 15 14 18 18 C 1.39935 * 119.99933 * 205.07630 * 16 15 14 19 19 N 1.30835 * 119.99923 * 17.05898 * 18 16 15 20 20 Si 1.86801 * 120.00131 * 197.05593 * 18 16 15 21 21 H 1.48497 * 109.46939 * 89.99904 * 20 18 16 22 22 H 1.48502 * 109.46852 * 210.00248 * 20 18 16 23 23 H 1.48503 * 109.46947 * 329.99850 * 20 18 16 24 24 C 1.38994 * 120.02552 * 142.94690 * 11 9 8 25 25 C 1.46923 * 118.73987 * 306.31938 * 8 7 6 26 26 H 1.08999 * 109.47501 * 59.99555 * 1 2 3 27 27 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47062 * 300.00003 * 1 2 3 29 29 H 1.08999 * 109.45853 * 301.35497 * 5 3 2 30 30 H 1.08996 * 109.45828 * 61.31603 * 5 3 2 31 31 H 1.09004 * 109.68174 * 178.75339 * 6 5 3 32 32 H 1.08991 * 109.47994 * 58.55210 * 6 5 3 33 33 H 1.08997 * 109.58696 * 294.72603 * 7 6 5 34 34 H 1.08997 * 109.58549 * 174.43989 * 7 6 5 35 35 H 1.08001 * 119.82319 * 0.02562 * 12 11 9 36 36 H 1.08008 * 119.79207 * 180.02562 * 13 12 11 37 37 H 1.07992 * 119.98266 * 180.02562 * 14 13 12 38 38 H 0.96999 * 119.99892 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.20030 * 359.97438 * 24 11 9 40 40 H 1.08995 * 109.58393 * 173.39566 * 25 8 7 41 41 H 1.08997 * 109.58657 * 293.82212 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3458 1.9995 0.5148 5 6 3.3611 1.2639 0.7181 6 6 3.9711 2.6706 0.7486 7 6 4.1987 3.1509 -0.6882 8 7 2.9325 3.0564 -1.4275 9 6 2.4360 4.1270 -2.0786 10 8 2.9801 5.2088 -1.9729 11 6 1.2292 3.9855 -2.9216 12 6 1.0316 2.8207 -3.6713 13 6 -0.0945 2.6813 -4.4625 14 6 -1.0344 3.6866 -4.5213 15 6 -0.8526 4.8655 -3.7742 16 6 -1.8161 5.8995 -3.8319 17 1 -2.8395 5.6702 -4.0895 18 6 -1.4431 7.2196 -3.5555 19 7 -0.1798 7.5598 -3.5731 20 14 -2.7487 8.4961 -3.1615 21 1 -2.9912 8.5202 -1.6967 22 1 -2.2838 9.8338 -3.6085 23 1 -4.0089 8.1491 -3.8663 24 6 0.2878 5.0071 -2.9655 25 6 2.2181 1.7726 -1.4440 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.2191 0.9083 1.7386 30 1 4.0331 0.5886 0.1886 31 1 4.9230 2.6465 1.2792 32 1 3.2883 3.3519 1.2561 33 1 4.9499 2.5239 -1.1684 34 1 4.5393 4.1862 -0.6777 35 1 1.7621 2.0262 -3.6320 36 1 -0.2381 1.7781 -5.0371 37 1 -1.9111 3.5702 -5.1410 38 1 0.0787 8.4749 -3.3818 39 1 0.4340 5.9059 -2.3849 40 1 1.2508 1.8990 -1.9300 41 1 2.8079 1.0333 -1.9859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076244858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:02 Heat of formation + Delta-G solvation = -78.178902 kcal Electronic energy + Delta-G solvation = -23447.629426 eV Core-core repulsion = 20098.394852 eV Total energy + Delta-G solvation = -3349.234574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.52264 -39.56181 -38.84541 -37.26814 -35.68525 -33.93843 -32.04633 -31.34680 -31.05639 -27.55556 -27.24327 -26.74488 -24.26122 -23.46255 -22.78871 -21.73974 -20.31613 -19.33352 -17.86353 -17.63370 -17.25622 -16.78995 -16.69802 -16.39012 -16.05227 -15.85063 -15.36053 -14.99985 -14.83175 -14.50388 -14.25645 -14.05953 -13.84966 -13.75740 -13.51865 -13.01848 -12.87041 -12.75025 -12.56616 -12.30321 -12.17228 -11.99889 -11.97364 -11.86552 -11.60655 -11.52216 -11.10865 -10.96746 -10.54291 -9.72968 -9.40934 -9.39159 -8.67219 -6.40602 0.43927 0.96637 1.35406 1.45907 1.50136 1.81067 2.01284 2.17579 2.70364 2.78479 3.62123 3.68140 3.73479 3.86557 3.96460 4.11674 4.16924 4.40445 4.45859 4.49358 4.52411 4.57450 4.66038 4.74933 4.82075 4.87074 4.87503 4.93545 4.93909 5.05998 5.11931 5.16815 5.26198 5.29120 5.47293 5.55913 5.81666 5.92831 6.00712 6.15370 6.24329 6.32940 6.57744 6.85807 6.91691 7.16026 8.29026 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.004886 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.312659 B = 5729.796671 C = 6264.754053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.387 6.387 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.100 3.900 8 N -0.601 5.601 9 C 0.561 3.439 10 O -0.586 6.586 11 C -0.132 4.132 12 C -0.203 4.203 13 C -0.092 4.092 14 C -0.217 4.217 15 C 0.072 3.928 16 C -0.496 4.496 17 H 0.086 0.914 18 C 0.029 3.971 19 N -0.827 5.827 20 Si 0.984 3.016 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.249 1.249 24 C -0.133 4.133 25 C 0.074 3.926 26 H 0.038 0.962 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.286 0.714 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -13.150 8.018 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.305 6.305 3 C 0.018 3.982 4 H 0.069 0.931 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.021 4.021 8 N -0.335 5.335 9 C 0.352 3.648 10 O -0.467 6.467 11 C -0.135 4.135 12 C -0.223 4.223 13 C -0.110 4.110 14 C -0.236 4.236 15 C 0.070 3.930 16 C -0.525 4.525 17 H 0.104 0.896 18 C -0.186 4.186 19 N -0.453 5.453 20 Si 0.804 3.196 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.173 1.173 24 C -0.154 4.154 25 C -0.048 4.048 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.327 -12.581 8.106 15.579 hybrid contribution -0.687 1.379 -0.072 1.542 sum 3.639 -11.202 8.033 14.257 Atomic orbital electron populations 1.22993 0.79895 1.04077 1.00395 1.87850 1.20921 1.26758 1.94981 1.22458 0.96316 0.84647 0.94797 0.93134 1.21626 0.94162 0.97202 1.01620 1.21920 1.02943 0.95952 0.95142 1.21850 0.84759 1.02794 0.92730 1.47931 1.23943 1.10542 1.51059 1.18924 0.83862 0.83113 0.78921 1.90674 1.62425 1.28025 1.65548 1.19699 0.95071 0.97166 1.01557 1.20886 1.00651 0.96787 1.03966 1.20901 0.93698 0.98440 0.97962 1.21387 1.01861 0.96519 1.03859 1.17922 0.92305 0.93297 0.89513 1.19886 0.97058 0.92048 1.43508 0.89613 1.26887 0.98055 1.01937 0.91708 1.69924 1.19459 1.20989 1.34897 0.85178 0.78595 0.76323 0.79503 1.18917 1.19602 1.17267 1.21296 0.96254 0.96877 1.00957 1.22757 0.99434 0.84053 0.98570 0.94292 0.87365 0.93630 0.89674 0.89617 0.86922 0.92901 0.89086 0.91022 0.85179 0.84434 0.87198 0.90316 0.88911 0.88409 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.68 16 2 O -0.39 -9.12 10.35 -148.98 -1.54 -10.66 16 3 C 0.08 1.88 2.76 30.67 0.08 1.96 16 4 H 0.05 1.38 7.79 -2.39 -0.02 1.36 16 5 C -0.11 -2.08 5.54 30.73 0.17 -1.91 16 6 C -0.12 -2.47 6.11 30.78 0.19 -2.28 16 7 C 0.10 2.69 6.43 86.36 0.56 3.25 16 8 N -0.60 -20.39 2.97 -822.27 -2.44 -22.84 16 9 C 0.56 25.58 7.36 86.80 0.64 26.22 16 10 O -0.59 -31.29 16.28 -3.87 -0.06 -31.36 16 11 C -0.13 -6.35 5.24 -20.13 -0.11 -6.45 16 12 C -0.20 -8.25 7.36 22.70 0.17 -8.08 16 13 C -0.09 -3.66 10.01 22.18 0.22 -3.44 16 14 C -0.22 -10.04 9.78 22.77 0.22 -9.82 16 15 C 0.07 3.89 5.56 -21.32 -0.12 3.77 16 16 C -0.50 -26.78 9.05 23.47 0.21 -26.57 16 17 H 0.09 4.35 7.90 -2.91 -0.02 4.33 16 18 C 0.03 1.51 5.15 85.25 0.44 1.95 16 19 N -0.83 -46.66 10.97 21.82 0.24 -46.42 16 20 Si 0.98 39.36 29.59 68.60 2.03 41.39 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 24 C -0.13 -7.40 8.25 23.01 0.19 -7.21 16 25 C 0.07 2.10 4.41 86.36 0.38 2.48 16 26 H 0.04 0.87 8.02 -2.39 -0.02 0.85 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.26 7.00 -2.39 -0.02 2.25 16 35 H 0.13 4.41 6.18 -2.91 -0.02 4.39 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 39 H 0.09 5.73 6.16 -2.91 -0.02 5.71 16 40 H 0.10 3.14 4.41 -2.39 -0.01 3.13 16 41 H 0.09 2.22 8.06 -2.39 -0.02 2.20 16 Total: -1.00 -68.75 332.19 3.72 -65.03 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 1.03 Total: 29.30 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.47 Total: -24.45 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -2.21 Total: -69.25 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.61 Total: -42.02 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -68.75 3.72 -65.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076244858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.149 kcal (2) G-P(sol) polarization free energy of solvation -68.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds